data_9B4T # _model_server_result.job_id KJZmeWAFUq_AW9ukG5v5ag _model_server_result.datetime_utc '2025-01-22 13:13:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9b4t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1101}' # _entry.id 9B4T # _exptl.entry_id 9B4T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 382.416 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2S)-2-({2-[1-(propan-2-yl)-1H-1,2,4-triazol-5-yl]-5,6-dihydroimidazo[1,2-d][1,4]benzoxazepin-9-yl}oxy)propanamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.5 _cell.angle_gamma 90 _cell.entry_id 9B4T _cell.length_a 58.935 _cell.length_b 105.936 _cell.length_c 114.493 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9B4T _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B OG SER 28 B SER 27 1_555 E MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? metalc ? metalc2 B OG1 THR 46 B THR 45 1_555 E MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.499 ? metalc ? metalc3 D O2G GNP . B GNP 201 1_555 E MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc4 D O2B GNP . B GNP 201 1_555 E MG MG . B MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.438 ? # _chem_comp.formula 'C19 H22 N6 O3' _chem_comp.formula_weight 382.416 _chem_comp.id 5H5 _chem_comp.mon_nstd_flag . _chem_comp.name (2S)-2-({2-[1-(propan-2-yl)-1H-1,2,4-triazol-5-yl]-5,6-dihydroimidazo[1,2-d][1,4]benzoxazepin-9-yl}oxy)propanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GDC-0326 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C24 N23 5H5 sing 1 n y C24 N25 5H5 doub 2 n y N23 C22 5H5 doub 3 n y N25 N26 5H5 sing 4 n y C22 N26 5H5 sing 5 n y C22 C16 5H5 sing 6 n n N26 C27 5H5 sing 7 n n C29 C27 5H5 sing 8 n n C15 C16 5H5 doub 9 n y C15 N14 5H5 sing 10 n y C16 N17 5H5 sing 11 n y C27 C28 5H5 sing 12 n n N14 C13 5H5 sing 13 n n N14 C18 5H5 sing 14 n y N17 C18 5H5 doub 15 n y C13 C12 5H5 sing 16 n n C12 O11 5H5 sing 17 n n C18 C19 5H5 sing 18 n n C19 C20 5H5 doub 19 n y C19 C10 5H5 sing 20 n y O11 C10 5H5 sing 21 n n C20 C21 5H5 sing 22 n y C10 C9 5H5 doub 23 n y N1 C2 5H5 sing 24 n n C21 C8 5H5 doub 25 n y C9 C8 5H5 sing 26 n y C8 O7 5H5 sing 27 n n C2 O3 5H5 doub 28 n n C2 C4 5H5 sing 29 n n O7 C4 5H5 sing 30 n n C4 C6 5H5 sing 31 n n C4 H1 5H5 sing 32 n n C6 H2 5H5 sing 33 n n C6 H3 5H5 sing 34 n n C6 H4 5H5 sing 35 n n C12 H5 5H5 sing 36 n n C12 H6 5H5 sing 37 n n C15 H7 5H5 sing 38 n n C21 H8 5H5 sing 39 n n C24 H9 5H5 sing 40 n n C27 H10 5H5 sing 41 n n N1 H11 5H5 sing 42 n n N1 H12 5H5 sing 43 n n C9 H13 5H5 sing 44 n n C13 H14 5H5 sing 45 n n C13 H15 5H5 sing 46 n n C20 H16 5H5 sing 47 n n C28 H17 5H5 sing 48 n n C28 H18 5H5 sing 49 n n C28 H19 5H5 sing 50 n n C29 H20 5H5 sing 51 n n C29 H21 5H5 sing 52 n n C29 H22 5H5 sing 53 n n # _atom_sites.entry_id 9B4T _atom_sites.fract_transf_matrix[1][1] 0.016968 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002233 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00944 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008809 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 5H5 A 1 1101 1071 5H5 GDC . D 4 GNP B 1 201 500 GNP GNP . E 5 MG B 1 202 1 MG MG . F 6 HOH A 