data_9BBP # _model_server_result.job_id IE3Ffr66-XgcM4JTD9V8Zg _model_server_result.datetime_utc '2025-07-12 19:05:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9bbp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":405}' # _entry.id 9BBP # _exptl.entry_id 9BBP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 471.568 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-{(2R)-1-amino-3-[(2R,3S)-2-hydroxypyrrolidin-3-yl]propan-2-yl}-N~2~-[4-(6-fluoropyridin-3-yl)benzoyl]-L-leucinamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9BBP _cell.length_a 45.642 _cell.length_b 64.19 _cell.length_c 104.816 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9BBP _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall 'P 2 2ab' _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 64.19 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 145 A CYS 145 1_555 F C09 A1ALW . A A1ALW 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.734 ? covale ? covale2 B C GLY . A GLY 401 1_555 C N VAL . A VAL 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale3 C C VAL . A VAL 402 1_555 D N THR . A THR 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale4 D C THR . A THR 403 1_555 E N PHE . A PHE 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? # _chem_comp.formula 'C25 H34 F N5 O3' _chem_comp.formula_weight 471.568 _chem_comp.id A1ALW _chem_comp.mon_nstd_flag . _chem_comp.name N-{(2R)-1-amino-3-[(2R,3S)-2-hydroxypyrrolidin-3-yl]propan-2-yl}-N~2~-[4-(6-fluoropyridin-3-yl)benzoyl]-L-leucinamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C02 C06 A1ALW sing 1 n n C02 N03 A1ALW sing 2 n n C02 O01 A1ALW sing 3 n n C04 C05 A1ALW sing 4 n n C04 N03 A1ALW sing 5 n n C05 C06 A1ALW sing 6 n n C06 C07 A1ALW sing 7 n n C07 C08 A1ALW sing 8 n n C08 C09 A1ALW sing 9 n n C08 N11 A1ALW sing 10 n n C09 N10 A1ALW sing 11 n n C12 C13 A1ALW sing 12 n n C12 N11 A1ALW sing 13 n n C12 O34 A1ALW doub 14 n n C13 C14 A1ALW sing 15 n n C13 N18 A1ALW sing 16 n n C14 C15 A1ALW sing 17 n n C15 C16 A1ALW sing 18 n n C15 C17 A1ALW sing 19 n n C19 C20 A1ALW sing 20 n n C19 N18 A1ALW sing 21 n n C19 O33 A1ALW doub 22 n n C20 C21 A1ALW doub 23 n y C20 C32 A1ALW sing 24 n y C21 C22 A1ALW sing 25 n y C22 C23 A1ALW doub 26 n y C23 C24 A1ALW sing 27 n n C23 C31 A1ALW sing 28 n y C24 C25 A1ALW doub 29 n y C24 C30 A1ALW sing 30 n y C25 N26 A1ALW sing 31 n y C27 C29 A1ALW sing 32 n y C27 F28 A1ALW sing 33 n n C27 N26 A1ALW doub 34 n y C29 C30 A1ALW doub 35 n y C31 C32 A1ALW doub 36 n y C13 H131 A1ALW sing 37 n n C15 H151 A1ALW sing 38 n n C17 H173 A1ALW sing 39 n n C17 H172 A1ALW sing 40 n n C17 H171 A1ALW sing 41 n n C21 H211 A1ALW sing 42 n n C22 H221 A1ALW sing 43 n n C02 H021 A1ALW sing 44 n n C04 H041 A1ALW sing 45 n n C04 H042 A1ALW sing 46 n n