data_9BAV # _model_server_result.job_id ZUPJtgELW82E0LHxFnNZMg _model_server_result.datetime_utc '2025-08-29 01:23:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9bav # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":601}' # _entry.id 9BAV # _exptl.entry_id 9BAV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 260.219 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-O-sulfo-alpha-D-galactopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9BAV _cell.length_a 66.229 _cell.length_b 92.87 _cell.length_c 176.478 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9BAV _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 A1APB A1APD C1 O1 . O4 HO4 . sing 2 ? 2 3 2 A1APC A1APB C1 O1 . O3 HO3 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C A1APD 1 C 1 A1APD B 601 LN4 2 n C A1APB 2 C 2 A1APB B 601 LN4 2 n C A1APC 3 C 3 A1APC B 601 LN4 # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C O4 A1APD . C A1APD 1 1_555 C C1 A1APB . C A1APB 2 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.412 ? covale ? covale2 C O3 A1APB . C A1APB 2 1_555 C C1 A1APC . C A1APC 3 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.416 ? metalc ? metalc1 A OD1 ASP 41 A ASP 44 1_555 E CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc2 A OD1 ASP 42 A ASP 45 1_555 E CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? metalc ? metalc3 A OD1 ASP 330 A ASP 333 1_555 E CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.945 ? metalc ? metalc4 A OD2 ASP 330 A ASP 333 1_555 E CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc5 A OD1 ASN 331 A ASN 334 1_555 E CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.761 ? metalc ? metalc6 D O8 G6S . A G6S 601 1_555 E CA CA . A CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.497 ? metalc ? metalc7 B OD1 ASP 41 B ASP 44 1_555 J CA CA . B CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc8 B OD1 ASP 42 B ASP 45 1_555 J CA CA . B CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? metalc ? metalc9 B OD1 ASP 330 B ASP 333 1_555 J CA CA . B CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.776 ? metalc ? metalc10 B OD2 ASP 330 B ASP 333 1_555 J CA CA . B CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? metalc ? metalc11 B OD1 ASN 331 B ASN 334 1_555 J CA CA . B CA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.61 ? metalc ? metalc12 J CA CA . B CA 602 1_555 C O1S A1APC . C A1APC 3 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.683 ? # _chem_comp.formula 'C6 H12 O9 S' _chem_comp.formula_weight 260.219 _chem_comp.id A1APC _chem_comp.mon_nstd_flag n _chem_comp.name 6-O-sulfo-alpha-D-galactopyranose _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O3 