data_9B6G
#
_model_server_result.job_id            g5YgrG57CxOY9IbfU3bvoA 
_model_server_result.datetime_utc      '2025-02-20 09:12:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9b6g 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"CA","auth_seq_id":1204}' 
#
_entry.id    9B6G 
#
_exptl.entry_id    9B6G 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              394.53 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            N-(3-aminopropyl)-2-[(3-methylphenyl)methoxy]-N-[(thiophen-2-yl)methyl]benzamide 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9B6G 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9B6G 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 H N N 
? 3 O N N 
? 3 V N N 
? 3 CA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 304 A CYS 303 1_555 A SG CYS 327 A CYS 326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf2 A SG CYS 930 A CYS 929 1_555 A SG CYS 941 A CYS 940 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf3 B SG CYS 304 B CYS 303 1_555 B SG CYS 327 B CYS 326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf4 B SG CYS 930 B CYS 929 1_555 B SG CYS 941 B CYS 940 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf5 C SG CYS 304 C CYS 303 1_555 C SG CYS 327 C CYS 326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf6 C SG CYS 930 C CYS 929 1_555 C SG CYS 941 C CYS 940 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf7 D SG CYS 304 D CYS 303 1_555 D SG CYS 327 D CYS 326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf8 D SG CYS 930 D CYS 929 1_555 D SG CYS 941 D CYS 940 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
#
_chem_comp.formula           'C23 H26 N2 O2 S' 
_chem_comp.formula_weight    394.53 
_chem_comp.id                LQ7 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-(3-aminopropyl)-2-[(3-methylphenyl)methoxy]-N-[(thiophen-2-yl)methyl]benzamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C07 C08 LQ7 doub 192 n y 
C07 C06 LQ7 sing 193 n y 
C08 S09 LQ7 sing 194 n y 
C06 C05 LQ7 doub 195 n y 
S09 C05 LQ7 sing 196 n y 
C12 N13 LQ7 sing 197 n n 
C12 C11 LQ7 sing 198 n n 
C11 C10 LQ7 sing 199 n n 
C05 C04 LQ7 sing 200 n n 
C04 N03 LQ7 sing 201 n n 
C10 N03 LQ7 sing 202 n n 
C28 C27 LQ7 doub 203 n y 
C28 C14 LQ7 sing 204 n y 
N03 C02 LQ7 sing 205 n n 
C27 C26 LQ7 sing 206 n y 
C02 O01 LQ7 doub 207 n n 
C02 C14 LQ7 sing 208 n n 
C14 C15 LQ7 doub 209 n y 
C26 C25 LQ7 doub 210 n y 
C15 C25 LQ7 sing 211 n y 
C15 O16 LQ7 sing 212 n n 
O16 C17 LQ7 sing 213 n n 
C17 C18 LQ7 sing 214 n n 
C24 C18 LQ7 doub 215 n y 
C24 C23 LQ7 sing 216 n y 
C18 C19 LQ7 sing 217 n y 
C23 C22 LQ7 doub 218 n y 
C19 C20 LQ7 doub 219 n y 
C22 C20 LQ7 sing 220 n y 
C20 C21 LQ7 sing 221 n n 
C04 H042 LQ7 sing 222 n n 
C04 H041 LQ7 sing 223 n n 
C06 H061 LQ7 sing 224 n n 
C07 H071 LQ7 sing 225 n n 
C08 H081 LQ7 sing 226 n n 
C10 H101 LQ7 sing 227 n n 
C10 H102 LQ7 sing 228 n n 
C11 H111 LQ7 sing 229 n n 
C11 H112 LQ7 sing 230 n n 
C12 H122 LQ7 sing 231 n n 
C12 H121 LQ7 sing 232 n n 
C17 H172 LQ7 sing 233 n n 
C17 H171 LQ7 sing 234 n n 
C19 H191 LQ7 sing 235 n n 
C21 H212 LQ7 sing 236 n n 
C21 H211 LQ7 sing 237 n n 
C21 H213 LQ7 sing 238 n n 
C22 H221 LQ7 sing 239 n n 
C23 H231 LQ7 sing 240 n n 
C24 H241 LQ7 sing 241 n n 
C25 H251 LQ7 sing 242 n n 
C26 H261 LQ7 sing 243 n n 
C27 H271 LQ7 sing 244 n n 
C28 H281 LQ7 sing 245 n n 
N13 H131 LQ7 sing 246 n n 
N13 H132 LQ7 sing 247 n n 
#
_atom_sites.entry_id                     9B6G 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 Y01 A 1 1201 1201 Y01 Y01 . 
F 2 Y01 A 1 1202 1202 Y01 Y01 . 
G 2 Y01 A 1 1203 1203 Y01 Y01 . 
H 3 LQ7 A 1 1204 1204 LQ7 LQ7 . 
I 2 Y01 A 1 1205 1205 Y01 Y01 . 
J 2 Y01 A 1 1206 1206 Y01 Y01 . 
