data_9B7F # _model_server_result.job_id '_AG4ZVBBEuZOwBJv5gIzKw' _model_server_result.datetime_utc '2024-11-09 23:17:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9b7f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":204}' # _entry.id 9B7F # _exptl.entry_id 9B7F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9B7F _cell.length_a 78.895 _cell.length_b 78.895 _cell.length_c 36.955 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9B7F _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? disulf ? disulf4 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc1 A O TYR 53 A TYR 53 1_555 P NA NA . A NA 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.567 ? metalc ? metalc2 A O SER 60 A SER 60 1_555 N NA NA . A NA 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc3 A O CYS 64 A CYS 64 1_555 N NA NA . A NA 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc4 A OG SER 72 A SER 72 1_555 N NA NA . A NA 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? metalc ? metalc5 A O ARG 73 A ARG 73 1_555 N NA NA . A NA 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc6 A O ALA 82 A ALA 82 1_555 O NA NA . A NA 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.601 ? metalc ? metalc7 A O ASP 87 A ASP 87 1_555 O NA NA . A NA 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.596 ? metalc ? metalc8 A OG SER 91 A SER 91 1_555 P NA NA . A NA 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.659 ? metalc ? metalc9 N NA NA . A NA 213 1_555 R O HOH . A HOH 368 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.49 ? metalc ? metalc10 N NA NA . A NA 213 1_555 R O HOH . A HOH 377 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? metalc ? metalc11 O NA NA . A NA 214 1_555 R O HOH . A HOH 327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.088 ? metalc ? metalc12 Q NA NA . A NA 216 1_555 R O HOH . A HOH 334 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.057 ? metalc ? metalc13 Q NA NA . A NA 216 1_555 R O HOH . A HOH 360 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.864 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 9B7F _atom_sites.fract_transf_matrix[1][1] 0.012675 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012675 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02706 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 201 201 EDO EDO . C 2 EDO A 1 202 202 EDO EDO . D 2 EDO A 1 203 203 EDO EDO . E 2 EDO A 1 204 204 EDO EDO . F 3 CL A 1 205 1 CL CL . G 3 CL A 1 206 2 CL CL . H 3 CL A 1 207 3 CL CL . I 3 CL A 1 208 4 CL CL . J 3 CL A 1 209 5 CL CL . K 3 CL A 1 210 6 CL CL . L 3 CL A 1 211 7 CL CL . M 3 CL A 1 212 8 CL CL . N 4 NA A 1 213 2 NA NA . O 4 NA A 1 214 3 NA NA . P 4 NA A 1 215 4 NA NA . Q 4 NA A 1 216 5 NA NA . R 5 HOH A 1 301 67 HOH HOH . R 5 HOH A 2 302 143 HOH HOH . R 5 HOH A 3 303 105 HOH HOH . R 5 HOH A 4 304 94 HOH HOH . R 5 HOH A 5 305 126 HOH HOH . R 5 HOH A 6 306 79 HOH HOH . R 5 HOH A 7 307 128 HOH HOH . R 5 HOH A 8 308 95 HOH HOH . R 5 HOH A 9 309 42 HOH HOH . R 5 HOH A 10 310 28 HOH HOH . R 5 HOH A 11 311 99 HOH HOH . R 5 HOH A 12 312 140 HOH HOH . R 5 HOH A 13 313 81 HOH HOH . R 5 HOH A 14 314 45 HOH HOH . R 5 HOH A 15 315 16 HOH HOH . R 5 HOH A 16 316 35 HOH HOH . R 5 HOH A 17 317 97 HOH HOH . R 5 HOH A 18 318 65 HOH HOH . R 5 HOH A 19 319 137 HOH HOH . R 5 HOH A 20 320 138 HOH HOH . R 5 HOH A 21 321 36 HOH HOH . R 5 HOH A 22 322 38 HOH HOH . R 5 HOH A 23 323 88 HOH HOH . R 5 HOH A 24 324 103 HOH HOH . R 5 HOH A 25 325 90 HOH HOH . R 5 HOH A 26 326 96 HOH HOH . R 5 HOH A 27 327 40 HOH HOH . R 5 HOH A 28 328 107 HOH HOH . R 5 HOH A 29 329 13 HOH HOH . R 5 HOH A 30 330 104 HOH HOH . R 5 HOH A 31 331 82 HOH HOH . R 5 HOH A 32 332 113 HOH HOH . R 5 HOH A 33 333 139 HOH HOH . R 5 HOH A 34 334 24 HOH HOH . R 5 HOH A 35 335 111 HOH HOH . R 5 HOH A 36 336 141 HOH HOH . R 5 HOH A 37 337 14 HOH HOH . R 5 HOH A 38 338 66 HOH HOH . R 5 HOH A 39 339 55 HOH HOH . R 5 HOH A 40 340 51 HOH HOH . R 5 HOH A 41 341 118 HOH HOH . R 5 HOH A 42 342 29 HOH HOH . R 5 HOH A 43 343 53 HOH HOH . R 5 HOH A 44 344 63 HOH HOH . R 5 HOH A 45 345 21 HOH HOH . R 5 HOH A 46 346 89 HOH HOH . R 5 HOH A 47 347 132 HOH HOH . R 5 HOH A 48 348 32 HOH HOH . R 5 HOH A 49 349 136 HOH HOH . R 5 HOH A 50 350 20 HOH HOH . R 5 HOH A 51 351 114 HOH HOH . R 5 HOH A 52 352 115 HOH HOH . R 5 HOH A 53 353 52 HOH HOH . R 5 HOH A 54 354 73 HOH HOH . R 5 HOH A 55 355 43 HOH HOH . R 5 HOH A 56 356 62 HOH HOH . R 5 HOH A 57 357 87 HOH HOH . R 5 HOH A 58 358 31 HOH HOH . R 5 HOH A 59 359 83 HOH HOH . R 5 HOH A 60 360 72 HOH HOH . R 5 HOH A 61 361 56 HOH HOH . R 5 HOH A 62 362 59 HOH HOH . R 5 HOH A 63 363 70 HOH HOH . R 5 HOH A 64 364 23 HOH HOH . R 5 HOH A 65 365 18 HOH HOH . R 5 HOH A 66 366 50 HOH HOH . R 5 HOH A 67 367 17 HOH HOH . R 5 HOH A 68 368 135 HOH HOH . R 5 HOH A 69 369 22 HOH HOH . R 5 HOH A 70 370 77 HOH HOH . R 5 HOH A 71 371 93 HOH HOH . R 5 HOH A 72 372 84 HOH HOH . R 5 HOH A 73 373 46 HOH HOH . R 5 HOH A 74 374 26 HOH HOH . R 5 HOH A 75 375 44 HOH HOH . R 5 HOH A 76 376 102 HOH HOH . R 5 HOH A 77 377 27 HOH HOH . R 5 HOH A 78 378 58 HOH HOH . R 5 HOH A 79 379 25 HOH HOH . R 5 HOH A 80 380 76 HOH HOH . R 5 HOH A 81 381 116 HOH HOH . R 5 HOH A 82 382 39 HOH HOH . R 5 HOH A 83 383 91 HOH HOH . R 5 HOH A 84 384 47 HOH HOH . R 5 HOH A 85 385 112 HOH HOH . R 5 HOH A 86 386 71 HOH HOH . R 5 HOH A 87 387 117 HOH HOH . R 5 HOH A 88 388 48 HOH HOH . R 5 HOH A 89 389 49 HOH HOH . R 5 HOH A 90 390 11 HOH HOH . R 5 HOH A 91 391 122 HOH HOH . R 5 HOH A 92 392 123 HOH HOH . R 5 HOH A 93 393 75 HOH HOH . R 5 HOH A 94 394 30 HOH HOH . R 5 HOH A 95 395 142 HOH HOH . R 5 HOH A 96 396 15 HOH HOH . R 5 HOH A 97 397 34 HOH HOH . R 5 HOH A 98 398 68 HOH HOH . R 5 HOH A 99 399 60 HOH HOH . R 5 HOH A 100 400 134 HOH HOH . R 5 HOH A 101 401 108 HOH HOH . R 5 HOH A 102 402 129 HOH HOH . R 5 HOH A 103 403 69 HOH HOH . R 5 HOH A 104 404 80 HOH HOH . R 5 HOH A 105 405 100 HOH HOH . R 5 HOH A 106 406 37 HOH HOH . R 5 HOH A 107 407 57 HOH HOH . R 5 HOH A 108 408 86 HOH HOH . R 5 HOH A 109 409 92 HOH HOH . R 5 HOH A 110 410 85 HOH HOH . R 5 HOH A 111 411 125 HOH HOH . R 5 HOH A 112 412 78 HOH HOH . R 5 HOH A 113 413 110 HOH HOH . R 5 HOH A 114 414 127 HOH HOH . R 5 HOH A 115 415 54 HOH HOH . R 5 HOH A 116 416 133 HOH HOH . R 5 HOH A 117 417 121 HOH HOH . R 5 HOH A 118 418 120 HOH HOH . R 5 HOH A 119 419 124 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 2 12.512 -12.337 8.718 0.5 27.42 ? C1 EDO 204 A 1 HETATM 2 O O1 EDO . . . E 2 12.298 -10.983 8.376 0.5 27.24 ? O1 EDO 204 A 1 HETATM 3 C C2 EDO . . . E 2 11.741 -12.752 9.923 0.5 27.03 ? C2 EDO 204 A 1 HETATM 4 O O2 EDO . . . E 2 10.546 -12.017 10.142 0.5 27.82 ? O2 EDO 204 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 252 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #