data_9B4S # _model_server_result.job_id dLTM_ReM77_4F-eei1L0Bg _model_server_result.datetime_utc '2025-01-22 13:06:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9b4s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1101}' # _entry.id 9B4S # _exptl.entry_id 9B4S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 382.416 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2S)-2-({2-[1-(propan-2-yl)-1H-1,2,4-triazol-5-yl]-5,6-dihydroimidazo[1,2-d][1,4]benzoxazepin-9-yl}oxy)propanamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9B4S _cell.length_a 181.488 _cell.length_b 181.488 _cell.length_c 96.03 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9B4S _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B OG SER 29 B SER 28 1_555 E MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc2 B OG1 THR 47 B THR 46 1_555 E MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? metalc ? metalc3 D O2G GNP . B GNP 201 1_555 E MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc4 D O2B GNP . B GNP 201 1_555 E MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.943 ? # _chem_comp.formula 'C19 H22 N6 O3' _chem_comp.formula_weight 382.416 _chem_comp.id 5H5 _chem_comp.mon_nstd_flag . _chem_comp.name (2S)-2-({2-[1-(propan-2-yl)-1H-1,2,4-triazol-5-yl]-5,6-dihydroimidazo[1,2-d][1,4]benzoxazepin-9-yl}oxy)propanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GDC-0326 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C24 N23 5H5 sing 1 n y C24 N25 5H5 doub 2 n y N23 C22 5H5 doub 3 n y N25 N26 5H5 sing 4 n y C22 N26 5H5 sing 5 n y C22 C16 5H5 sing 6 n n N26 C27 5H5 sing 7 n n C29 C27 5H5 sing 8 n n C15 C16 5H5 doub 9 n y C15 N14 5H5 sing 10 n y C16 N17 5H5 sing 11 n y C27 C28 5H5 sing 12 n n N14 C13 5H5 sing 13 n n N14 C18 5H5 sing 14 n y N17 C18 5H5 doub 15 n y C13 C12 5H5 sing 16 n n C12 O11 5H5 sing 17 n n C18 C19 5H5 sing 18 n n C19 C20 5H5 doub 19 n y C19 C10 5H5 sing 20 n y O11 C10 5H5 sing 21 n n C20 C21 5H5 sing 22 n y C10 C9 5H5 doub 23 n y N1 C2 5H5 sing 24 n n C21 C8 5H5 doub 25 n y C9 C8 5H5 sing 26 n y C8 O7 5H5 sing 27 n n C2 O3 5H5 doub 28 n n C2 C4 5H5 sing 29 n n O7 C4 5H5 sing 30 n n C4 C6 5H5 sing 31 n n C4 H1 5H5 sing 32 n n C6 H2 5H5 sing 33 n n C6 H3 5H5 sing 34 n n C6 H4 5H5 sing 35 n n C12 H5 5H5 sing 36 n n C12 H6 5H5 sing 37 n n C15 H7 5H5 sing 38 n n C21 H8 5H5 sing 39 n n C24 H9 5H5 sing 40 n n C27 H10 5H5 sing 41 n n N1 H11 5H5 sing 42 n n N1 H12 5H5 sing 43 n n C9 H13 5H5 sing 44 n n C13 H14 5H5 sing 45 n n C13 H15 5H5 sing 46 n n C20 H16 5H5 sing 47 n n C28 H17 5H5 sing 48 n n C28 H18 5H5 sing 49 n n C28 H19 5H5 sing 50 n n C29 H20 5H5 sing 51 n n C29 H21 5H5 sing 52 n n C29 H22 5H5 sing 53 n n # _atom_sites.entry_id 9B4S _atom_sites.fract_transf_matrix[1][1] 0.00551 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00551 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010413 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 5H5 A 1 1101 1071 5H5 GDC . D 4 GNP B 1 201 500 GNP GNP . E 5 MG B 1 202 1 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 5H5 . . . C 3 -42.353 7.731 -4.635 1 144.56 ? C2 5H5 1101 A 1 HETATM 2 C C4 5H5 . . . C 3 -41.39 6.632 -4.978 1 135.39 ? C4 5H5 1101 A 1 HETATM 3 C C6 5H5 . . . C 3 -39.96 7.123 -4.783 1 136.46 ? C6 5H5 1101 A 1 HETATM 4 C C8 5H5 . . . C 3 -42.419 5.192 -6.66 1 142.49 ? C8 5H5 1101 A 1 HETATM 5 C C12 5H5 . . . C 3 -43.371 1.78 -9.963 1 141.49 ? C12 5H5 1101 A 1 HETATM 6 C C15 5H5 . . . C 3 -46.375 0.342 -8.521 1 138.36 ? C15 5H5 1101 A 1 HETATM 7 C C16 5H5 . . . C 3 -46.653 0.407 -7.18 1 147.64 ? C16 5H5 1101 A 1 HETATM 8 C C18 5H5 . . . C 3 -45.172 1.919 -7.544 1 132.01 ? C18 5H5 1101 A 1 HETATM 9 C C19 5H5 . . . C 3 -44.206 3.045 -7.284 1 125.89 ? C19 5H5 1101 A 1 HETATM 10 C C21 5H5 . . . C 3 -43.307 4.69 -5.701 1 154.4 ? C21 5H5 1101 A 1 HETATM 11 C C24 5H5 . . . C 3 -49.086 -2.077 -6.26 1 161.48 ? C24 5H5 1101 A 1 HETATM 12 C C27 5H5 . . . C 3 -47.705 0.436 -4.045 1 134.02 ? C27 5H5 1101 A 1 HETATM 13 N N1 5H5 . . . C 3 -42.956 7.741 -3.347 1 141.32 ? N1 5H5 1101 A 1 HETATM 14 O O3 5H5 . . . C 3 -42.606 8.597 -5.462 1 152.66 ? O3 5H5 1101 A 1 HETATM 15 O O7 5H5 . . . C 3 -41.573 6.222 -6.336 1 143.15 ? O7 5H5 1101 A 1 HETATM 16 C C9 5H5 . . . C 3 -42.39 4.648 -7.95 1 134.58 ? C9 5H5 1101 A 1 HETATM 17 C C10 5H5 . . . C 3 -43.246 3.595 -8.309 1 136.46 ? C10 5H5 1101 A 1 HETATM 18 O O11 5H5 . . . C 3 -43.137 3.132 -9.597 1 141.75 ? O11 5H5 1101 A 1 HETATM 19 C C13 5H5 . . . C 3 -44.873 1.561 -10.044 1 135.9 ? C13 5H5 1101 A 1 HETATM 20 N N14 5H5 . . . C 3 -45.448 1.292 -8.725 1 126.95 ? N14 5H5 1101 A 1 HETATM 21 N N17 5H5 . . . C 3 -45.936 1.354 -6.57 1 148.7 ? N17 5H5 1101 A 1 HETATM 22 C C20 5H5 . . . C 3 -44.183 3.64 -6.005 1 142.29 ? C20 5H5 1101 A 1 HETATM 23 C C22 5H5 . . . C 3 -47.646 -0.488 -6.504 1 148.62 ? C22 5H5 1101 A 1 HETATM 24 N N23 5H5 . . . C 3 -48.265 -1.482 -7.168 1 150.18 ? N23 5H5 1101 A 1 HETATM 25 N N25 5H5 . . . C 3 -48.965 -1.45 -5.057 1 149.15 ? N25 5H5 1101 A 1 HETATM 26 N N26 5H5 . . . C 3 -48.029 -0.419 -5.231 1 141.69 ? N26 5H5 1101 A 1 HETATM 27 C C28 5H5 . . . C 3 -46.77 -0.339 -3.123 1 157.05 ? C28 5H5 1101 A 1 HETATM 28 C C29 5H5 . . . C 3 -48.946 0.909 -3.288 1 145.45 ? C29 5H5 1101 A 1 # _model_server_stats.io_time_ms 78 _model_server_stats.parse_time_ms 49 _model_server_stats.create_model_time_ms 32 _model_server_stats.query_time_ms 1098 _model_server_stats.encode_time_ms 45 _model_server_stats.element_count 28 #