data_9B81 # _model_server_result.job_id QHMr0SRKQ7AsssosTRgX-Q _model_server_result.datetime_utc '2025-04-26 07:42:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9b81 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 9B81 # _exptl.entry_id 9B81 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 480.482 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-methyl-2-(6-{4-[(2S)-1,1,1-trifluoro-2-hydroxypropan-2-yl]benzoyl}-6,11-dihydro-5H-pyrido[2,3-b][1,5]benzodiazepin-8-yl)propanenitrile _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9B81 _cell.length_a 82.79 _cell.length_b 82.79 _cell.length_c 302.16 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9B81 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # _chem_comp.formula 'C26 H23 F3 N4 O2' _chem_comp.formula_weight 480.482 _chem_comp.id A1AI4 _chem_comp.mon_nstd_flag . _chem_comp.name 2-methyl-2-(6-{4-[(2S)-1,1,1-trifluoro-2-hydroxypropan-2-yl]benzoyl}-6,11-dihydro-5H-pyrido[2,3-b][1,5]benzodiazepin-8-yl)propanenitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C3 C2 A1AI4 doub 1 n y C3 C4 A1AI4 sing 2 n y C2 C1 A1AI4 sing 3 n y C34 C31 A1AI4 sing 4 n n N11 C4 A1AI4 sing 5 n n N11 C10 A1AI4 sing 6 n n N12 C10 A1AI4 doub 7 n y N12 C13 A1AI4 sing 8 n y N33 C32 A1AI4 trip 9 n n C4 C5 A1AI4 doub 10 n y C10 C9 A1AI4 sing 11 n y C13 C14 A1AI4 doub 12 n y C32 C31 A1AI4 sing 13 n n C9 C8 A1AI4 sing 14 n n C9 C15 A1AI4 doub 15 n y C14 C15 A1AI4 sing 16 n y C1 C31 A1AI4 sing 17 n n C1 C6 A1AI4 doub 18 n y C8 N7 A1AI4 sing 19 n n C31 C35 A1AI4 sing 20 n n C5 C6 A1AI4 sing 21 n y C5 N7 A1AI4 sing 22 n n N7 C16 A1AI4 sing 23 n n C16 O30 A1AI4 doub 24 n n C16 C17 A1AI4 sing 25 n n C17 C18 A1AI4 doub 26 n y C17 C22 A1AI4 sing 27 n y C18 C19 A1AI4 sing 28 n y C22 C21 A1AI4 doub 29 n y C19 C20 A1AI4 doub 30 n y C21 C20 A1AI4 sing 31 n y C20 C23 A1AI4 sing 32 n n C24 C23 A1AI4 sing 33 n n C23 O25 A1AI4 sing 34 n n C23 C26 A1AI4 sing 35 n n F28 C26 A1AI4 sing 36 n n C26 F27 A1AI4 sing 37 n n C26 F29 A1AI4 sing 38 n n C14 H1 A1AI4 sing 39 n n C18 H2 A1AI4 sing 40 n n C22 H3 A1AI4 sing 41 n n C15 H4 A1AI4 sing 42 n n C19 H5 A1AI4 sing 43 n n C21 H6 A1AI4 sing 44 n n C2 H7 A1AI4 sing 45 n n C3 H8 A1AI4 sing 46 n n C6 H9 A1AI4 sing 47 n n C13 H10 A1AI4 sing 48 n n C8 H11 A1AI4 sing 49 n n C8 H12 A1AI4 sing 50 n n C34 H13 A1AI4 sing 51 n n C34 H14 A1AI4 sing 52 n n C34 H15 A1AI4 sing 53 n n C35 H16 A1AI4 sing 54 n