data_9B6G
#
_model_server_result.job_id            bIBRVNLXmnfB8ZuMbc-rCQ 
_model_server_result.datetime_utc      '2025-02-20 09:12:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9b6g 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"FA","auth_seq_id":1207}' 
#
_entry.id    9B6G 
#
_exptl.entry_id    9B6G 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9B6G 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9B6G 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 K N N 
? 4 R N N 
? 4 Y N N 
? 4 FA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 304 A CYS 303 1_555 A SG CYS 327 A CYS 326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf2 A SG CYS 930 A CYS 929 1_555 A SG CYS 941 A CYS 940 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf3 B SG CYS 304 B CYS 303 1_555 B SG CYS 327 B CYS 326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf4 B SG CYS 930 B CYS 929 1_555 B SG CYS 941 B CYS 940 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf5 C SG CYS 304 C CYS 303 1_555 C SG CYS 327 C CYS 326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf6 C SG CYS 930 C CYS 929 1_555 C SG CYS 941 C CYS 940 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf7 D SG CYS 304 D CYS 303 1_555 D SG CYS 327 D CYS 326 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf8 D SG CYS 930 D CYS 929 1_555 D SG CYS 941 D CYS 940 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 291 n n 
C1 O1 NAG sing 292 n n 
C1 O5 NAG sing 293 n n 
C1 H1 NAG sing 294 n n 
C2 C3 NAG sing 295 n n 
C2 N2 NAG sing 296 n n 
C2 H2 NAG sing 297 n n 
C3 C4 NAG sing 298 n n 
C3 O3 NAG sing 299 n n 
C3 H3 NAG sing 300 n n 
C4 C5 NAG sing 301 n n 
C4 O4 NAG sing 302 n n 
C4 H4 NAG sing 303 n n 
C5 C6 NAG sing 304 n n 
C5 O5 NAG sing 305 n n 
C5 H5 NAG sing 306 n n 
C6 O6 NAG sing 307 n n 
C6 H61 NAG sing 308 n n 
C6 H62 NAG sing 309 n n 
C7 C8 NAG sing 310 n n 
C7 N2 NAG sing 311 n n 
C7 O7 NAG doub 312 n n 
C8 H81 NAG sing 313 n n 
C8 H82 NAG sing 314 n n 
C8 H83 NAG sing 315 n n 
N2 HN2 NAG sing 316 n n 
O1 HO1 NAG sing 317 n n 
O3 HO3 NAG sing 318 n n 
O4 HO4 NAG sing 319 n n 
O6 HO6 NAG sing 320 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     9B6G 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 Y01 A 1 1201 1201 Y01 Y01 . 
F 2 Y01 A 1 1202 1202 Y01 Y01 . 
G 2 Y01 A 1 1203 1203 Y01 Y01 . 
H 3 LQ7 A 1 1204 1204 LQ7 LQ7 . 
I 2 Y01 A 1 1205 1205 Y01 Y01 . 
J 2 Y01 A 1 1206 1206 Y01 Y01 . 
K 4 NAG A 1 1207 1207 NAG NAG . 
L 2 Y01 B 1 1201 1201 Y01 Y01 . 
M 2 Y01 B 1 1202 1202 Y01 Y01 . 
N 2 Y01 B 1 1203 1203 Y01 Y01 . 
O 3 LQ7 B 1 1204 1204 LQ7 LQ7 . 
P 2 Y01 B 1 1205 1205 Y01 Y01 . 
Q 2 Y01 B 1 1206 1206 Y01 Y01 . 
R 4 NAG B 1 1207 1207 NAG NAG . 
S 2 Y01 C 1 1201 1201 Y01 Y01 . 
T 2 Y01 C 1 1202 1202 Y01 Y01 . 
U 2 Y01 C 1 1203 1203 Y01 Y01 . 
V 3 LQ7 C 1 1204 1204 LQ7 LQ7 . 
W 2 Y01 C 1 1205 1205 Y01 Y01 . 
X 2 Y01 C 1 1206 1206 Y01 Y01 . 
Y 4 NAG C 1 1207 1207 NAG NAG . 
Z 2 Y01 D 1 1201 1201 Y01 Y01 . 
AA 2 Y01 D 1 1202 1202 Y01 Y01 . 
BA 2 Y01 D 1 1203 1203 Y01 Y01 . 
CA 3 LQ7 D 1 1204 1204 LQ7 LQ7 . 