1 1201 23 HOH HOH . F 6 HOH A 2 1202 14 HOH HOH . F 6 HOH A 3 1203 4 HOH HOH . F 6 HOH A 4 1204 22 HOH HOH . F 6 HOH A 5 1205 17 HOH HOH . F 6 HOH A 6 1206 8 HOH HOH . F 6 HOH A 7 1207 15 HOH HOH . F 6 HOH A 8 1208 24 HOH HOH . F 6 HOH A 9 1209 5 HOH HOH . F 6 HOH A 10 1210 20 HOH HOH . F 6 HOH A 11 1211 25 HOH HOH . F 6 HOH A 12 1212 11 HOH HOH . F 6 HOH A 13 1213 19 HOH HOH . F 6 HOH A 14 1214 3 HOH HOH . F 6 HOH A 15 1215 10 HOH HOH . F 6 HOH A 16 1216 2 HOH HOH . F 6 HOH A 17 1217 16 HOH HOH . F 6 HOH A 18 1218 27 HOH HOH . F 6 HOH A 19 1219 13 HOH HOH . F 6 HOH A 20 1220 9 HOH HOH . F 6 HOH A 21 1221 6 HOH HOH . F 6 HOH A 22 1222 26 HOH HOH . F 6 HOH A 23 1223 18 HOH HOH . G 6 HOH B 1 301 7 HOH HOH . G 6 HOH B 2 302 1 HOH HOH . G 6 HOH B 3 303 21 HOH HOH . G 6 HOH B 4 304 12 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 5H5 . . . C 3 -23.354 -15.497 43.263 1 108.55 ? C2 5H5 1101 A 1 HETATM 2 C C4 5H5 . . . C 3 -22.229 -16.477 43.428 1 102.74 ? C4 5H5 1101 A 1 HETATM 3 C C6 5H5 . . . C 3 -22.34 -17.139 44.796 1 97.53 ? C6 5H5 1101 A 1 HETATM 4 C C8 5H5 . . . C 3 -20.338 -15.633 42.115 1 97.42 ? C8 5H5 1101 A 1 HETATM 5 C C12 5H5 . . . C 3 -16.677 -13.348 39.933 1 89.23 ? C12 5H5 1101 A 1 HETATM 6 C C15 5H5 . . . C 3 -17.051 -14.645 36.557 1 92.49 ? C15 5H5 1101 A 1 HETATM 7 C C16 5H5 . . . C 3 -18.24 -15.125 36.078 1 95.27 ? C16 5H5 1101 A 1 HETATM 8 C C18 5H5 . . . C 3 -18.446 -15.092 38.214 1 95.79 ? C18 5H5 1101 A 1 HETATM 9 C C19 5H5 . . . C 3 -19.066 -15.261 39.576 1 93.18 ? C19 5H5 1101 A 1 HETATM 10 C C21 5H5 . . . C 3 -20.96 -16.041 40.928 1 98.84 ? C21 5H5 1101 A 1 HETATM 11 C C24 5H5 . . . C 3 -18.32 -15.107 32.484 1 101.69 ? C24 5H5 1101 A 1 HETATM 12 C C27 5H5 . . . C 3 -20.58 -16.932 34.648 1 100.01 ? C27 5H5 1101 A 1 HETATM 13 N N1 5H5 . . . C 3 -23.195 -14.172 43.754 1 102.55 ? N1 5H5 1101 A 1 HETATM 14 O O3 5H5 . . . C 3 -24.388 -15.851 42.712 1 108.23 ? O3 5H5 1101 A 1 HETATM 15 O O7 5H5 . . . C 3 -20.964 -15.817 43.323 1 103.11 ? O7 5H5 1101 A 1 HETATM 16 C C9 5H5 . . . C 3 -19.073 -15.032 42.076 1 92.87 ? C9 5H5 1101 A 1 HETATM 17 C C10 5H5 . . . C 3 -18.406 -14.829 40.86 1 92.47 ? C10 5H5 1101 A 1 HETATM 18 O O11 5H5 . . . C 3 -17.175 -14.231 40.927 1 91.24 ? O11 5H5 1101 A 1 HETATM 19 C C13 5H5 . . . C 3 -16.132 -14.181 38.784 1 89.43 ? C13 5H5 1101 A 1 HETATM 20 N N14 5H5 . . . C 3 -17.199 -14.636 37.89 1 93.14 ? N14 5H5 1101 A 1 HETATM 21 N N17 5H5 . . . C 3 -19.097 -15.403 37.061 1 96.88 ? N17 5H5 1101 A 1 HETATM 22 C C20 5H5 . . . C 3 -20.339 -15.86 39.684 1 92.91 ? C20 5H5 1101 A 1 HETATM 23 C C22 5H5 . . . C 3 -18.522 -15.311 34.621 1 101.27 ? C22 5H5 1101 A 1 HETATM 24 N N23 5H5 . . . C 3 -17.782 -14.712 33.669 1 102.48 ? N23 5H5 1101 A 1 HETATM 25 N N25 5H5 . . . C 3 -19.373 -15.94 32.716 1 98.33 ? N25 5H5 1101 A 1 HETATM 26 N N26 5H5 . . . C 3 -19.491 -16.062 34.108 1 98.06 ? N26 5H5 1101 A 1 HETATM 27 C C28 5H5 . . . C 3 -20.101 -18.379 34.613 1 99.98 ? C28 5H5 1101 A 1 HETATM 28 C C29 5H5 . . . C 3 -21.902 -16.776 33.897 1 114.9 ? C29 5H5 1101 A 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 438 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 28 #