n C35 H17 A1AI4 sing 55 n n C35 H18 A1AI4 sing 56 n n C24 H19 A1AI4 sing 57 n n C24 H20 A1AI4 sing 58 n n C24 H21 A1AI4 sing 59 n n N11 H22 A1AI4 sing 60 n n O25 H23 A1AI4 sing 61 n n # _atom_sites.entry_id 9B81 _atom_sites.fract_transf_matrix[1][1] 0.012079 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012079 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00331 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 A1AI4 A 1 501 500 A1AI4 UNL . D 3 NAP A 1 502 501 NAP NDP . E 4 GOL A 1 503 1 GOL GOL . F 2 A1AI4 B 1 500 500 A1AI4 UNL . G 3 NAP B 1 501 501 NAP NDP . H 5 HOH A 1 601 44 HOH HOH . H 5 HOH A 2 602 10 HOH HOH . H 5 HOH A 3 603 35 HOH HOH . H 5 HOH A 4 604 24 HOH HOH . H 5 HOH A 5 605 17 HOH HOH . H 5 HOH A 6 606 22 HOH HOH . H 5 HOH A 7 607 30 HOH HOH . H 5 HOH A 8 608 13 HOH HOH . H 5 HOH A 9 609 19 HOH HOH . H 5 HOH A 10 610 33 HOH HOH . H 5 HOH A 11 611 31 HOH HOH . H 5 HOH A 12 612 21 HOH HOH . H 5 HOH A 13 613 34 HOH HOH . H 5 HOH A 14 614 36 HOH HOH . H 5 HOH A 15 615 25 HOH HOH . H 5 HOH A 16 616 2 HOH HOH . H 5 HOH A 17 617 5 HOH HOH . H 5 HOH A 18 618 14 HOH HOH . H 5 HOH A 19 619 6 HOH HOH . H 5 HOH A 20 620 1 HOH HOH . H 5 HOH A 21 621 29 HOH HOH . H 5 HOH A 22 622 37 HOH HOH . H 5 HOH A 23 623 40 HOH HOH . H 5 HOH A 24 624 9 HOH HOH . H 5 HOH A 25 625 15 HOH HOH . H 5 HOH A 26 626 28 HOH HOH . I 5 HOH B 1 601 46 HOH HOH . I 5 HOH B 2 602 45 HOH HOH . I 5 HOH B 3 603 43 HOH HOH . I 5 HOH B 4 604 38 HOH HOH . I 5 HOH B 5 605 47 HOH HOH . I 5 HOH B 6 606 32 HOH HOH . I 5 HOH B 7 607 7 HOH HOH . I 5 HOH B 8 608 23 HOH HOH . I 5 HOH B 9 609 41 HOH HOH . I 5 HOH B 10 610 20 HOH HOH . I 5 HOH B 11 611 3 HOH HOH . I 5 HOH B 12 612 26 HOH HOH . I 5 HOH B 13 613 4 HOH HOH . I 5 HOH B 14 614 16 HOH HOH . I 5 HOH B 15 615 18 HOH HOH . I 5 HOH B 16 616 11 HOH HOH . I 5 HOH B 17 617 39 HOH HOH . I 5 HOH B 18 618 42 HOH HOH . I 5 HOH B 19 619 8 HOH HOH . I 5 HOH B 20 620 12 HOH HOH . I 5 HOH B 21 621 27 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C32 A1AI4 . . . C 2 31.295 -3.219 -6.273 1 62 ? C32 A1AI4 501 A 1 HETATM 2 C C14 A1AI4 . . . C 2 21.558 0.034 -6.161 1 55.51 ? C14 A1AI4 501 A 1 HETATM 3 C C18 A1AI4 . . . C 2 26.504 -1.363 -2.728 1 75.2 ? C18 A1AI4 501 A 1 HETATM 4 C C22 A1AI4 . . . C 2 26.491 -3.701 -2.141 1 75.42 ? C22 A1AI4 501 A 1 HETATM 5 C C15 A1AI4 . . . C 2 22.168 -1.197 -6.062 1 56.7 ? C15 A1AI4 501 A 1 HETATM 6 C C19 A1AI4 . . . C 