DA 2 Y01 D 1 1205 1205 Y01 Y01 . 
EA 2 Y01 D 1 1206 1206 Y01 Y01 . 
FA 4 NAG D 1 1207 1207 NAG NAG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . FA 4 182.8 198.034 250.462 1 130.23 ? C1 NAG 1207 D 1 
HETATM 2 C C2 NAG . . . FA 4 181.415 198.597 250.314 1 129.7 ? C2 NAG 1207 D 1 
HETATM 3 C C3 NAG . . . FA 4 180.506 198.164 251.363 1 131.19 ? C3 NAG 1207 D 1 
HETATM 4 C C4 NAG . . . FA 4 180.508 196.695 251.56 1 132.19 ? C4 NAG 1207 D 1 
HETATM 5 C C5 NAG . . . FA 4 181.947 196.137 251.818 1 130.5 ? C5 NAG 1207 D 1 
HETATM 6 C C6 NAG . . . FA 4 181.925 194.729 251.918 1 128.01 ? C6 NAG 1207 D 1 
HETATM 7 C C7 NAG . . . FA 4 182.346 200.838 249.418 1 132.42 ? C7 NAG 1207 D 1 
HETATM 8 C C8 NAG . . . FA 4 182.423 202.362 249.472 1 130.47 ? C8 NAG 1207 D 1 
HETATM 9 N N2 NAG . . . FA 4 181.5 200.123 250.357 1 130.98 ? N2 NAG 1207 D 1 
HETATM 10 O O3 NAG . . . FA 4 179.134 198.59 251.003 1 129.18 ? O3 NAG 1207 D 1 
HETATM 11 O O4 NAG . . . FA 4 179.686 196.38 252.677 1 128.31 ? O4 NAG 1207 D 1 
HETATM 12 O O5 NAG . . . FA 4 182.805 196.574 250.629 1 130.42 ? O5 NAG 1207 D 1 
HETATM 13 O O6 NAG . . . FA 4 181.38 194.199 250.743 1 129.14 ? O6 NAG 1207 D 1 
HETATM 14 O O7 NAG . . . FA 4 182.976 200.243 248.609 1 131.98 ? O7 NAG 1207 D 1 
HETATM 15 H H1 NAG . . . FA 4 183.265 198.484 251.333 1 128.94 ? H1 NAG 1207 D 1 
HETATM 16 H H2 NAG . . . FA 4 181.014 198.29 249.356 1 128.26 ? H2 NAG 1207 D 1 
HETATM 17 H H3 NAG . . . FA 4 180.795 198.64 252.292 1 129.12 ? H3 NAG 1207 D 1 
HETATM 18 H H4 NAG . . . FA 4 180.102 196.225 250.673 1 129.28 ? H4 NAG 1207 D 1 
HETATM 19 H H5 NAG . . . FA 4 182.345 196.567 252.729 1 129.23 ? H5 NAG 1207 D 1 
HETATM 20 H H61 NAG . . . FA 4 181.316 194.435 252.767 1 128.91 ? H61 NAG 1207 D 1 
HETATM 21 H H62 NAG . . . FA 4 182.936 194.359 252.05 1 128.81 ? H62 NAG 1207 D 1 
HETATM 22 H H81 NAG . . . FA 4 183.267 202.703 248.88 1 129.05 ? H81 NAG 1207 D 1 
HETATM 23 H H82 NAG . . . FA 4 182.549 202.683 250.502 1 128.99 ? H82 NAG 1207 D 1 
HETATM 24 H H83 NAG . . . FA 4 181.506 202.786 249.072 1 129.12 ? H83 NAG 1207 D 1 
HETATM 25 H HN2 NAG . . . FA 4 180.971 200.631 251.038 1 129.24 ? HN2 NAG 1207 D 1 
HETATM 26 H HO3 NAG . . . FA 4 179.11 199.529 250.912 1 128.99 ? HO3 NAG 1207 D 1 
HETATM 27 H HO4 NAG . . . FA 4 179.231 195.569 252.514 1 128.96 ? HO4 NAG 1207 D 1 
HETATM 28 H HO6 NAG . . . FA 4 181.136 193.299 250.889 1 128.55 ? HO6 NAG 1207 D 1 
#
_model_server_stats.io_time_ms              24 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    65 
_model_server_stats.query_time_ms           335 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           28 
#