data_9B81
#
_model_server_result.job_id            D7WVSkKNdHb1LV_WCrZ7Pg 
_model_server_result.datetime_utc      '2025-06-30 17:17:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9b81 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":502}' 
#
_entry.id    9B81 
#
_exptl.entry_id    9B81 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9B81 
_cell.length_a            82.79 
_cell.length_b            82.79 
_cell.length_c            302.16 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9B81 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 G N N 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 311 n n 
PA O2A NAP sing 312 n n 
PA O5B NAP sing 313 n n 
PA O3 NAP sing 314 n n 
O2A HOA2 NAP sing 315 n n 
O5B C5B NAP sing 316 n n 
C5B C4B NAP sing 317 n n 
C5B H51A NAP sing 318 n n 
C5B H52A NAP sing 319 n n 
C4B O4B NAP sing 320 n n 
C4B C3B NAP sing 321 n n 
C4B H4B NAP sing 322 n n 
O4B C1B NAP sing 323 n n 
C3B O3B NAP sing 324 n n 
C3B C2B NAP sing 325 n n 
C3B H3B NAP sing 326 n n 
O3B HO3A NAP sing 327 n n 
C2B O2B NAP sing 328 n n 
C2B C1B NAP sing 329 n n 
C2B H2B NAP sing 330 n n 
O2B P2B NAP sing 331 n n 
C1B N9A NAP sing 332 n n 
C1B H1B NAP sing 333 n n 
N9A C8A NAP sing 334 n y 
N9A C4A NAP sing 335 n y 
C8A N7A NAP doub 336 n y 
C8A H8A NAP sing 337 n n 
N7A C5A NAP sing 338 n y 
C5A C6A NAP sing 339 n y 
C5A C4A NAP doub 340 n y 
C6A N6A NAP sing 341 n n 
C6A N1A NAP doub 342 n y 
N6A H61A NAP sing 343 n n 
N6A H62A NAP sing 344 n n 
N1A C2A NAP sing 345 n y 
C2A N3A NAP doub 346 n y 
C2A H2A NAP sing 347 n n 
N3A C4A NAP sing 348 n y 
O3 PN NAP sing 349 n n 
PN O1N NAP doub 350 n n 
PN O2N NAP sing 351 n n 
PN O5D NAP sing 352 n n 
O5D C5D NAP sing 353 n n 
C5D C4D NAP sing 354 n n 
C5D H51N NAP sing 355 n n 
C5D H52N NAP sing 356 n n 
C4D O4D NAP sing 357 n n 
C4D C3D NAP sing 358 n n 
C4D H4D NAP sing 359 n n 
O4D C1D NAP sing 360 n n 
C3D O3D NAP sing 361 n n 
C3D C2D NAP sing 362 n n 
C3D H3D NAP sing 363 n n 
O3D HO3N NAP sing 364 n n 
C2D O2D NAP sing 365 n n 
C2D C1D NAP sing 366 n n 
C2D H2D NAP sing 367 n n 
O2D HO2N NAP sing 368 n n 
C1D N1N NAP sing 369 n n 
C1D H1D NAP sing 370 n n 
N1N C2N NAP sing 371 n y 
N1N C6N NAP doub 372 n y 
C2N C3N NAP doub 373 n y 
C2N H2N NAP sing 374 n n 
C3N C7N NAP sing 375 n n 
C3N C4N NAP sing 376 n y 
C7N O7N NAP doub 377 n n 
C7N N7N NAP sing 378 n n 
N7N H71N NAP sing 379 n n 
N7N H72N NAP sing 380 n n 
C4N C5N NAP doub 381 n y 
C4N H4N NAP sing 382 n n 
C5N C6N NAP sing 383 n y 
C5N H5N NAP sing 384 n n 
C6N H6N NAP sing 385 n n 
P2B O1X NAP doub 386 n n 
P2B O2X NAP sing 387 n n 
P2B O3X NAP sing 388 n n 
O2X HOP2 NAP sing 389 n n 
O3X HOP3 NAP sing 390 n n 
#
_atom_sites.entry_id                     9B81 
_atom_sites.fract_transf_matrix[1][1]    0.012079 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012079 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00331 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 A1AI4 A 1 501 500 A1AI4 UNL . 
D 3 NAP A 1 502 501 NAP NDP . 
E 4 GOL A 1 503 1 GOL GOL . 
F 2 A1AI4 B 1 500 500 A1AI4 UNL . 
G 3 NAP B 1 501 501 NAP NDP . 
H 5 HOH A 1 601 44 HOH HOH . 
H 5 HOH A 2 602 10 HOH HOH . 
H 5 HOH A 3 603 35 HOH HOH . 
H 5 HOH A 4 604 24 HOH HOH . 