C3 A1APC sing 29 n n O2 C2 A1APC sing 30 n n C3 C2 A1APC sing 31 n n C3 C4 A1APC sing 32 n n C2 C1 A1APC sing 33 n n C4 C5 A1APC sing 34 n n C4 O4 A1APC sing 35 n n C1 O5 A1APC sing 36 n n C5 O5 A1APC sing 37 n n C5 C6 A1APC sing 38 n n O1S S1 A1APC doub 39 n n O6 C6 A1APC sing 40 n n O6 S1 A1APC sing 41 n n S1 O2S A1APC doub 42 n n S1 O3S A1APC sing 43 n n C1 O1 A1APC sing 44 n n C1 H1 A1APC sing 45 n n C2 H2 A1APC sing 46 n n C3 H3 A1APC sing 47 n n C4 H4 A1APC sing 48 n n C5 H5 A1APC sing 49 n n C6 H61 A1APC sing 50 n n C6 H62 A1APC sing 51 n n O2 HO2 A1APC sing 52 n n O3 HO3 A1APC sing 53 n n O4 HO4 A1APC sing 54 n n O1 HO1 A1APC sing 55 n n O3S H6 A1APC sing 56 n n # _atom_sites.entry_id 9BAV _atom_sites.fract_transf_matrix[1][1] 0.015099 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010768 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005666 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 G6S A 1 601 601 G6S G6S . E 4 CA A 1 602 3 CA CA . F 5 SO4 A 1 603 1 SO4 SO4 . G 6 CL A 1 604 2 CL CL . H 6 CL A 1 605 3 CL CL . I 7 A1APC B 1 601 602 A1APC LN4 . J 4 CA B 1 602 2 CA CA . K 8 EDO B 1 603 1 EDO EDO . L 8 EDO B 1 604 2 EDO EDO . M 6 CL B 1 605 1 CL CL . N 9 HOH A 1 701 89 HOH HOH . N 9 HOH A 2 702 11 HOH HOH . N 9 HOH A 3 703 8 HOH HOH . N 9 HOH A 4 704 100 HOH HOH . N 9 HOH A 5 705 9 HOH HOH . N 9 HOH A 6 706 60 HOH HOH . N 9 HOH A 7 707 40 HOH HOH . N 9 HOH A 8 708 26 HOH HOH . N 9 HOH A 9 709 58 HOH HOH . N 9 HOH A 10 710 23 HOH HOH . N 9 HOH A 11 711 52 HOH HOH . N 9 HOH A 12 712 31 HOH HOH . N 9 HOH A 13 713 102 HOH HOH . N 9 HOH A 14 714 64 HOH HOH . N 9 HOH A 15 715 85 HOH HOH . N 9 HOH A 16 716 13 HOH HOH . N 9 HOH A 17 717 17 HOH HOH . N 9 HOH A 18 718 36 HOH HOH . N 9 HOH A 19 719 12 HOH HOH . N 9 HOH A 20 720 18 HOH HOH . N 9 HOH A 21 721 62 HOH HOH . N 9 HOH A 22 722 71 HOH HOH . N 9 HOH A 23 723 38 HOH HOH . N 9 HOH A 24 724 98 HOH HOH . N 9 HOH A 25 725 41 HOH HOH . N 9 HOH A 26 726 93 HOH HOH . N 9 HOH A 27 727 76 HOH HOH . N 9 HOH A 28 728 95 HOH HOH . N 9 HOH A 29 729 96 HOH HOH . N 9 HOH A 30 730 24 HOH HOH . N 9 HOH A 31 731 42 HOH HOH . N 9 HOH A 32 732 1 HOH HOH . N 9 HOH A 33 733 19 HOH HOH . N 9 HOH A 34 734 34 HOH HOH . N 9 HOH A 35 735 84 HOH HOH . N 9 HOH A 36 736 68 HOH HOH . N 9 HOH A 37 737 91 HOH HOH . N 9 HOH A 38 738 72 HOH HOH . N 9 HOH A 39 739 7 HOH HOH . N 9 HOH A 40 740 55 HOH HOH . N 9 HOH A 41 741 35 HOH HOH . N 9 HOH A 42 742 90 HOH HOH . N 9 HOH A 43 743 99 HOH HOH . N 9 HOH A 44 744 81 HOH HOH . N 9 HOH A 45 745 92 HOH HOH . N 9 HOH A 46 746 75 HOH HOH . N 9 HOH A 47 747 22 HOH HOH . N 9 HOH A 48 748 6 HOH HOH . N 9 HOH A 49 749 16 HOH HOH . O 9 HOH B 