2 27.512 -1.151 -1.817 1 77.5 ? C19 A1AI4 501 A 1 HETATM 7 C C21 A1AI4 . . . C 2 27.499 -3.464 -1.231 1 77.49 ? C21 A1AI4 501 A 1 HETATM 8 C C2 A1AI4 . . . C 2 28.978 -1.684 -6.829 1 59.05 ? C2 A1AI4 501 A 1 HETATM 9 C C3 A1AI4 . . . C 2 27.913 -0.825 -7 1 57.41 ? C3 A1AI4 501 A 1 HETATM 10 C C6 A1AI4 . . . C 2 27.555 -3.145 -5.618 1 60.18 ? C6 A1AI4 501 A 1 HETATM 11 C C13 A1AI4 . . . C 2 22.358 1.118 -6.441 1 53.28 ? C13 A1AI4 501 A 1 HETATM 12 C C17 A1AI4 . . . C 2 26.01 -2.642 -2.881 1 73.37 ? C17 A1AI4 501 A 1 HETATM 13 C C9 A1AI4 . . . C 2 23.539 -1.295 -6.215 1 57.16 ? C9 A1AI4 501 A 1 HETATM 14 C C20 A1AI4 . . . C 2 28.024 -2.194 -1.062 1 79.47 ? C20 A1AI4 501 A 1 HETATM 15 C C1 A1AI4 . . . C 2 28.818 -2.864 -6.128 1 60.88 ? C1 A1AI4 501 A 1 HETATM 16 C C4 A1AI4 . . . C 2 26.659 -1.105 -6.494 1 56.63 ? C4 A1AI4 501 A 1 HETATM 17 C C5 A1AI4 . . . C 2 26.485 -2.28 -5.771 1 59.76 ? C5 A1AI4 501 A 1 HETATM 18 C C10 A1AI4 . . . C 2 24.277 -0.146 -6.486 1 54.98 ? C10 A1AI4 501 A 1 HETATM 19 C C16 A1AI4 . . . C 2 24.943 -2.898 -3.856 1 68.52 ? C16 A1AI4 501 A 1 HETATM 20 C C8 A1AI4 . . . C 2 24.13 -2.653 -6.113 1 57.65 ? C8 A1AI4 501 A 1 HETATM 21 C C34 A1AI4 . . . C 2 29.825 -5.083 -6.71 1 58.92 ? C34 A1AI4 501 A 1 HETATM 22 C C35 A1AI4 . . . C 2 30.079 -4.17 -4.463 1 59.71 ? C35 A1AI4 501 A 1 HETATM 23 C C24 A1AI4 . . . C 2 30.141 -0.944 -0.543 1 81.55 ? C24 A1AI4 501 A 1 HETATM 24 C C31 A1AI4 . . . C 2 29.992 -3.802 -5.929 1 60.64 ? C31 A1AI4 501 A 1 HETATM 25 C C23 A1AI4 . . . C 2 29.123 -1.951 -0.062 1 83.08 ? C23 A1AI4 501 A 1 HETATM 26 C C26 A1AI4 . . . C 2 28.504 -1.553 1.265 1 87.68 ? C26 A1AI4 501 A 1 HETATM 27 N N33 A1AI4 . . . C 2 32.337 -2.779 -6.535 1 61.92 ? N33 A1AI4 501 A 1 HETATM 28 N N12 A1AI4 . . . C 2 23.681 1.051 -6.618 1 54.27 ? N12 A1AI4 501 A 1 HETATM 29 N N11 A1AI4 . . . C 2 25.672 -0.117 -6.671 1 53.33 ? N11 A1AI4 501 A 1 HETATM 30 N N7 A1AI4 . . . C 2 25.228 -2.627 -5.199 1 62.85 ? N7 A1AI4 501 A 1 HETATM 31 O O30 A1AI4 . . . C 2 23.874 -3.327 -3.429 1 67.96 ? O30 A1AI4 501 A 1 HETATM 32 O O25 A1AI4 . . . C 2 29.89 -3.128 0.136 1 84.18 ? O25 A1AI4 501 A 1 HETATM 33 F F27 A1AI4 . . . C 2 27.744 -2.579 1.742 1 87.38 ? F27 A1AI4 501 A 1 HETATM 34 F F28 A1AI4 . . . C 2 27.709 -0.441 1.158 1 88.75 ? F28 A1AI4 501 A 1 HETATM 35 F F29 A1AI4 . . . C 2 29.464 -1.303 2.197 1 90.51 ? F29 A1AI4 501 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 35 #