H 5 HOH A 5 605 17 HOH HOH . 
H 5 HOH A 6 606 22 HOH HOH . 
H 5 HOH A 7 607 30 HOH HOH . 
H 5 HOH A 8 608 13 HOH HOH . 
H 5 HOH A 9 609 19 HOH HOH . 
H 5 HOH A 10 610 33 HOH HOH . 
H 5 HOH A 11 611 31 HOH HOH . 
H 5 HOH A 12 612 21 HOH HOH . 
H 5 HOH A 13 613 34 HOH HOH . 
H 5 HOH A 14 614 36 HOH HOH . 
H 5 HOH A 15 615 25 HOH HOH . 
H 5 HOH A 16 616 2 HOH HOH . 
H 5 HOH A 17 617 5 HOH HOH . 
H 5 HOH A 18 618 14 HOH HOH . 
H 5 HOH A 19 619 6 HOH HOH . 
H 5 HOH A 20 620 1 HOH HOH . 
H 5 HOH A 21 621 29 HOH HOH . 
H 5 HOH A 22 622 37 HOH HOH . 
H 5 HOH A 23 623 40 HOH HOH . 
H 5 HOH A 24 624 9 HOH HOH . 
H 5 HOH A 25 625 15 HOH HOH . 
H 5 HOH A 26 626 28 HOH HOH . 
I 5 HOH B 1 601 46 HOH HOH . 
I 5 HOH B 2 602 45 HOH HOH . 
I 5 HOH B 3 603 43 HOH HOH . 
I 5 HOH B 4 604 38 HOH HOH . 
I 5 HOH B 5 605 47 HOH HOH . 
I 5 HOH B 6 606 32 HOH HOH . 
I 5 HOH B 7 607 7 HOH HOH . 
I 5 HOH B 8 608 23 HOH HOH . 
I 5 HOH B 9 609 41 HOH HOH . 
I 5 HOH B 10 610 20 HOH HOH . 
I 5 HOH B 11 611 3 HOH HOH . 
I 5 HOH B 12 612 26 HOH HOH . 
I 5 HOH B 13 613 4 HOH HOH . 
I 5 HOH B 14 614 16 HOH HOH . 
I 5 HOH B 15 615 18 HOH HOH . 
I 5 HOH B 16 616 11 HOH HOH . 
I 5 HOH B 17 617 39 HOH HOH . 
I 5 HOH B 18 618 42 HOH HOH . 
I 5 HOH B 19 619 8 HOH HOH . 
I 5 HOH B 20 620 12 HOH HOH . 
I 5 HOH B 21 621 27 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . D 3 28.66 -15.998 -14.206 1 87.81 ? PA NAP 502 A 1 
HETATM 2 O O1A NAP . . . D 3 28.78 -14.583 -13.688 1 88.22 ? O1A NAP 502 A 1 
HETATM 3 O O2A NAP . . . D 3 28.48 -16.288 -15.64 1 88.09 ? O2A NAP 502 A 1 
HETATM 4 O O5B NAP . . . D 3 27.368 -16.69 -13.505 1 88.33 ? O5B NAP 502 A 1 
HETATM 5 C C5B NAP . . . D 3 27.349 -17.698 -12.466 1 88.73 ? C5B NAP 502 A 1 
HETATM 6 C C4B NAP . . . D 3 25.886 -18.048 -12.186 1 88.28 ? C4B NAP 502 A 1 
HETATM 7 O O4B NAP . . . D 3 25.155 -16.819 -11.785 1 88.65 ? O4B NAP 502 A 1 
HETATM 8 C C3B NAP . . . D 3 25.199 -18.509 -13.469 1 89.17 ? C3B NAP 502 A 1 
HETATM 9 O O3B NAP . . . D 3 25.403 -19.914 -13.692 1 89.84 ? O3B NAP 502 A 1 
HETATM 10 C C2B NAP . . . D 3 23.736 -18.154 -13.165 1 88.78 ? C2B NAP 502 A 1 
HETATM 11 O O2B NAP . . . D 3 23.2 -19.115 -12.228 1 90.57 ? O2B NAP 502 A 1 
HETATM 12 C C1B NAP . . . D 3 23.916 -16.712 -12.597 1 88.59 ? C1B NAP 502 A 1 
HETATM 13 N N9A NAP . . . D 3 23.981 -15.591 -13.607 1 87.93 ? N9A NAP 502 A 1 
HETATM 14 C C8A NAP . . . D 3 25.1 -14.808 -13.919 1 88.66 ? C8A NAP 502 A 1 
HETATM 15 N N7A NAP . . . D 3 24.894 -13.903 -14.856 1 89.08 ? N7A NAP 502 A 1 
HETATM 16 C C5A NAP . . . D 3 23.564 -14.067 -15.189 1 88.62 ? C5A NAP 502 A 1 