C05 H052 A1ALW sing 47 n n C05 H051 A1ALW sing 48 n n C06 H061 A1ALW sing 49 n n C07 H071 A1ALW sing 50 n n C07 H072 A1ALW sing 51 n n C08 H081 A1ALW sing 52 n n C09 H092 A1ALW sing 53 n n C09 H091 A1ALW sing 54 n n C14 H141 A1ALW sing 55 n n C14 H142 A1ALW sing 56 n n C16 H162 A1ALW sing 57 n n C16 H163 A1ALW sing 58 n n C16 H161 A1ALW sing 59 n n C25 H251 A1ALW sing 60 n n C29 H291 A1ALW sing 61 n n C30 H301 A1ALW sing 62 n n C31 H311 A1ALW sing 63 n n C32 H321 A1ALW sing 64 n n N03 H1 A1ALW sing 65 n n N10 H102 A1ALW sing 66 n n N10 H2 A1ALW sing 67 n n N11 H111 A1ALW sing 68 n n N18 H181 A1ALW sing 69 n n O01 H011 A1ALW sing 70 n n # _atom_sites.entry_id 9BBP _atom_sites.fract_transf_matrix[1][1] 0.02191 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015579 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009541 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GLY A 1 401 302 GLY GLY . C 3 VAL A 1 402 303 VAL VAL . D 4 THR A 1 403 304 THR THR . E 5 PHE A 1 404 305 PHE PHE . F 6 A1ALW A 1 405 401 A1ALW LIG . G 7 HOH A 1 501 143 HOH HOH . G 7 HOH A 2 502 96 HOH HOH . G 7 HOH A 3 503 92 HOH HOH . G 7 HOH A 4 504 43 HOH HOH . G 7 HOH A 5 505 115 HOH HOH . G 7 HOH A 6 506 118 HOH HOH . G 7 HOH A 7 507 124 HOH HOH . G 7 HOH A 8 508 139 HOH HOH . G 7 HOH A 9 509 85 HOH HOH . G 7 HOH A 10 510 123 HOH HOH . G 7 HOH A 11 511 5 HOH HOH . G 7 HOH A 12 512 49 HOH HOH . G 7 HOH A 13 513 69 HOH HOH . G 7 HOH A 14 514 172 HOH HOH . G 7 HOH A 15 515 56 HOH HOH . G 7 HOH A 16 516 27 HOH HOH . G 7 HOH A 17 517 55 HOH HOH . G 7 HOH A 18 518 73 HOH HOH . G 7 HOH A 19 519 77 HOH HOH . G 7 HOH A 20 520 22 HOH HOH . G 7 HOH A 21 521 28 HOH HOH . G 7 HOH A 22 522 33 HOH HOH . G 7 HOH A 23 523 99 HOH HOH . G 7 HOH A 24 524 88 HOH HOH . G 7 HOH A 25 525 97 HOH HOH . G 7 HOH A 26 526 136 HOH HOH . G 7 HOH A 27 527 6 HOH HOH . G 7 HOH A 28 528 25 HOH HOH . G 7 HOH A 29 529 18 HOH HOH . G 7 HOH A 30 530 50 HOH HOH . G 7 HOH A 31 531 23 HOH HOH . G 7 HOH A 32 532 140 HOH HOH . G 7 HOH A 33 533 20 HOH HOH . G 7 HOH A 34 534 40 HOH HOH . G 7 HOH A 35 535 67 HOH HOH . G 7 HOH A 36 536 29 HOH HOH . G 7 HOH A 37 537 51 HOH HOH . G 7 HOH A 38 538 26 HOH HOH . G 7 HOH A 39 539 38 HOH HOH . G 7 HOH A 40 540 138 HOH HOH . G 7 HOH A 41 541 16 HOH HOH . G 7 HOH A 42 542 45 HOH HOH . G 7 HOH A 43 543 19 HOH HOH . G 7 HOH A 44 544 57 HOH HOH . G 7 HOH A 45 545 78 HOH HOH . G 7 HOH A 46 546 44 HOH HOH . G 7 HOH A 47 547 111 HOH HOH . G 7 HOH A 48 548 66 HOH HOH . G 7 HOH A 49 549 79 HOH HOH . G 7 HOH A 50 550 2 HOH HOH . G 7 HOH A 51 551 165 HOH HOH . G 7 HOH A 52 552 76 HOH HOH . G 7 HOH A 53 553 114 HOH HOH . G 7 HOH A 54 554 145 HOH HOH . G 7 HOH A 55 555 61 HOH HOH . G 7 HOH A 56 556 167 HOH HOH . G 7 HOH A 57 557 14 HOH HOH . G 7 HOH A 58 558 71 HOH