K 4 NAG A 1 1207 1207 NAG NAG . 
L 2 Y01 B 1 1201 1201 Y01 Y01 . 
M 2 Y01 B 1 1202 1202 Y01 Y01 . 
N 2 Y01 B 1 1203 1203 Y01 Y01 . 
O 3 LQ7 B 1 1204 1204 LQ7 LQ7 . 
P 2 Y01 B 1 1205 1205 Y01 Y01 . 
Q 2 Y01 B 1 1206 1206 Y01 Y01 . 
R 4 NAG B 1 1207 1207 NAG NAG . 
S 2 Y01 C 1 1201 1201 Y01 Y01 . 
T 2 Y01 C 1 1202 1202 Y01 Y01 . 
U 2 Y01 C 1 1203 1203 Y01 Y01 . 
V 3 LQ7 C 1 1204 1204 LQ7 LQ7 . 
W 2 Y01 C 1 1205 1205 Y01 Y01 . 
X 2 Y01 C 1 1206 1206 Y01 Y01 . 
Y 4 NAG C 1 1207 1207 NAG NAG . 
Z 2 Y01 D 1 1201 1201 Y01 Y01 . 
AA 2 Y01 D 1 1202 1202 Y01 Y01 . 
BA 2 Y01 D 1 1203 1203 Y01 Y01 . 
CA 3 LQ7 D 1 1204 1204 LQ7 LQ7 . 
DA 2 Y01 D 1 1205 1205 Y01 Y01 . 
EA 2 Y01 D 1 1206 1206 Y01 Y01 . 
FA 4 NAG D 1 1207 1207 NAG NAG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C02 LQ7 . . . CA 3 209.092 174.383 206.255 1 95 ? C02 LQ7 1204 D 1 
HETATM 2 C C04 LQ7 . . . CA 3 211.122 174.637 207.779 1 93.05 ? C04 LQ7 1204 D 1 
HETATM 3 C C05 LQ7 . . . CA 3 212.237 173.706 207.306 1 94.71 ? C05 LQ7 1204 D 1 
HETATM 4 C C06 LQ7 . . . CA 3 213.561 173.678 207.846 1 92.87 ? C06 LQ7 1204 D 1 
HETATM 5 C C07 LQ7 . . . CA 3 214.393 172.621 207.127 1 97.4 ? C07 LQ7 1204 D 1 
HETATM 6 C C08 LQ7 . . . CA 3 213.594 171.974 206.129 1 103.18 ? C08 LQ7 1204 D 1 
HETATM 7 C C10 LQ7 . . . CA 3 210.691 176.283 205.951 1 97.22 ? C10 LQ7 1204 D 1 
HETATM 8 C C11 LQ7 . . . CA 3 210.08 177.516 206.614 1 97.07 ? C11 LQ7 1204 D 1 
HETATM 9 C C12 LQ7 . . . CA 3 210.078 178.732 205.687 1 99.05 ? C12 LQ7 1204 D 1 
HETATM 10 C C14 LQ7 . . . CA 3 208.602 173.112 206.95 1 96.74 ? C14 LQ7 1204 D 1 
HETATM 11 C C15 LQ7 . . . CA 3 208.064 173.159 208.229 1 95.99 ? C15 LQ7 1204 D 1 
HETATM 12 C C17 LQ7 . . . CA 3 208.304 174.311 210.273 1 96.09 ? C17 LQ7 1204 D 1 
HETATM 13 C C18 LQ7 . . . CA 3 208.497 175.723 210.818 1 94.93 ? C18 LQ7 1204 D 1 
HETATM 14 C C19 LQ7 . . . CA 3 207.53 176.282 211.634 1 89.41 ? C19 LQ7 1204 D 1 
HETATM 15 C C20 LQ7 . . . CA 3 207.701 177.561 212.132 1 90.23 ? C20 LQ7 1204 D 1 
HETATM 16 C C21 LQ7 . . . CA 3 206.634 178.179 213.03 1 91.6 ? C21 LQ7 1204 D 1 
HETATM 17 C C22 LQ7 . . . CA 3 208.84 178.281 211.816 1 91.6 ? C22 LQ7 1204 D 1 
HETATM 18 C C23 LQ7 . . . CA 3 209.807 177.721 211.001 1 96.17 ? C23 LQ7 1204 D 1 
HETATM 19 C C24 LQ7 . . . CA 3 209.636 176.442 210.502 1 97.58 ? C24 LQ7 1204 D 1 
HETATM 20 C C25 LQ7 . . . CA 3 207.625 171.99 208.833 1 94.29 ? C25 LQ7 1204 D 1 
HETATM 21 C C26 LQ7 . . . CA 3 207.716 170.78 208.163 1 89.68 ? C26 LQ7 1204 D 1 
HETATM 22 C C27 LQ7 . . . CA 3 208.247 170.736 206.885 1 90.35 ? C27 LQ7 1204 D 1 
HETATM 23 C C28 LQ7 . . . CA 3 208.688 171.9 206.279 1 97.06 ? C28 LQ7 1204 D 1 
HETATM 24 N N03 LQ7 . . . CA 3 210.3 175.084 206.668 1 95.57 ? N03 LQ7 1204 D 1 
