data_9BBB # _model_server_result.job_id IkrIjZKOvJtcCTZ52amtVQ _model_server_result.datetime_utc '2024-11-05 11:29:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9bbb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 9BBB # _exptl.entry_id 9BBB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 776.023 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description cobicistat _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9BBB _cell.length_a 76.82 _cell.length_b 101.95 _cell.length_c 126.22 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9BBB _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D 1 1 A,B,C,D 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_567 x,-y+1,-z+2 1 0 0 0 -1 0 0 0 -1 0 101.95 252.44 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 422 A CYS 442 1_555 B FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc2 B FE HEM . A HEM 601 1_555 C N43 A1APA . A A1APA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? # _chem_comp.formula 'C40 H53 N7 O5 S2' _chem_comp.formula_weight 776.023 _chem_comp.id A1APA _chem_comp.mon_nstd_flag . _chem_comp.name cobicistat _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '(1,3-thiazol-5-yl)methyl {(2R,5R)-5-[(2S)-2-(methyl{[2-(propan-2-yl)-1,3-thiazol-4-yl]methyl}carbamamido)-4-(morpholin-4-yl)butanamido]-1,6-diphenylhexan-2-yl}carbamate' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C33 C34 A1APA doub 1 n y C33 C32 A1APA sing 2 n y C34 C35 A1APA sing 3 n y C32 C31 A1APA doub 4 n y C35 C30 A1APA doub 5 n y C31 C30 A1APA sing 6 n y C30 C29 A1APA sing 7 n n O38 C37 A1APA doub 8 n n C27 C26 A1APA sing 9 n n C27 C28 A1APA sing 10 n n C37 O39 A1APA sing 11 n n C37 N36 A1APA sing 12 n n C29 C28 A1APA sing 13 n n C26 C25 A1APA sing 14 n n C28 N36 A1APA sing 15 n n O39 C40 A1APA sing 16 n n C40 C41 A1APA sing 17 n n C46 C25 A1APA sing 18 n n C46 C47 A1APA sing 19 n n C25 N24 A1APA sing 20 n n C48 C47 A1APA doub 21 n y C48 C49 A1APA sing 22 n y C41 C42 A1APA doub 23 n y C41 S45 A1APA sing 24 n y C42 N43 A1APA sing 25 n y C47 C52 A1APA sing 26 n y C15 N16 A1APA sing 27 n n C15 C14 A1APA sing 28 n n C49 C50 A1APA doub 29 n y N24 C22 A1APA sing 30 n n C17 C18 A1APA sing 31 n n C17 N16 A1APA sing 32 n n C18 O19 A1APA sing 33 n n N16 C21 A1APA sing 34 n n C22 C13 A1APA sing 35 n n C22 O23 A1APA doub 36 n n C13 C14 A1APA sing 37 n n C13 N12 A1APA sing 38 n n S45 C44 A1APA sing 39 n y O11 C10 A1APA doub 40 n n N43 C44 A1APA doub 41 n y C52 C51 A1APA doub 42 n y C50 C51 A1APA sing 43 n y C21 C20 A1APA sing 44 n n O19 C20 A1APA sing 