data_9B75 # _model_server_result.job_id cbM2svpjGp4_orE7uQWisA _model_server_result.datetime_utc '2025-07-17 17:45:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9b75 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 9B75 # _exptl.entry_id 9B75 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.42 _cell.angle_gamma 90 _cell.entry_id 9B75 _cell.length_a 36.923 _cell.length_b 84.844 _cell.length_c 64.778 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9B75 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 H CYS 22 1_555 A SG CYS 95 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf2 A SG CYS 147 H CYS 140 1_555 A SG CYS 203 H CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 B SG CYS 23 L CYS 23 1_555 B SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf4 B SG CYS 134 L CYS 134 1_555 B SG CYS 194 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 9B75 _atom_sites.fract_transf_matrix[1][1] 0.027083 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007981 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011786 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016094 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 EDO L 1 301 301 EDO EDO . D 4 HOH H 1 301 56 HOH HOH . D 4 HOH H 2 302 8 HOH HOH . D 4 HOH H 3 303 150 HOH HOH . D 4 HOH H 4 304 190 HOH HOH . D 4 HOH H 5 305 108 HOH HOH . D 4 HOH H 6 306 162 HOH HOH . D 4 HOH H 7 307 171 HOH HOH . D 4 HOH H 8 308 89 HOH HOH . D 4 HOH H 9 309 62 HOH HOH . D 4 HOH H 10 310 39 HOH HOH . D 4 HOH H 11 311 102 HOH HOH . D 4 HOH H 12 312 137 HOH HOH . D 4 HOH H 13 313 104 HOH HOH . D 4 HOH H 14 314 45 HOH HOH . D 4 HOH H 15 315 170 HOH HOH . D 4 HOH H 16 316 34 HOH HOH . D 4 HOH H 17 317 105 HOH HOH . D 4 HOH H 18 318 41 HOH HOH . D 4 HOH H 19 319 194 HOH HOH . D 4 HOH H 20 320 175 HOH HOH . D 4 HOH H 21 321 177 HOH HOH . D 4 HOH H 22 322 128 HOH HOH . D 4 HOH H 23 323 31 HOH HOH . D 4 HOH H 24 324 7 HOH HOH . D 4 HOH H 25 325 54 HOH HOH . D 4 HOH H 26 326 68 HOH HOH . D 4 HOH H 27 327 53 HOH HOH . D 4 HOH H 28 328 6 HOH HOH . D 4 HOH H 29 329 132 HOH HOH . D 4 HOH H 30 330 52 HOH HOH . D 4 HOH H 31 331 125 HOH HOH . D 4 HOH H 32 332 121 HOH HOH . D 4 HOH H 33 333 99 HOH HOH . D 4 HOH H 34 334 33 HOH HOH . D 4 HOH H 35 335 168 HOH HOH . D 4 HOH H 36 336 117 HOH HOH . D 4 HOH H 37 337 32 HOH HOH . D 4 HOH H 38 338 123 HOH HOH . D 4 HOH H 39 339 131 HOH HOH . D 4 HOH H 40 340 70 HOH HOH . D 4 HOH H 41 341 115 HOH HOH . D 4 HOH H 42 342 