data_9B5I # _model_server_result.job_id xTgtSHPHa9G7JGrQUkrSEQ _model_server_result.datetime_utc '2025-03-05 19:12:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9b5i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1103}' # _entry.id 9B5I # _exptl.entry_id 9B5I _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 175.959 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PYROPHOSPHATE 2-' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9B5I _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9B5I _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 582 A CYS 593 1_555 I C03 A1AIV . D A1AIV 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.773 ? covale ? covale2 B OXT GLY 76 B GLY 76 1_555 H P AMP . B AMP 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.655 ? covale ? covale3 C SG CYS 85 C CYS 85 1_555 I C03 A1AIV . D A1AIV 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.772 ? covale ? covale4 D C GLY 1 D GLY 75 1_555 I N01 A1AIV . D A1AIV 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? metalc ? metalc1 A OD2 ASP 454 A ASP 465 1_555 F MG MG . A MG 1102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc2 A OD2 ASP 526 A ASP 537 1_555 E MG MG . A MG 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc3 E MG MG . A MG 1101 1_555 G O2 POP . A POP 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? metalc ? metalc4 E MG MG . A MG 1101 1_555 G O6 POP . A POP 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? metalc ? metalc5 E MG MG . A MG 1101 1_555 H O1P AMP . B AMP 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc6 F MG MG . A MG 1102 1_555 G O4 POP . A POP 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? # _chem_comp.formula 'H2 O7 P2 -2' _chem_comp.formula_weight 175.959 _chem_comp.id POP _chem_comp.mon_nstd_flag . _chem_comp.name 'PYROPHOSPHATE 2-' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P1 O1 POP doub 310 n n P1 O2 POP sing 311 n n P1 O3 POP sing 312 n n P1 O POP sing 313 n n O2 HO2 POP sing 314 n n O P2 POP sing 315 n n P2 O4 POP doub 316 n n P2 O5 POP sing 317 n n P2 O6 POP sing 318 n n O5 HO5 POP sing 319 n n # _atom_sites.entry_id 9B5I _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 MG A 1 1101 1101 MG MG . F 5 MG A 1 1102 1102 MG MG . G 6 POP A 1 1103 1103 POP POP . H 7 AMP B 1 101 1104 AMP AMP . I 8 A1AIV D 1 201 76 A1AIV LIG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P1 POP . . . G 6 216.005 207.739 209.268 1 129.83 ? P1 POP 1103 A 1 HETATM 2 O O1 POP . . . G 6 216.251 208.788 208.213 1 120.99 ? O1 POP 1103 A 1 HETATM 3 O O2 POP . . . G 6 215.048 206.693 208.755 1 129.08 ? O2 POP 1103 A 1 HETATM 4 O O3 POP . . . G 6 215.376 208.363 210.489 1 123.47 ? O3 POP 1103 A 1 HETATM 5 O O POP . . . G 6 217.397 207.064 209.718 1 126.9 ? O POP 1103 A 1 HETATM 6 P P2 POP . . . G 6 217.665 205.474 209.711 1 130.81 ? P2 POP 1103 A 1 HETATM 7 O O4 POP . . . G 6 218.838 205.207 208.8 1 125.17 ? O4 POP 1103 A 1 HETATM 8 O O5 POP . . . G 6 217.995 205.012 211.108 1 119.44 ? O5 POP 1103 A 1 HETATM 9 O O6 POP . . . G 6 216.468 204.715 209.194 1 124.77 ? O6 POP 1103 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 9 #