45 n n N12 C10 A1APA sing 46 n n C10 N08 A1APA sing 47 n n N08 C07 A1APA sing 48 n n N08 C09 A1APA sing 49 n n C07 C06 A1APA sing 50 n n C06 N05 A1APA sing 51 n y C06 C53 A1APA doub 52 n y N05 C04 A1APA doub 53 n y C53 S54 A1APA sing 54 n y C01 C02 A1APA sing 55 n n C04 S54 A1APA sing 56 n y C04 C02 A1APA sing 57 n n C02 C03 A1APA sing 58 n n C01 H1 A1APA sing 59 n n C01 H2 A1APA sing 60 n n C01 H3 A1APA sing 61 n n C02 H4 A1APA sing 62 n n C03 H5 A1APA sing 63 n n C03 H6 A1APA sing 64 n n C03 H7 A1APA sing 65 n n C07 H8 A1APA sing 66 n n C07 H9 A1APA sing 67 n n C09 H10 A1APA sing 68 n n C09 H11 A1APA sing 69 n n C09 H12 A1APA sing 70 n n C13 H13 A1APA sing 71 n n C14 H14 A1APA sing 72 n n C14 H15 A1APA sing 73 n n C15 H16 A1APA sing 74 n n C15 H17 A1APA sing 75 n n C17 H18 A1APA sing 76 n n C17 H19 A1APA sing 77 n n C18 H20 A1APA sing 78 n n C18 H21 A1APA sing 79 n n C20 H22 A1APA sing 80 n n C20 H23 A1APA sing 81 n n C21 H24 A1APA sing 82 n n C21 H25 A1APA sing 83 n n C25 H26 A1APA sing 84 n n C26 H27 A1APA sing 85 n n C26 H28 A1APA sing 86 n n C27 H29 A1APA sing 87 n n C27 H30 A1APA sing 88 n n C28 H31 A1APA sing 89 n n C29 H32 A1APA sing 90 n n C29 H33 A1APA sing 91 n n C31 H34 A1APA sing 92 n n C32 H35 A1APA sing 93 n n C33 H36 A1APA sing 94 n n C34 H37 A1APA sing 95 n n C35 H38 A1APA sing 96 n n C40 H39 A1APA sing 97 n n C40 H40 A1APA sing 98 n n C42 H41 A1APA sing 99 n n C44 H42 A1APA sing 100 n n C46 H43 A1APA sing 101 n n C46 H44 A1APA sing 102 n n C48 H45 A1APA sing 103 n n C49 H46 A1APA sing 104 n n C50 H47 A1APA sing 105 n n C51 H48 A1APA sing 106 n n C52 H49 A1APA sing 107 n n C53 H50 A1APA sing 108 n n N12 H51 A1APA sing 109 n n N24 H53 A1APA sing 110 n n N36 H54 A1APA sing 111 n n # _atom_sites.entry_id 9BBB _atom_sites.fract_transf_matrix[1][1] 0.013017 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009809 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007923 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 601 601 HEM HEM . C 3 A1APA A 1 602 600 A1APA CBM . D 4 HOH A 1 701 23 HOH HOH . D 4 HOH A 2 702 17 HOH HOH . D 4 HOH A 3 703 26 HOH HOH . D 4 HOH A 4 704 16 HOH HOH . D 4 HOH A 5 705 18 HOH HOH . D 4 HOH A 6 706 9 HOH HOH . D 4 HOH A 7 707 13 HOH HOH . D 4 HOH A 8 708 8 HOH HOH . D 4 HOH A 9 709 4 HOH HOH . D 4 HOH A 10 710 31 HOH HOH . D 4 HOH A 11 711 30 HOH HOH . D 4 HOH A 12 712 3 HOH HOH . D 4 HOH A 13 713 7 HOH HOH . D 4 HOH A 14 714 12 HOH HOH . D 4 HOH A 15 715 2 HOH HOH . D 4 HOH A 16 716 19 HOH HOH . D 4 HOH A 17 717 5 HOH HOH . D 4 HOH A 18 718 1 HOH HOH . D 4 HOH A 19 