142 HOH HOH . D 4 HOH H 43 343 101 HOH HOH . D 4 HOH H 44 344 135 HOH HOH . D 4 HOH H 45 345 106 HOH HOH . D 4 HOH H 46 346 49 HOH HOH . D 4 HOH H 47 347 22 HOH HOH . D 4 HOH H 48 348 138 HOH HOH . D 4 HOH H 49 349 18 HOH HOH . D 4 HOH H 50 350 95 HOH HOH . D 4 HOH H 51 351 38 HOH HOH . D 4 HOH H 52 352 136 HOH HOH . D 4 HOH H 53 353 5 HOH HOH . D 4 HOH H 54 354 160 HOH HOH . D 4 HOH H 55 355 29 HOH HOH . D 4 HOH H 56 356 196 HOH HOH . D 4 HOH H 57 357 74 HOH HOH . D 4 HOH H 58 358 198 HOH HOH . D 4 HOH H 59 359 43 HOH HOH . D 4 HOH H 60 360 146 HOH HOH . D 4 HOH H 61 361 87 HOH HOH . D 4 HOH H 62 362 30 HOH HOH . D 4 HOH H 63 363 113 HOH HOH . D 4 HOH H 64 364 139 HOH HOH . D 4 HOH H 65 365 157 HOH HOH . D 4 HOH H 66 366 189 HOH HOH . D 4 HOH H 67 367 83 HOH HOH . D 4 HOH H 68 368 172 HOH HOH . D 4 HOH H 69 369 86 HOH HOH . D 4 HOH H 70 370 93 HOH HOH . D 4 HOH H 71 371 13 HOH HOH . D 4 HOH H 72 372 203 HOH HOH . D 4 HOH H 73 373 97 HOH HOH . D 4 HOH H 74 374 69 HOH HOH . D 4 HOH H 75 375 176 HOH HOH . D 4 HOH H 76 376 130 HOH HOH . D 4 HOH H 77 377 169 HOH HOH . D 4 HOH H 78 378 154 HOH HOH . D 4 HOH H 79 379 91 HOH HOH . D 4 HOH H 80 380 72 HOH HOH . D 4 HOH H 81 381 133 HOH HOH . D 4 HOH H 82 382 163 HOH HOH . D 4 HOH H 83 383 159 HOH HOH . D 4 HOH H 84 384 191 HOH HOH . D 4 HOH H 85 385 161 HOH HOH . D 4 HOH H 86 386 164 HOH HOH . D 4 HOH H 87 387 187 HOH HOH . E 4 HOH L 1 401 165 HOH HOH . E 4 HOH L 2 402 42 HOH HOH . E 4 HOH L 3 403 64 HOH HOH . E 4 HOH L 4 404 100 HOH HOH . E 4 HOH L 5 405 17 HOH HOH . E 4 HOH L 6 406 19 HOH HOH . E 4 HOH L 7 407 21 HOH HOH . E 4 HOH L 8 408 147 HOH HOH . E 4 HOH L 9 409 76 HOH HOH . E 4 HOH L 10 410 98 HOH HOH . E 4 HOH L 11 411 50 HOH HOH . E 4 HOH L 12 412 140 HOH HOH . E 4 HOH L 13 413 141 HOH HOH . E 4 HOH L 14 414 57 HOH HOH . E 4 HOH L 15 415 152 HOH HOH . E 4 HOH L 16 416 37 HOH HOH . E 4 HOH L 17 417 59 HOH HOH . E 4 HOH L 18 418 11 HOH HOH . E 4 HOH L 19 419 151 HOH HOH . E 4 HOH L 20 420 47 HOH HOH . E 4 HOH L 21 421 96 HOH HOH . E 4 HOH L 22 422 27 HOH HOH . E 4 HOH L 23 423 16 HOH HOH . E 4 HOH L 24 424 199 HOH HOH . E 4 HOH L 25 425 12 HOH HOH . E 4 HOH L 26 426 78 HOH HOH . E 4 HOH L 27 427 61 HOH HOH . E 4 HOH L 28 428 126 HOH HOH . E 4 HOH L 29 429 112 HOH HOH . E 4 HOH L 30 430 180 HOH HOH . E 4 HOH L 31 431 48 HOH HOH . E 4 HOH L 32 432 24 HOH HOH . E 4 HOH L 33 433 118 HOH HOH . E 4 HOH L 34 434 119 HOH HOH . E 4 HOH L 35 435 26 HOH HOH . E 4 HOH L 36 436 23 HOH HOH . E 4 HOH L 37 437 25 HOH HOH . E 4 HOH L 38 438 109 HOH HOH . E 4 HOH L 39 439 2 HOH HOH . E 4 HOH L 40 440 4 HOH HOH . E 4 HOH L 41 441 1 HOH HOH . E 4 HOH L 42 442 107 HOH HOH . E 4 HOH L 43 443 75 HOH HOH . E 4 HOH L 44 444 3 HOH HOH . E 4 HOH L 45 445 186 HOH HOH . E 4 HOH L 46 446 158 HOH HOH . E 4 HOH L 47 447 9 HOH HOH . E 4 HOH L 48 448 92 HOH HOH . E 4 HOH L 49 449 10 HOH HOH . E 4 HOH L 50 450 71 HOH HOH . E 4 HOH L 51 451 65 HOH HOH . E 4 HOH L 52 452 63 HOH HOH . E 4 HOH L 53 453 84 HOH HOH . E 4 HOH L 54 454 46 HOH HOH . E 4 HOH L 55 455 184 HOH HOH . E 4 HOH L 56 456 14 HOH HOH . E 4 HOH L 57 457 88 HOH HOH . E 4 HOH L 58 458 178 HOH HOH . E 4 HOH L 59 459 124 HOH HOH . E 4 HOH L 60 460 195 HOH HOH . E 4 HOH L 61 461 192 HOH HOH . E 4 HOH L 62 462 122 HOH HOH . E 4 HOH L 63 463 67 HOH HOH . E 4 HOH L 64 464 114 HOH HOH . E 4 HOH L 65 465 79 HOH HOH . E 4 HOH L 66 466 51 HOH HOH . E 4 HOH L 67 467 116 HOH HOH . E 4 HOH L 68 468 129 HOH HOH . E 4 HOH L 69 469 120 HOH HOH . E 4 HOH L 70 470 111 HOH HOH . E 4 HOH L 71 471 90 HOH HOH . E 4 HOH L 72 472 35 HOH HOH . E 4 HOH L 73 473 66 HOH HOH . E 4 HOH L 74 474 103 HOH HOH . E 4 HOH L 75 475 55 HOH HOH . E 4 HOH L 76 476 183 HOH HOH . E 4 HOH L 77 477 197 HOH HOH . E 4 HOH L 78 478 80 HOH HOH . E 4 HOH L 79 479 77 HOH HOH . E 4 HOH L 80 480 15 HOH HOH . E 4 HOH L 81 481 82 HOH HOH . E 4 HOH L 82 482 134 HOH HOH . E 4 HOH L 83 483 144 HOH HOH . E 4 HOH L 84 484 44 HOH HOH . E 4 HOH L 85 485 94 HOH HOH . E 4 HOH L 86 486 179 HOH HOH . E 4 HOH L 87 487 36 HOH HOH . E 4 HOH L 88 488 193 HOH HOH . E 4 HOH L 89 489 85 HOH HOH . E 4 HOH L 90 490 143 HOH HOH . E 4 HOH L 91 491 73 HOH HOH . E 4 HOH L 92 492 201 HOH HOH . E 4 HOH L 93 493 110 HOH HOH . E 4 HOH L 94 494 28 HOH HOH . E 4 HOH L 95 495 81 HOH HOH . E 4 HOH L 96 496 202 HOH HOH . E 4 HOH L 97 497 166 HOH HOH . E 4 HOH L 98 498 200 HOH HOH . E 4 HOH L 99 499 149 HOH HOH . E 4 HOH L 100 500 185 HOH HOH . E 4 HOH L 101 501 174 HOH HOH . E 4 HOH L 102 502 182 HOH HOH . E 4 HOH L 103 503 156 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . C 3 3.54 -17.299 -22.294 1 48.75 ? C1 EDO 301 L 1 HETATM 2 O O1 EDO . . . C 3 2.149 -17.621 -22.407 1 49.17 ? O1 EDO 301 L 1 HETATM 3 C C2 EDO . . . C 3 3.881 -16.179 -23.271 1 40.05 ? C2 EDO 301 L 1 HETATM 4 O O2 EDO . . . C 3 3.101 -15.021 -22.953 1 48.67 ? O2 EDO 301 L 1 # _model_server_stats.io_time_ms 35 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 4 #