data_9B81
#
_model_server_result.job_id            LHnWjaGRlBs3p0SHrtmYgw 
_model_server_result.datetime_utc      '2025-06-30 17:41:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9b81 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":500}' 
#
_entry.id    9B81 
#
_exptl.entry_id    9B81 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              480.482 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-methyl-2-(6-{4-[(2S)-1,1,1-trifluoro-2-hydroxypropan-2-yl]benzoyl}-6,11-dihydro-5H-pyrido[2,3-b][1,5]benzodiazepin-8-yl)propanenitrile 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9B81 
_cell.length_a            82.79 
_cell.length_b            82.79 
_cell.length_c            302.16 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9B81 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 F N N 
#
_chem_comp.formula           'C26 H23 F3 N4 O2' 
_chem_comp.formula_weight    480.482 
_chem_comp.id                A1AI4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-methyl-2-(6-{4-[(2S)-1,1,1-trifluoro-2-hydroxypropan-2-yl]benzoyl}-6,11-dihydro-5H-pyrido[2,3-b][1,5]benzodiazepin-8-yl)propanenitrile 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C3 C2 A1AI4 doub 1 n y 
C3 C4 A1AI4 sing 2 n y 
C2 C1 A1AI4 sing 3 n y 
C34 C31 A1AI4 sing 4 n n 
N11 C4 A1AI4 sing 5 n n 
N11 C10 A1AI4 sing 6 n n 
N12 C10 A1AI4 doub 7 n y 
N12 C13 A1AI4 sing 8 n y 
N33 C32 A1AI4 trip 9 n n 
C4 C5 A1AI4 doub 10 n y 
C10 C9 A1AI4 sing 11 n y 
C13 C14 A1AI4 doub 12 n y 
C32 C31 A1AI4 sing 13 n n 
C9 C8 A1AI4 sing 14 n n 
C9 C15 A1AI4 doub 15 n y 
C14 C15 A1AI4 sing 16 n y 
C1 C31 A1AI4 sing 17 n n 
C1 C6 A1AI4 doub 18 n y 
C8 N7 A1AI4 sing 19 n n 
C31 C35 A1AI4 sing 20 n n 
C5 C6 A1AI4 sing 21 n y 
C5 N7 A1AI4 sing 22 n n 
N7 C16 A1AI4 sing 23 n n 
C16 O30 A1AI4 doub 24 n n 
C16 C17 A1AI4 sing 25 n n 
C17 C18 A1AI4 doub 26 n y 
C17 C22 A1AI4 sing 27 n y 
C18 C19 A1AI4 sing 28 n y 
C22 C21 A1AI4 doub 29 n y 
C19 C20 A1AI4 doub 30 n y 
C21 C20 A1AI4 sing 31 n y 
C20 C23 A1AI4 sing 32 n n 
C24 C23 A1AI4 sing 33 n n 
C23 O25 A1AI4 sing 34 n n 
C23 C26 A1AI4 sing 35 n n 
F28 C26 A1AI4 sing 36 n n 
C26 F27 A1AI4 sing 37 n n 
C26 F29 A1AI4 sing 38 n n 
C14 H1 A1AI4 sing 39 n n 
C18 H2 A1AI4 sing 40 n n 
C22 H3 A1AI4 sing 41 n n 
C15 H4 A1AI4 sing 42 n n 
C19 H5 A1AI4 sing 43 n n 
C21 H6 A1AI4 sing 44 n n 
C2 H7 A1AI4 sing 45 n n 
C3 H8 A1AI4 sing 46 n n 
C6 H9 A1AI4 sing 47 n n 
C13 H10 A1AI4 sing 48 n n 
C8 H11 A1AI4 sing 49 n n 
C8 H12 A1AI4 sing 50 n n 
C34 H13 A1AI4 sing 51 n n 
C34 H14 A1AI4 sing 52 n n 
C34 H15 A1AI4 sing 53 n n 
C35 H16 A1AI4 sing 54 n n 
C35 H17 A1AI4 sing 55 n n 
C35 H18 A1AI4 sing 56 n n 
C24 H19 A1AI4 sing 57 n n 
C24 H20 A1AI4 sing 58 n n 
C24 H21 A1AI4 sing 59 n n 
N11 H22 A1AI4 sing 60 n n 
O25 H23 A1AI4 sing 61 n n 
#
_atom_sites.entry_id                     9B81 
_atom_sites.fract_transf_matrix[1][1]    0.012079 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012079 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00331 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 A1AI4 A 1 501 500 A1AI4 UNL . 