719 22 HOH HOH . D 4 HOH A 20 720 6 HOH HOH . D 4 HOH A 21 721 15 HOH HOH . D 4 HOH A 22 722 10 HOH HOH . D 4 HOH A 23 723 27 HOH HOH . D 4 HOH A 24 724 20 HOH HOH . D 4 HOH A 25 725 24 HOH HOH . D 4 HOH A 26 726 29 HOH HOH . D 4 HOH A 27 727 14 HOH HOH . D 4 HOH A 28 728 28 HOH HOH . D 4 HOH A 29 729 11 HOH HOH . D 4 HOH A 30 730 25 HOH HOH . D 4 HOH A 31 731 21 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 A1APA . . . C 3 29.886 38.299 140.771 0.92 135.82 ? C01 A1APA 602 A 1 HETATM 2 C C02 A1APA . . . C 3 28.746 38.725 141.714 0.92 130.04 ? C02 A1APA 602 A 1 HETATM 3 C C03 A1APA . . . C 3 28.89 40.22 142.042 0.92 121.53 ? C03 A1APA 602 A 1 HETATM 4 C C04 A1APA . . . C 3 27.383 38.487 141.036 0.92 133.27 ? C04 A1APA 602 A 1 HETATM 5 C C06 A1APA . . . C 3 25.456 38.598 139.815 0.92 132.54 ? C06 A1APA 602 A 1 HETATM 6 C C07 A1APA . . . C 3 24.487 39.241 138.797 0.92 123.3 ? C07 A1APA 602 A 1 HETATM 7 C C09 A1APA . . . C 3 22.317 38.037 139.037 0.92 124.01 ? C09 A1APA 602 A 1 HETATM 8 C C10 A1APA . . . C 3 23.777 37.527 136.988 0.92 126.53 ? C10 A1APA 602 A 1 HETATM 9 C C13 A1APA . . . C 3 24.931 35.563 135.803 0.92 124.07 ? C13 A1APA 602 A 1 HETATM 10 C C14 A1APA . . . C 3 26.328 34.908 135.81 0.92 126.41 ? C14 A1APA 602 A 1 HETATM 11 C C15 A1APA . . . C 3 27.375 35.7 134.991 0.92 125.52 ? C15 A1APA 602 A 1 HETATM 12 C C17 A1APA . . . C 3 26.891 38.234 135.263 0.92 125.06 ? C17 A1APA 602 A 1 HETATM 13 C C18 A1APA . . . C 3 27.818 39.446 135.491 0.92 129.53 ? C18 A1APA 602 A 1 HETATM 14 C C20 A1APA . . . C 3 28.227 38.396 137.622 0.92 132.74 ? C20 A1APA 602 A 1 HETATM 15 C C21 A1APA . . . C 3 28.551 37.167 136.752 0.92 131.37 ? C21 A1APA 602 A 1 HETATM 16 C C22 A1APA . . . C 3 23.806 34.504 135.734 0.92 118.93 ? C22 A1APA 602 A 1 HETATM 17 C C25 A1APA . . . C 3 21.813 34.292 134.151 0.92 106.26 ? C25 A1APA 602 A 1 HETATM 18 C C26 A1APA . . . C 3 22.531 34.508 132.806 0.92 108.91 ? C26 A1APA 602 A 1 HETATM 19 C C27 A1APA . . . C 3 22.812 33.141 132.153 0.92 106.6 ? C27 A1APA 602 A 1 HETATM 20 C C28 A1APA . . . C 3 23.403 32.14 133.177 0.92 107.89 ? C28 A1APA 602 A 1 HETATM 21 C C29 A1APA . . . C 3 24.734 31.504 132.702 0.92 110.7 ? C29 A1APA 602 A 1 HETATM 22 C C30 A1APA . . . C 3 24.895 31.507 131.169 0.92 111.99 ? C30 A1APA 602 A 1 HETATM 23 C C31 A1APA . . . C 3 25.678 32.491 130.55 0.92 117.08 ? C31 A1APA 602 A 1 HETATM 24 C C32 A1APA . . . C 3 25.823 32.494 129.159 0.92 117.25 ? C32 A1APA 602 A 1 HETATM 25 C C33 A1APA . . . C 3 25.193 31.507 128.392 0.92 116.13 ? C33 A1APA 602 A 1 HETATM 26 C C34 A1APA . . . C 3 24.421 30.516 129.007 0.92 109.82 ? C34 A1APA 602 A 1 HETATM 27 C C35 A1APA . . . C 3 24.276 30.516 130.397 0.92 108.72 ? C35 A1APA 602 A 1 HETATM 28 C C37 A1APA . . . C 3 21.387 30.576 132.654 0.92 95.76 ? C37 A1APA 602 A 1 HETATM 29 C C40 A1APA . . . C 3 19.836 28.769 133.23 0.92 84.61 ? C40 A1APA 602 A 1 HETATM 30 C C41 A1APA . . . C 3 19.114 28.446 134.544 0.92 79.36 ? C41 A1APA 602 A 1 HETATM 31 C C42 A1APA . . . C 3 17.816 28.058 134.892 0.92 77.35 ? C42 A1APA 602 A 1 HETATM 32 C C44 A1APA . . . C 3 18.766 28.138 136.997 0.92 82.81 ? C44 A1APA 602 A 1 HETATM 33 C C46 A1APA . . . C 3 20.347 34.752 134.084 0.92 97.31 ? C46 A1APA 602 A 1 HETATM 34 C C47 A1APA . . . C 3 19.582 33.766 134.979 0.92 94.62 ? C47 A1APA 602 A 1 HETATM 35 C C48 A1APA . . . C 3 18.783 32.782 134.392 0.92 85.53 ? C48 A1APA 602 A 1 HETATM 36 C C49 A1APA . . . C 3 18.1 31.873 135.204 0.92 81.81 ? C49 A1APA 602 A 1 HETATM 37 C C50 A1APA . . . C 3 18.218 31.946 136.597 0.92 78.45 ? C50 A1APA 602 A 1 HETATM 38 C C51 A1APA . . . C 3 19.022 32.928 137.184 0.92 78.67 ? C51 A1APA 602 A 1 HETATM 39 C C52 A1APA . . . C 3 19.71 33.837 136.372 0.92 89.26 ? C52 A1APA 602 A 1 HETATM 40 C C53 A1APA . . . C 3 25.218 37.362 140.463 0.92 132.73 ? C53 A1APA 602 A 1 HETATM 41 N N05 A1APA . . . C 3 26.641 39.183 140.156 0.92 134.51 ? N05 A1APA 602 A 1 HETATM 42 N N08 A1APA . . . C 3 23.543 38.248 138.252 0.92 125.09 ? N08 A1APA 602 A 1 HETATM 43 N N12 A1APA . . . C 3 24.763 36.436 136.977 0.92 127.55 ? N12 A1APA 602 A 1 HETATM 44 N N16 A1APA . . . C 3 27.587 36.998 135.657 0.92 127.46 ? N16 A1APA 602 A 1 HETATM 45 N N24 A1APA . . . C 3 22.517 34.994 135.231 0.92 115.41 ? N24 A1APA 602 A 1 HETATM 46 N N36 A1APA . . . C 3 22.425 31.099 133.555 0.92 101.14 ? N36 A1APA 602 A 1 HETATM 47 N N43 A1APA . . . C 3 17.671 27.898 136.234 0.92 78.83 ? N43 A1APA 602 A 1 HETATM 48 O O11 A1APA . . . C 3 23.164 37.817 135.974 0.92 123.66 ? O11 A1APA 602 A 1 HETATM 49 O O19 A1APA . . . C 3 28.161 39.612 136.869 0.92 134.05 ? O19 A1APA 602 A 1 HETATM 50 O O23 A1APA . . . C 3 23.996 33.352 136.089 0.92 119.34 ? O23 A1APA 602 A 1 HETATM 51 O O38 A1APA . . . C 3 21.512 30.477 131.449 0.92 99.72 ? O38 A1APA 602 A 1 HETATM 52 O O39 A1APA . . . C 3 20.148 30.161 133.222 0.92 86.98 ? O39 A1APA 602 A 1 HETATM 53 S S45 A1APA . . . C 3 20.042 28.587 135.953 0.92 80.28 ? S45 A1APA 602 A 1 HETATM 54 S S54 A1APA . . . C 3 26.561 37.067 141.472 0.92 134.86 ? S54 A1APA 602 A 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 215 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 54 #