data_9BAZ
#
_model_server_result.job_id            zRgXykKwOQAXc5NyPdPWlQ 
_model_server_result.datetime_utc      '2024-10-11 10:25:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9baz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1301}' 
#
_entry.id    9BAZ 
#
_exptl.entry_id    9BAZ 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              384.411 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            S-ADENOSYL-L-HOMOCYSTEINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9BAZ 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9BAZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 637 A CYS 635 1_555 E ZN ZN . A ZN 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? 
metalc ? metalc2 A SG CYS 639 A CYS 637 1_555 E ZN ZN . A ZN 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? 
metalc ? metalc3 A SG CYS 694 A CYS 692 1_555 E ZN ZN . A ZN 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? 
metalc ? metalc4 A ND1 HIS 696 A HIS 694 1_555 E ZN ZN . A ZN 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? 
#
_chem_comp.formula           'C14 H20 N6 O5 S' 
_chem_comp.formula_weight    384.411 
_chem_comp.id                SAH 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              S-ADENOSYL-L-HOMOCYSTEINE 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA SAH sing 275 n n 
N HN1 SAH sing 276 n n 
N HN2 SAH sing 277 n n 
CA CB SAH sing 278 n n 
CA C SAH sing 279 n n 
CA HA SAH sing 280 n n 
CB CG SAH sing 281 n n 
CB HB1 SAH sing 282 n n 
CB HB2 SAH sing 283 n n 
CG SD SAH sing 284 n n 
CG HG1 SAH sing 285 n n 
CG HG2 SAH sing 286 n n 
SD C5' SAH sing 287 n n 
C O SAH doub 288 n n 
C OXT SAH sing 289 n n 
OXT HXT SAH sing 290 n n 
C5' C4' SAH sing 291 n n 
C5' "H5'1" SAH sing 292 n n 
C5' "H5'2" SAH sing 293 n n 
C4' O4' SAH sing 294 n n 
C4' C3' SAH sing 295 n n 
C4' H4' SAH sing 296 n n 
O4' C1' SAH sing 297 n n 
C3' O3' SAH sing 298 n n 
C3' C2' SAH sing 299 n n 
C3' H3' SAH sing 300 n n 
O3' HO3' SAH sing 301 n n 
C2' O2' SAH sing 302 n n 
C2' C1' SAH sing 303 n n 
C2' H2' SAH sing 304 n n 
O2' HO2' SAH sing 305 n n 
C1' N9 SAH sing 306 n n 
C1' H1' SAH sing 307 n n 
N9 C8 SAH sing 308 n y 
N9 C4 SAH sing 309 n y 
C8 N7 SAH doub 310 n y 
C8 H8 SAH sing 311 n n 
N7 C5 SAH sing 312 n y 
C5 C6 SAH sing 313 n y 
C5 C4 SAH doub 314 n y 
C6 N6 SAH sing 315 n n 
C6 N1 SAH doub 316 n y 
N6 HN61 SAH sing 317 n n 
N6 HN62 SAH sing 318 n n 
N1 C2 SAH sing 319 n y 
C2 N3 SAH doub 320 n y 
C2 H2 SAH sing 321 n n 
N3 C4 SAH sing 322 n y 
#
_atom_sites.entry_id                     9BAZ 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 3 SAH A 1 1301 1301 SAH SAH . 
E 4 ZN A 1 1302 1301 ZN ZN . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N SAH . . . D 3 165.036 177.039 154.48 1 121.07 ? N SAH 1301 A 1 
HETATM 2 C CA SAH . . . D 3 165.294 177.739 155.73 1 119.39 ? CA SAH 1301 A 1 
HETATM 3 C CB SAH . . . D 3 164.043 177.74 156.609 1 120.4 ? CB SAH 1301 A 1 
HETATM 4 C CG SAH . . . D 3 162.82 178.167 155.813 1 121.61 ? CG SAH 1301 A 1 
HETATM 5 S SD SAH . . . D 3 161.312 177.793 156.755 1 128.5 ? SD SAH 1301 A 1 
HETATM 6 C C SAH . . . D 3 166.465 177.12 156.483 1 109.29 ? C SAH 1301 A 1 
HETATM 7 O O SAH . . . D 3 167.485 176.788 155.882 1 110.02 ? O SAH 1301 A 1 
HETATM 8 O OXT SAH . . . D 3 166.29 177.001 157.708 1 108.51 ? OXT SAH 1301 A 1 
HETATM 9 C C5' SAH . . . D 3 160.376 179.322 156.527 1 120.31 ? C5' SAH 1301 A 1 
HETATM 10 C C4' SAH . . . D 3 161.153 180.563 156.942 1 114.89 ? C4' SAH 1301 A 1 
HETATM 11 O O4' SAH . . . D 3 160.65 181.69 156.21 1 118.18 ? O4' SAH 1301 A 1 
HETATM 12 C C3' SAH . . . D 3 161.004 180.935 158.413 1 117.5 ? C3' SAH 1301 A 1 
HETATM 13 O O3' SAH . . . D 3 162.172 181.61 158.8 1 114.41 ? O3' SAH 1301 A 1 
HETATM 14 C C2' SAH . . . D 3 159.818 181.886 158.354 1 117.36 ? C2' SAH 1301 A 1 
HETATM 15 O O2' SAH . . . D 3 159.72 182.654 159.509 1 122.34 ? O2' SAH 1301 A 1 
HETATM 16 C C1' SAH . . . D 3 160.215 182.671 157.107 1 111.25 ? C1' SAH 1301 A 1 
HETATM 17 N N9 SAH . . . D 3 159.161 183.448 156.517 1 108.72 ? N9 SAH 1301 A 1 
HETATM 18 C C8 SAH . . . D 3 157.824 183.161 156.473 1 108.58 ? C8 SAH 1301 A 1 
HETATM 19 N N7 SAH . . . D 3 157.124 184.068 155.862 1 107.85 ? N7 SAH 1301 A 1 
HETATM 20 C C5 SAH . . . D 3 158.046 185.006 155.481 1 109.18 ? C5 SAH 1301 A 1 
HETATM 21 C C6 SAH . . . D 3 157.945 186.222 154.787 1 112.34 ? C6 SAH 1301 A 1 
HETATM 22 N N6 SAH . . . D 3 156.788 186.708 154.342 1 116.82 ? N6 SAH 1301 A 1 
HETATM 23 N N1 SAH . . . D 3 159.064 186.916 154.57 1 110.43 ? N1 SAH 1301 A 1 
HETATM 24 C C2 SAH . . . D 3 160.22 186.437 155.013 1 107.15 ? C2 SAH 1301 A 1 
HETATM 25 N N3 SAH . . . D 3 160.442 185.315 155.671 1 106.07 ? N3 SAH 1301 A 1 
HETATM 26 C C4 SAH . . . D 3 159.318 184.639 155.877 1 108.45 ? C4 SAH 1301 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           306 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           26 
#