HOH . G 7 HOH A 59 559 60 HOH HOH . G 7 HOH A 60 560 42 HOH HOH . G 7 HOH A 61 561 4 HOH HOH . G 7 HOH A 62 562 48 HOH HOH . G 7 HOH A 63 563 58 HOH HOH . G 7 HOH A 64 564 1 HOH HOH . G 7 HOH A 65 565 17 HOH HOH . G 7 HOH A 66 566 10 HOH HOH . G 7 HOH A 67 567 116 HOH HOH . G 7 HOH A 68 568 173 HOH HOH . G 7 HOH A 69 569 74 HOH HOH . G 7 HOH A 70 570 106 HOH HOH . G 7 HOH A 71 571 62 HOH HOH . G 7 HOH A 72 572 41 HOH HOH . G 7 HOH A 73 573 9 HOH HOH . G 7 HOH A 74 574 30 HOH HOH . G 7 HOH A 75 575 68 HOH HOH . G 7 HOH A 76 576 128 HOH HOH . G 7 HOH A 77 577 8 HOH HOH . G 7 HOH A 78 578 83 HOH HOH . G 7 HOH A 79 579 32 HOH HOH . G 7 HOH A 80 580 46 HOH HOH . G 7 HOH A 81 581 31 HOH HOH . G 7 HOH A 82 582 15 HOH HOH . G 7 HOH A 83 583 13 HOH HOH . G 7 HOH A 84 584 39 HOH HOH . G 7 HOH A 85 585 35 HOH HOH . G 7 HOH A 86 586 135 HOH HOH . G 7 HOH A 87 587 72 HOH HOH . G 7 HOH A 88 588 34 HOH HOH . G 7 HOH A 89 589 12 HOH HOH . G 7 HOH A 90 590 3 HOH HOH . G 7 HOH A 91 591 147 HOH HOH . G 7 HOH A 92 592 37 HOH HOH . G 7 HOH A 93 593 53 HOH HOH . G 7 HOH A 94 594 104 HOH HOH . G 7 HOH A 95 595 52 HOH HOH . G 7 HOH A 96 596 36 HOH HOH . G 7 HOH A 97 597 94 HOH HOH . G 7 HOH A 98 598 65 HOH HOH . G 7 HOH A 99 599 146 HOH HOH . G 7 HOH A 100 600 21 HOH HOH . G 7 HOH A 101 601 80 HOH HOH . G 7 HOH A 102 602 81 HOH HOH . G 7 HOH A 103 603 120 HOH HOH . G 7 HOH A 104 604 119 HOH HOH . G 7 HOH A 105 605 11 HOH HOH . G 7 HOH A 106 606 86 HOH HOH . G 7 HOH A 107 607 141 HOH HOH . G 7 HOH A 108 608 64 HOH HOH . G 7 HOH A 109 609 90 HOH HOH . G 7 HOH A 110 610 24 HOH HOH . G 7 HOH A 111 611 121 HOH HOH . G 7 HOH A 112 612 75 HOH HOH . G 7 HOH A 113 613 70 HOH HOH . G 7 HOH A 114 614 105 HOH HOH . G 7 HOH A 115 615 93 HOH HOH . G 7 HOH A 116 616 63 HOH HOH . G 7 HOH A 117 617 134 HOH HOH . G 7 HOH A 118 618 87 HOH HOH . G 7 HOH A 119 619 164 HOH HOH . G 7 HOH A 120 620 112 HOH HOH . G 7 HOH A 121 621 154 HOH HOH . G 7 HOH A 122 622 7 HOH HOH . G 7 HOH A 123 623 125 HOH HOH . G 7 HOH A 124 624 171 HOH HOH . G 7 HOH A 125 625 109 HOH HOH . G 7 HOH A 126 626 59 HOH HOH . G 7 HOH A 127 627 107 HOH HOH . G 7 HOH A 128 628 129 HOH HOH . G 7 HOH A 129 629 169 HOH HOH . G 7 HOH A 130 630 156 HOH HOH . G 7 HOH A 131 631 127 HOH HOH . G 7 HOH A 132 632 98 HOH HOH . G 7 HOH A 133 633 102 HOH HOH . G 7 HOH A 134 634 84 HOH HOH . G 7 HOH A 135 635 47 HOH HOH . G 7 HOH A 136 636 95 HOH HOH . G 7 HOH A 137 637 170 HOH HOH . G 7 HOH A 138 638 133 HOH HOH . G 7 HOH A 139 639 168 HOH HOH . G 7 HOH A 140 640 151 HOH HOH . G 7 HOH A 141 641 101 HOH HOH . G 7 HOH A 142 642 126 HOH HOH . G 7 HOH A 143 643 122 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 A1ALW . . . F 6 -18.801 16.537 -26.338 1 25.2 ? C13 A1ALW 405 A 1 HETATM 2 C C15 A1ALW . . . F 6 -19.659 14.249 -27.029 1 27.94 ? C15 A1ALW 405 A 1 HETATM 3 C C17 A1ALW . . . F 6 -18.244 13.723 -27.056 1 27.59 ? C17 A1ALW 405 A 1 HETATM 4 C C20 A1ALW . . . F 6 -19.565 16.732 -22.49 1 24.53 ? C20 A1ALW 405 A 1 HETATM 5 C C21 A1ALW . . . F 6 -19.697 17.762 -21.53 1 23.87 ? C21 A1ALW 405 A 1 HETATM 6 C C22 A1ALW . . . F 6 -20.282 17.439 -20.308 1 24.43 ? C22 A1ALW 405 A 1 HETATM 7 C C24 A1ALW . . . F 6 -21.337 15.792 -18.645 1 24.94 ? C24 A1ALW 405 A 1 HETATM 8 C C02 A1ALW . . . F 6 -16.241 20.966 -24.362 1 29.82 ? C02 A1ALW 405 A 1 HETATM 9 C C04 A1ALW . . . F 6 -18.16 22.32 -23.882 1 26.98 ? C04 A1ALW 405 A 1 HETATM 10 C C05 A1ALW . . . F 6 -18.271 21.662 -25.352 1 26.67 ? C05 A1ALW 405 A 1 HETATM 11 C C06 A1ALW . . . F 6 -17.047 20.679 -25.445 1 24.62 ? C06 A1ALW 405 A 1 HETATM 12 C C07 A1ALW . . . F 6 -16.421 20.65 -26.954 1 24.66 ? C07 A1ALW 405 A 1 HETATM 13 C C08 A1ALW . . . F 6 -17.404 19.894 -27.899 1 26.73 ? C08 A1ALW 405 A 1 HETATM 14 C C09 A1ALW . . . F 6 -16.913 19.873 -29.359 1 22.67 ? C09 A1ALW 405 A 1 HETATM 15 C C12 A1ALW . . . F 6 -18.726 18.02 -26.73 1 24.28 ? C12 A1ALW 405 A 1 HETATM 16 C C14 A1ALW . . . F 6 -19.633 15.743 -27.371 1 24.64 ? C14 A1ALW 405 A 1 HETATM 17 C C16 A1ALW . . . F 6 -20.52 13.472 -28.05 1 29.53 ? C16 A1ALW 405 A 1 HETATM 18 C C19 A1ALW . . . F 6 -18.899 16.981 -23.865 1 25.52 ? C19 A1ALW 405 A 1 HETATM 19 C C23 A1ALW . . . F 6 -20.725 16.132 -20.031 1 24.83 ? C23 A1ALW 405 A 1 HETATM 20 C C25 A1ALW . . . F 6 -20.963 16.576 -17.57 1 27.09 ? C25 A1ALW 405 A 1 HETATM 21 C C27 A1ALW . . . F 6 -22.24 15.332 -16.147 1 26.85 ? C27 A1ALW 405 A 1 HETATM 22 C C29 A1ALW . . . F 6 -22.638 14.457 -17.16 1 26.48 ? C29 A1ALW 405 A 1 HETATM 23 C C30 A1ALW . . . F 6 -22.177 14.677 -18.462 1 28.77 ? C30 A1ALW 405 A 1 HETATM 24 C C31 A1ALW . . . F 6 -20.571 15.114 -20.968 1 26.92 ? C31 A1ALW 405 A 1 HETATM 25 C C32 A1ALW . . . F 6 -19.988 15.44 -22.214 1 24.77 ? C32 A1ALW 405 A 1 HETATM 26 F F28 A1ALW . . . F 6 -22.672 15.121 -14.875 1 28.67 ? F28 A1ALW 405 A 1 HETATM 27 N N03 A1ALW . . . F 6 -16.864 22.305 -23.616 1 27.2 ? N03 A1ALW 405 A 1 HETATM 28 N N10 A1ALW . . . F 6 -17.618 20.868 -30.175 1 27.06 ? N10 A1ALW 405 A 1 HETATM 29 N N11 A1ALW . . . F 6 -17.529 18.49 -27.489 1 27.83 ? N11 A1ALW 405 A 1 HETATM 30 N N18 A1ALW . . . F 6 -19.449 16.333 -25.063 1 25.11 ? N18 A1ALW 405 A 1 HETATM 31 N N26 A1ALW . . . F 6 -21.435 16.357 -16.345 1 26.55 ? N26 A1ALW 405 A 1 HETATM 32 O O01 A1ALW . . . F 6 -14.91 21.179 -24.537 1 23.41 ? O01 A1ALW 405 A 1 HETATM 33 O O33 A1ALW . . . F 6 -17.926 17.653 -23.99 1 22.4 ? O33 A1ALW 405 A 1 HETATM 34 O O34 A1ALW . . . F 6 -19.581 18.784 -26.427 1 27.72 ? O34 A1ALW 405 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 254 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 34 #