D 3 NAP A 1 502 501 NAP NDP . 
E 4 GOL A 1 503 1 GOL GOL . 
F 2 A1AI4 B 1 500 500 A1AI4 UNL . 
G 3 NAP B 1 501 501 NAP NDP . 
H 5 HOH A 1 601 44 HOH HOH . 
H 5 HOH A 2 602 10 HOH HOH . 
H 5 HOH A 3 603 35 HOH HOH . 
H 5 HOH A 4 604 24 HOH HOH . 
H 5 HOH A 5 605 17 HOH HOH . 
H 5 HOH A 6 606 22 HOH HOH . 
H 5 HOH A 7 607 30 HOH HOH . 
H 5 HOH A 8 608 13 HOH HOH . 
H 5 HOH A 9 609 19 HOH HOH . 
H 5 HOH A 10 610 33 HOH HOH . 
H 5 HOH A 11 611 31 HOH HOH . 
H 5 HOH A 12 612 21 HOH HOH . 
H 5 HOH A 13 613 34 HOH HOH . 
H 5 HOH A 14 614 36 HOH HOH . 
H 5 HOH A 15 615 25 HOH HOH . 
H 5 HOH A 16 616 2 HOH HOH . 
H 5 HOH A 17 617 5 HOH HOH . 
H 5 HOH A 18 618 14 HOH HOH . 
H 5 HOH A 19 619 6 HOH HOH . 
H 5 HOH A 20 620 1 HOH HOH . 
H 5 HOH A 21 621 29 HOH HOH . 
H 5 HOH A 22 622 37 HOH HOH . 
H 5 HOH A 23 623 40 HOH HOH . 
H 5 HOH A 24 624 9 HOH HOH . 
H 5 HOH A 25 625 15 HOH HOH . 
H 5 HOH A 26 626 28 HOH HOH . 
I 5 HOH B 1 601 46 HOH HOH . 
I 5 HOH B 2 602 45 HOH HOH . 
I 5 HOH B 3 603 43 HOH HOH . 
I 5 HOH B 4 604 38 HOH HOH . 
I 5 HOH B 5 605 47 HOH HOH . 
I 5 HOH B 6 606 32 HOH HOH . 
I 5 HOH B 7 607 7 HOH HOH . 
I 5 HOH B 8 608 23 HOH HOH . 
I 5 HOH B 9 609 41 HOH HOH . 
I 5 HOH B 10 610 20 HOH HOH . 
I 5 HOH B 11 611 3 HOH HOH . 
I 5 HOH B 12 612 26 HOH HOH . 
I 5 HOH B 13 613 4 HOH HOH . 
I 5 HOH B 14 614 16 HOH HOH . 
I 5 HOH B 15 615 18 HOH HOH . 
I 5 HOH B 16 616 11 HOH HOH . 
I 5 HOH B 17 617 39 HOH HOH . 
I 5 HOH B 18 618 42 HOH HOH . 
I 5 HOH B 19 619 8 HOH HOH . 
I 5 HOH B 20 620 12 HOH HOH . 