HETATM 25 N N13 LQ7 . . . CA 3 209.938 179.956 206.451 1 99.77 ? N13 LQ7 1204 D 1 
HETATM 26 O O01 LQ7 . . . CA 3 208.467 174.802 205.34 1 95.44 ? O01 LQ7 1204 D 1 
HETATM 27 O O16 LQ7 . . . CA 3 207.973 174.383 208.912 1 98.43 ? O16 LQ7 1204 D 1 
HETATM 28 S S09 LQ7 . . . CA 3 212.104 172.603 206.131 1 114.4 ? S09 LQ7 1204 D 1 
HETATM 29 H H042 LQ7 . . . CA 3 210.519 174.126 208.519 1 94.57 ? H042 LQ7 1204 D 1 
HETATM 30 H H041 LQ7 . . . CA 3 211.578 175.506 208.243 1 94.49 ? H041 LQ7 1204 D 1 
HETATM 31 H H061 LQ7 . . . CA 3 213.919 174.315 208.645 1 94.36 ? H061 LQ7 1204 D 1 
HETATM 32 H H071 LQ7 . . . CA 3 215.43 172.393 207.339 1 95.25 ? H071 LQ7 1204 D 1 
HETATM 33 H H081 LQ7 . . . CA 3 213.937 171.183 205.472 1 95.99 ? H081 LQ7 1204 D 1 
HETATM 34 H H101 LQ7 . . . CA 3 211.773 176.37 205.964 1 95.56 ? H101 LQ7 1204 D 1 
HETATM 35 H H102 LQ7 . . . CA 3 210.35 176.219 204.925 1 95.14 ? H102 LQ7 1204 D 1 
HETATM 36 H H111 LQ7 . . . CA 3 209.058 177.29 206.9 1 94.16 ? H111 LQ7 1204 D 1 
HETATM 37 H H112 LQ7 . . . CA 3 210.651 177.752 207.505 1 94.54 ? H112 LQ7 1204 D 1 
HETATM 38 H H122 LQ7 . . . CA 3 211.01 178.761 205.133 1 95.95 ? H122 LQ7 1204 D 1 
HETATM 39 H H121 LQ7 . . . CA 3 209.251 178.648 204.989 1 94.63 ? H121 LQ7 1204 D 1 
HETATM 40 H H172 LQ7 . . . CA 3 207.504 173.826 210.821 1 93.83 ? H172 LQ7 1204 D 1 
HETATM 41 H H171 LQ7 . . . CA 3 209.22 173.746 210.395 1 94.21 ? H171 LQ7 1204 D 1 
HETATM 42 H H191 LQ7 . . . CA 3 206.638 175.718 211.882 1 92.6 ? H191 LQ7 1204 D 1 
HETATM 43 H H212 LQ7 . . . CA 3 205.929 178.741 212.424 1 93.77 ? H212 LQ7 1204 D 1 
HETATM 44 H H211 LQ7 . . . CA 3 206.108 177.392 213.559 1 92.5 ? H211 LQ7 1204 D 1 
HETATM 45 H H213 LQ7 . . . CA 3 207.105 178.843 213.747 1 93.14 ? H213 LQ7 1204 D 1 
HETATM 46 H H221 LQ7 . . . CA 3 208.973 179.283 212.206 1 93.62 ? H221 LQ7 1204 D 1 
HETATM 47 H H231 LQ7 . . . CA 3 210.698 178.284 210.754 1 94.66 ? H231 LQ7 1204 D 1 
HETATM 48 H H241 LQ7 . . . CA 3 210.394 176.004 209.865 1 95.06 ? H241 LQ7 1204 D 1 
HETATM 49 H H251 LQ7 . . . CA 3 207.208 172.02 209.833 1 93.96 ? H251 LQ7 1204 D 1 
HETATM 50 H H261 LQ7 . . . CA 3 207.37 169.87 208.639 1 93.4 ? H261 LQ7 1204 D 1 
HETATM 51 H H271 LQ7 . . . CA 3 208.319 169.791 206.36 1 93.46 ? H271 LQ7 1204 D 1 
HETATM 52 H H281 LQ7 . . . CA 3 209.105 171.865 205.279 1 95.38 ? H281 LQ7 1204 D 1 
HETATM 53 H H131 LQ7 . . . CA 3 210.103 179.768 207.421 1 95.99 ? H131 LQ7 1204 D 1 
HETATM 54 H H132 LQ7 . . . CA 3 210.6 180.635 206.123 1 95.61 ? H132 LQ7 1204 D 1 
#
_model_server_stats.io_time_ms              100 
_model_server_stats.parse_time_ms           214 
_model_server_stats.create_model_time_ms    69 
_model_server_stats.query_time_ms           273 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           54 
#