1 701 47 HOH HOH . O 9 HOH B 2 702 48 HOH HOH . O 9 HOH B 3 703 78 HOH HOH . O 9 HOH B 4 704 82 HOH HOH . O 9 HOH B 5 705 33 HOH HOH . O 9 HOH B 6 706 20 HOH HOH . O 9 HOH B 7 707 70 HOH HOH . O 9 HOH B 8 708 44 HOH HOH . O 9 HOH B 9 709 66 HOH HOH . O 9 HOH B 10 710 21 HOH HOH . O 9 HOH B 11 711 94 HOH HOH . O 9 HOH B 12 712 101 HOH HOH . O 9 HOH B 13 713 15 HOH HOH . O 9 HOH B 14 714 73 HOH HOH . O 9 HOH B 15 715 29 HOH HOH . O 9 HOH B 16 716 86 HOH HOH . O 9 HOH B 17 717 30 HOH HOH . O 9 HOH B 18 718 32 HOH HOH . O 9 HOH B 19 719 37 HOH HOH . O 9 HOH B 20 720 87 HOH HOH . O 9 HOH B 21 721 59 HOH HOH . O 9 HOH B 22 722 39 HOH HOH . O 9 HOH B 23 723 4 HOH HOH . O 9 HOH B 24 724 46 HOH HOH . O 9 HOH B 25 725 2 HOH HOH . O 9 HOH B 26 726 50 HOH HOH . O 9 HOH B 27 727 45 HOH HOH . O 9 HOH B 28 728 27 HOH HOH . O 9 HOH B 29 729 65 HOH HOH . O 9 HOH B 30 730 69 HOH HOH . O 9 HOH B 31 731 10 HOH HOH . O 9 HOH B 32 732 49 HOH HOH . O 9 HOH B 33 733 14 HOH HOH . O 9 HOH B 34 734 97 HOH HOH . O 9 HOH B 35 735 28 HOH HOH . O 9 HOH B 36 736 77 HOH HOH . O 9 HOH B 37 737 57 HOH HOH . O 9 HOH B 38 738 79 HOH HOH . O 9 HOH B 39 739 53 HOH HOH . O 9 HOH B 40 740 88 HOH HOH . O 9 HOH B 41 741 67 HOH HOH . O 9 HOH B 42 742 63 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1S A1APC . B . I 7 -15.415 8.053 17.984 0.2 41.07 ? O1S A1APC 601 B 1 HETATM 2 O O2S A1APC . B . I 7 -17.488 8.935 18.566 0.2 46.2 ? O2S A1APC 601 B 1 HETATM 3 O O3S A1APC . B . I 7 -15.642 8.993 20.267 0.2 38.15 -1 O3S A1APC 601 B 1 HETATM 4 C C1 A1APC . B . I 7 -16.162 14.986 16.409 0.2 50.4 ? C1 A1APC 601 B 1 HETATM 5 C C2 A1APC . B . I 7 -14.719 14.847 15.892 0.2 47.73 ? C2 A1APC 601 B 1 HETATM 6 C C3 A1APC . B . I 7 -14.262 13.448 15.706 0.2 45.73 ? C3 A1APC 601 B 1 HETATM 7 C C4 A1APC . B . I 7 -14.567 12.598 16.86 0.2 47.46 ? C4 A1APC 601 B 1 HETATM 8 C C5 A1APC . B . I 7 -16.053 12.649 17.205 0.2 49.4 ? C5 A1APC 601 B 1 HETATM 9 C C6 A1APC . B . I 7 -16.324 11.732 18.368 0.2 49.62 ? C6 A1APC 601 B 1 HETATM 10 O O2 A1APC . B . I 7 -14.605 15.448 14.609 0.2 48.86 ? O2 A1APC 601 B 1 HETATM 11 O O3 A1APC . B . I 7 -12.808 13.517 15.507 0.2 43.1 ? O3 A1APC 601 B 1 HETATM 12 O O4 A1APC . B . I 7 -13.791 13.055 18.004 0.2 46.75 ? O4 A1APC 601 B 1 HETATM 13 O O5 A1APC . B . I 7 -16.505 14.053 17.488 0.2 50.33 ? O5 A1APC 601 B 1 HETATM 14 O O6 A1APC . B . I 7 -15.493 10.602 18.228 0.2 48.28 ? O6 A1APC 601 B 1 HETATM 15 S S1 A1APC . B . I 7 -16.015 9.145 18.813 0.2 40.65 ? S1 A1APC 601 B 1 HETATM 16 O O1 A1APC . B . I 7 -17.046 14.85 15.297 0.2 51.08 ? O1 A1APC 601 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 422 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 16 #