data_9B9N # _model_server_result.job_id -TU4lZiAs0TroKfgbxpc4A _model_server_result.datetime_utc '2024-10-12 19:27:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9b9n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 9B9N # _exptl.entry_id 9B9N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 207.204 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2-{[(2Z)-2-(hydroxyimino)ethyl]sulfanyl}butanedioic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.88 _cell.angle_gamma 90 _cell.entry_id 9B9N _cell.length_a 124.953 _cell.length_b 55.865 _cell.length_c 96.462 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9B9N _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 204 A GLU 181 1_555 D FE FE . A FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? metalc ? metalc2 A ND1 HIS 214 A HIS 191 1_555 D FE FE . A FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc3 A NE2 HIS 297 A HIS 274 1_555 D FE FE . A FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc4 C O2 A1AL2 . A A1AL2 401 1_555 D FE FE . A FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.773 ? metalc ? metalc5 D FE FE . A FE 402 1_555 G O HOH . A HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc6 D FE FE . A FE 402 1_555 G O HOH . A HOH 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? metalc ? metalc7 B OE1 GLU 204 B GLU 181 1_555 F FE FE . B FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.987 ? metalc ? metalc8 B ND1 HIS 214 B HIS 191 1_555 F FE FE . B FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc9 B NE2 HIS 297 B HIS 274 1_555 F FE FE . B FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? metalc ? metalc10 E N1 A1AL2 . B A1AL2 401 1_555 F FE FE . B FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.947 ? metalc ? metalc11 E O2 A1AL2 . B A1AL2 401 1_555 F FE FE . B FE 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc12 F FE FE . B FE 402 1_555 H O HOH . B HOH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? # _chem_comp.formula 'C6 H9 N O5 S' _chem_comp.formula_weight 207.204 _chem_comp.id A1AL2 _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2-{[(2Z)-2-(hydroxyimino)ethyl]sulfanyl}butanedioic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 N1 A1AL2 sing 1 n n O10 C4 A1AL2 doub 2 n n O11 C4 A1AL2 sing 3 n n C4 C3 A1AL2 sing 4 n n C3 C1 A1AL2 sing 5 n n N1 C7 A1AL2 doub 6 z n C6 C7 A1AL2 sing 7 n n C6 S5 A1AL2 sing 8 n n C1 S5 A1AL2 sing 9 n n C1 C2 A1AL2 sing 10 n n C2 O9 A1AL2 doub 11 n n C2 O8 A1AL2 sing 12 n n C1 H1 A1AL2 sing 13 n n C3 H2 A1AL2 sing 14 n n C3 H3 A1AL2 sing 15 n n C6 H4 A1AL2 sing 16 n n C6 H5 A1AL2 sing 17 n n C7 H6 A1AL2 sing 18 n n O2 H7 A1AL2 sing 19 n n O11 H8 A1AL2 sing 