I 5 HOH B 21 621 27 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C32 A1AI4 . . . F 2 28.658 -10.139 10.173 1 65.51 ? C32 A1AI4 500 B 1 
HETATM 2 C C14 A1AI4 . . . F 2 19.65 -14.755 8.978 1 55.32 ? C14 A1AI4 500 B 1 
HETATM 3 C C18 A1AI4 . . . F 2 24.88 -12.925 6.095 1 69.06 ? C18 A1AI4 500 B 1 
HETATM 4 C C22 A1AI4 . . . F 2 24.56 -10.729 5.161 1 70.72 ? C22 A1AI4 500 B 1 
HETATM 5 C C15 A1AI4 . . . F 2 20.085 -13.46 8.782 1 56.13 ? C15 A1AI4 500 B 1 
HETATM 6 C C19 A1AI4 . . . F 2 26.021 -13.065 5.335 1 72.24 ? C19 A1AI4 500 B 1 
HETATM 7 C C21 A1AI4 . . . F 2 25.697 -10.892 4.408 1 73.83 ? C21 A1AI4 500 B 1 
HETATM 8 C C2 A1AI4 . . . F 2 26.529 -11.834 10.481 1 59.45 ? C2 A1AI4 500 B 1 
HETATM 9 C C3 A1AI4 . . . F 2 25.566 -12.805 10.634 1 58.59 ? C3 A1AI4 500 B 1 
HETATM 10 C C6 A1AI4 . . . F 2 25.178 -10.762 8.857 1 58.84 ? C6 A1AI4 500 B 1 
HETATM 11 C C13 A1AI4 . . . F 2 20.52 -15.649 9.559 1 55.58 ? C13 A1AI4 500 B 1 
HETATM 12 C C17 A1AI4 . . . F 2 24.167 -11.747 6.001 1 68.64 ? C17 A1AI4 500 B 1 
HETATM 13 C C9 A1AI4 . . . F 2 21.372 -13.11 9.139 1 57.35 ? C9 A1AI4 500 B 1 
HETATM 14 C C20 A1AI4 . . . F 2 26.444 -12.052 4.487 1 75.92 ? C20 A1AI4 500 B 1 
HETATM 15 C C1 A1AI4 . . . F 2 26.356 -10.797 9.588 1 60.59 ? C1 A1AI4 500 B 1 
HETATM 16 C C4 A1AI4 . . . F 2 24.397 -12.766 9.907 1 57.62 ? C4 A1AI4 500 B 1 
HETATM 17 C C5 A1AI4 . . . F 2 24.205 -11.741 8.986 1 59.43 ? C5 A1AI4 500 B 1 
HETATM 18 C C10 A1AI4 . . . F 2 22.197 -14.078 9.704 1 58.16 ? C10 A1AI4 500 B 1 
HETATM 19 C C16 A1AI4 . . . F 2 22.953 -11.502 6.79 1 65.85 ? C16 A1AI4 500 B 1 
HETATM 20 C C8 A1AI4 . . . F 2 21.786 -11.701 8.906 1 58.08 ? C8 A1AI4 500 B 1 
HETATM 21 C C34 A1AI4 . . . F 2 27.012 -8.379 9.867 1 62.94 ? C34 A1AI4 500 B 1 
HETATM 22 C C35 A1AI4 . . . F 2 27.876 -9.71 7.986 1 63.28 ? C35 A1AI4 500 B 1 
HETATM 23 C C24 A1AI4 . . . F 2 28.876 -12.592 4.49 1 80.41 ? C24 A1AI4 500 B 1 
HETATM 24 C C31 A1AI4 . . . F 2 27.452 -9.763 9.439 1 63.49 ? C31 A1AI4 500 B 1 
HETATM 25 C C23 A1AI4 . . . F 2 27.691 -12.162 3.651 1 81.04 ? C23 A1AI4 500 B 1 
HETATM 26 C C26 A1AI4 . . . F 2 27.453 -13.024 2.427 1 87.56 ? C26 A1AI4 500 B 1 
HETATM 27 N N33 A1AI4 . . . F 2 29.614 -10.458 10.748 1 68.45 ? N33 A1AI4 500 B 1 
HETATM 28 N N12 A1AI4 . . . F 2 21.764 -15.333 9.936 1 57.37 ? N12 A1AI4 500 B 1 
HETATM 29 N N11 A1AI4 . . . F 2 23.533 -13.849 10.1 1 57.1 ? N11 A1AI4 500 B 1 
HETATM 30 N N7 A1AI4 . . . F 2 23.023 -11.672 8.182 1 61.71 ? N7 A1AI4 500 B 1 
HETATM 31 O O30 A1AI4 . . . F 2 21.968 -11.127 6.164 1 66.17 ? O30 A1AI4 500 B 1 
HETATM 32 O O25 A1AI4 . . . F 2 28.076 -10.874 3.183 1 81.3 ? O25 A1AI4 500 B 1 
HETATM 33 F F27 A1AI4 . . . F 2 26.399 -12.533 1.712 1 89.59 ? F27 A1AI4 500 B 1 
HETATM 34 F F28 A1AI4 . . . F 2 27.17 -14.32 2.739 1 89.11 ? F28 A1AI4 500 B 1 
HETATM 35 F F29 A1AI4 . . . F 2 28.546 -13.02 1.614 1 89.95 ? F29 A1AI4 500 B 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           294 
_model_server_stats.encode_time_ms          18 
_model_server_stats.element_count           35 
#