HETATM 17 C C6A NAP . . . D 3 22.735 -13.404 -16.128 1 89.58 ? C6A NAP 502 A 1 
HETATM 18 N N6A NAP . . . D 3 23.219 -12.389 -16.924 1 90.88 ? N6A NAP 502 A 1 
HETATM 19 N N1A NAP . . . D 3 21.412 -13.798 -16.249 1 89.44 ? N1A NAP 502 A 1 
HETATM 20 C C2A NAP . . . D 3 20.929 -14.799 -15.469 1 89.1 ? C2A NAP 502 A 1 
HETATM 21 N N3A NAP . . . D 3 21.647 -15.503 -14.542 1 88.17 ? N3A NAP 502 A 1 
HETATM 22 C C4A NAP . . . D 3 22.96 -15.102 -14.436 1 88.05 ? C4A NAP 502 A 1 
HETATM 23 O O3 NAP . . . D 3 29.847 -16.921 -13.66 1 88.25 ? O3 NAP 502 A 1 
HETATM 24 P PN NAP . . . D 3 30.384 -18.417 -13.97 1 88.2 ? PN NAP 502 A 1 
HETATM 25 O O1N NAP . . . D 3 31.323 -18.658 -12.79 1 88.5 ? O1N NAP 502 A 1 
HETATM 26 O O2N NAP . . . D 3 29.321 -19.416 -14.446 1 88.22 ? O2N NAP 502 A 1 
HETATM 27 O O5D NAP . . . D 3 31.217 -18.117 -15.336 1 88.27 ? O5D NAP 502 A 1 
HETATM 28 C C5D NAP . . . D 3 31.863 -19.179 -16.032 1 88.2 ? C5D NAP 502 A 1 
HETATM 29 C C4D NAP . . . D 3 32.97 -18.613 -16.938 1 87.8 ? C4D NAP 502 A 1 
HETATM 30 O O4D NAP . . . D 3 32.865 -17.161 -17.038 1 87.87 ? O4D NAP 502 A 1 
HETATM 31 C C3D NAP . . . D 3 34.386 -19.002 -16.459 1 88.46 ? C3D NAP 502 A 1 
HETATM 32 O O3D NAP . . . D 3 35.13 -19.947 -17.25 1 89.18 ? O3D NAP 502 A 1 
HETATM 33 C C2D NAP . . . D 3 35.054 -17.677 -16.07 1 88.74 ? C2D NAP 502 A 1 
HETATM 34 O O2D NAP . . . D 3 36.432 -17.649 -16.494 1 89.4 ? O2D NAP 502 A 1 
HETATM 35 C C1D NAP . . . D 3 34.173 -16.61 -16.77 1 88.4 ? C1D NAP 502 A 1 
HETATM 36 N N1N NAP . . . D 3 34.085 -15.286 -16.103 1 87.18 ? N1N NAP 502 A 1 
HETATM 37 C C2N NAP . . . D 3 34.36 -14.152 -16.916 1 87.32 ? C2N NAP 502 A 1 
HETATM 38 C C3N NAP . . . D 3 34.306 -12.867 -16.479 1 86.78 ? C3N NAP 502 A 1 
HETATM 39 C C7N NAP . . . D 3 34.603 -11.74 -17.459 1 87.58 ? C7N NAP 502 A 1 
HETATM 40 O O7N NAP . . . D 3 34.906 -11.891 -18.652 1 87.77 ? O7N NAP 502 A 1 
HETATM 41 N N7N NAP . . . D 3 34.52 -10.468 -16.971 1 87.74 ? N7N NAP 502 A 1 
HETATM 42 C C4N NAP . . . D 3 33.941 -12.633 -14.99 1 87.23 ? C4N NAP 502 A 1 
HETATM 43 C C5N NAP . . . D 3 33.666 -13.886 -14.136 1 87.35 ? C5N NAP 502 A 1 
HETATM 44 C C6N NAP . . . D 3 33.747 -15.108 -14.716 1 86.87 ? C6N NAP 502 A 1 
HETATM 45 P P2B NAP . . . D 3 21.739 -19.792 -12.398 1 91.45 ? P2B NAP 502 A 1 
HETATM 46 O O1X NAP . . . D 3 20.879 -18.726 -13.091 1 91.85 ? O1X NAP 502 A 1 
HETATM 47 O O2X NAP . . . D 3 21.874 -21.137 -13.126 1 92.12 ? O2X NAP 502 A 1 
HETATM 48 O O3X NAP . . . D 3 21.465 -19.917 -10.916 1 91.37 ? O3X NAP 502 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           316 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           48 
#