20 n n O8 H9 A1AL2 sing 21 n n # _atom_sites.entry_id 9B9N _atom_sites.fract_transf_matrix[1][1] 0.008003 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000966 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0179 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010442 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 A1AL2 A 1 401 401 A1AL2 SUB . D 3 FE A 1 402 2 FE FE . E 2 A1AL2 B 1 401 401 A1AL2 SUB . F 3 FE B 1 402 1 FE FE . G 4 HOH A 1 501 2 HOH HOH . G 4 HOH A 2 502 68 HOH HOH . G 4 HOH A 3 503 38 HOH HOH . G 4 HOH A 4 504 92 HOH HOH . G 4 HOH A 5 505 114 HOH HOH . G 4 HOH A 6 506 124 HOH HOH . G 4 HOH A 7 507 75 HOH HOH . G 4 HOH A 8 508 20 HOH HOH . G 4 HOH A 9 509 41 HOH HOH . G 4 HOH A 10 510 72 HOH HOH . G 4 HOH A 11 511 133 HOH HOH . G 4 HOH A 12 512 116 HOH HOH . G 4 HOH A 13 513 134 HOH HOH . G 4 HOH A 14 514 106 HOH HOH . G 4 HOH A 15 515 29 HOH HOH . G 4 HOH A 16 516 14 HOH HOH . G 4 HOH A 17 517 13 HOH HOH . G 4 HOH A 18 518 60 HOH HOH . G 4 HOH A 19 519 1 HOH HOH . G 4 HOH A 20 520 101 HOH HOH . G 4 HOH A 21 521 111 HOH HOH . G 4 HOH A 22 522 28 HOH HOH . G 4 HOH A 23 523 115 HOH HOH . G 4 HOH A 24 524 93 HOH HOH . G 4 HOH A 25 525 82 HOH HOH . G 4 HOH A 26 526 51 HOH HOH . G 4 HOH A 27 527 74 HOH HOH . G 4 HOH A 28 528 46 HOH HOH . G 4 HOH A 29 529 52 HOH HOH . G 4 HOH A 30 530 5 HOH HOH . G 4 HOH A 31 531 99 HOH HOH . G 4 HOH A 32 532 37 HOH HOH . G 4 HOH A 33 533 33 HOH HOH . G 4 HOH A 34 534 27 HOH HOH . G 4 HOH A 35 535 10 HOH HOH . G 4 HOH A 36 536 22 HOH HOH . G 4 HOH A 37 537 71 HOH HOH . G 4 HOH A 38 538 9 HOH HOH . G 4 HOH A 39 539 30 HOH HOH . G 4 HOH A 40 540 136 HOH HOH . G 4 HOH A 41 541 86 HOH HOH . G 4 HOH A 42 542 23 HOH HOH . G 4 HOH A 43 543 121 HOH HOH . G 4 HOH A 44 544 87 HOH HOH . G 4 HOH A 45 545 40 HOH HOH . G 4 HOH A 46 546 54 HOH HOH . G 4 HOH A 47 547 67 HOH HOH . G 4 HOH A 48 548 58 HOH HOH . G 4 HOH A 49 549 80 HOH HOH . G 4 HOH A 50 550 122 HOH HOH . G 4 HOH A 51 551 97 HOH HOH . G 4 HOH A 52 552 127 HOH HOH . G 4 HOH A 53 553 45 HOH HOH . G 4 HOH A 54 554 125 HOH HOH . G 4 HOH A 55 555 102 HOH HOH . G 4 HOH A 56 556 126 HOH HOH . H 4 HOH B 1 501 47 HOH HOH . H 4 HOH B 2 502 112 HOH HOH . H 4 HOH B 3 503 100 HOH HOH . H 4 HOH B 4 504 110 HOH HOH . H 4 HOH B 5 505 69 HOH HOH . H 4 HOH B 6 506 17 HOH HOH . H 4 HOH B 7 507 113 HOH HOH . H 4 HOH B 8 508 42 HOH HOH . H 4 HOH B 9 509 7 HOH HOH . H 4 HOH B 10 510 104 HOH HOH . H 4 HOH B 11 511 95 HOH HOH . H 4 HOH B 12 512 76 HOH HOH . H 4 HOH B 13 513 131 HOH HOH . H 4 HOH B 14 514 89 HOH HOH . H 4 HOH B 15 515 16 HOH HOH . H 4 HOH B 16 516 120 HOH HOH . H 4 HOH B 17 517 53 HOH HOH . H 4 HOH B 18 518 36 HOH HOH . H 4 HOH B 19 519 26 HOH HOH . H 4 HOH B 20 520 98 HOH HOH . H 4 HOH B 21 521 24 HOH HOH . H 4 HOH B 22 522 18 HOH HOH . H 4 HOH B 23 523 128 HOH HOH . H 4 HOH B 24 524 84 HOH HOH . H 4 HOH B 25 525 25 HOH HOH . H 4 HOH B 26 526 50 HOH HOH . H 4 HOH B 27 527 12 HOH HOH . H 4 HOH B 28 528 19 HOH HOH . H 4 HOH B 29 529 73 HOH HOH . H 4 HOH B 30 530 105 HOH HOH . H 4 HOH B 31 531 11 HOH HOH . H 4 HOH B 32 532 4 HOH HOH . H 4 HOH B 33 533 44 HOH HOH . H 4 HOH B 34 534 6 HOH HOH . H 4 HOH B 35 535 83 HOH HOH . H 4 HOH B 36 536 43 HOH HOH . H 4 HOH B 37 537 34 HOH HOH . H 4 HOH B 38 538 32 HOH HOH . H 4 HOH B 39 539 15 HOH HOH . H 4 HOH B 40 540 8 HOH HOH . H 4 HOH B 41 541 81 HOH HOH . H 4 HOH B 42 542 119 HOH HOH . H 4 HOH B 43 543 56 HOH HOH . H 4 HOH B 44 544 3 HOH HOH . H 4 HOH B 45 545 132 HOH HOH . H 4 HOH B 46 546 79 HOH HOH . H 4 HOH B 47 547 49 HOH HOH . H 4 HOH B 48 548 57 HOH HOH . H 4 HOH B 49 549 96 HOH HOH . H 4 HOH B 50 550 129 HOH HOH . H 4 HOH B 51 551 39 HOH HOH . H 4 HOH B 52 552 91 HOH HOH . H 4 HOH B 53 553 90 HOH HOH . H 4 HOH B 54 554 94 HOH HOH . H 4 HOH B 55 555 85 HOH HOH . H 4 HOH B 56 556 70 HOH HOH . H 4 HOH B 57 557 55 HOH HOH . H 4 HOH B 58 558 21 HOH HOH . H 4 HOH B 59 559 35 HOH HOH . H 4 HOH B 60 560 66 HOH HOH . H 4 HOH B 61 561 135 HOH HOH . H 4 HOH B 62 562 78 HOH HOH . H 4 HOH B 63 563 62 HOH HOH . H 4 HOH B 64 564 48 HOH HOH . H 4 HOH B 65 565 107 HOH HOH . H 4 HOH B 66 566 123 HOH HOH . H 4 HOH B 67 567 109 HOH HOH . H 4 HOH B 68 568 108 HOH HOH . H 4 HOH B 69 569 117 HOH HOH . H 4 HOH B 70 570 31 HOH HOH . H 4 HOH B 71 571 103 HOH HOH . H 4 HOH B 72 572 118 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 A1AL2 . . . C 2 26.305 8.413 32.325 1 89.69 ? C1 A1AL2 401 A 1 HETATM 2 N N1 A1AL2 . . . C 2 28.927 12.328 31.735 1 86.41 ? N1 A1AL2 401 A 1 HETATM 3 C C2 A1AL2 . . . C 2 25.231 8.55 33.364 1 88.16 ? C2 A1AL2 401 A 1 HETATM 4 C C3 A1AL2 . . . C 2 25.733 7.828 31.021 1 89.62 ? C3 A1AL2 401 A 1 HETATM 5 C C4 A1AL2 . . . C 2 26.291 6.455 30.661 1 89.7 ? C4 A1AL2 401 A 1 HETATM 6 C C6 A1AL2 . . . C 2 27.942 10.72 33.313 1 89.15 ? C6 A1AL2 401 A 1 HETATM 7 C C7 A1AL2 . . . C 2 29.067 11.521 32.695 1 87.71 ? C7 A1AL2 401 A 1 HETATM 8 O O2 A1AL2 . . . C 2 30.031 13.029 31.22 1 84.55 ? O2 A1AL2 401 A 1 HETATM 9 O O10 A1AL2 . . . C 2 27.003 6.292 29.646 1 89.35 ? O10 A1AL2 401 A 1 HETATM 10 O O11 A1AL2 . . . C 2 26.022 5.488 31.393 1 90.08 ? O11 A1AL2 401 A 1 HETATM 11 O O8 A1AL2 . . . C 2 24.771 7.51 33.894 1 86.5 ? O8 A1AL2 401 A 1 HETATM 12 O O9 A1AL2 . . . C 2 24.859 9.724 33.632 1 88.25 ? O9 A1AL2 401 A 1 HETATM 13 S S5 A1AL2 . . . C 2 26.931 10.052 32.044 1 90.81 ? S5 A1AL2 401 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 13 #