data_9BFE # _model_server_result.job_id yn0D7goerRgg-mTJCsydfQ _model_server_result.datetime_utc '2025-01-05 05:13:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9bfe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1101}' # _entry.id 9BFE # _exptl.entry_id 9BFE _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 947.902 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(7S,10aR)-1-methyl-4-{4-[(5R)-1,1,5-trihydroxy-4,4-dimethyl-1,6,11-trioxo-2-oxa-7,10-diaza-1lambda~5~-phosphadodecan-12-yl]phenyl}-3,5,6,7,8,9,10,10a-octahydrocycloocta[d]pyridazin-7-yl [2-({N-[(2R)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl]carbamate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9BFE _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9BFE _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A OG SER 563 A SER 563 1_555 C P1 A1AN1 . A A1AN1 1101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.619 ? covale ? covale2 C P2 A1AN1 . A A1AN1 1101 1_555 B OG SER 1007 B SER 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.612 ? # _chem_comp.formula 'C39 H63 N7 O16 P2' _chem_comp.formula_weight 947.902 _chem_comp.id A1AN1 _chem_comp.mon_nstd_flag . _chem_comp.name '(7S,10aR)-1-methyl-4-{4-[(5R)-1,1,5-trihydroxy-4,4-dimethyl-1,6,11-trioxo-2-oxa-7,10-diaza-1lambda~5~-phosphadodecan-12-yl]phenyl}-3,5,6,7,8,9,10,10a-octahydrocycloocta[d]pyridazin-7-yl [2-({N-[(2R)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl]carbamate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C16 C14 A1AN1 sing 1 n n C10 N3 A1AN1 sing 2 n n C10 C11 A1AN1 sing 3 n n O1 C9 A1AN1 doub 4 n n C15 C14 A1AN1 sing 5 n n O5 P1 A1AN1 sing 6 n n C6 C5 A1AN1 doub 7 n y C6 C7 A1AN1 sing 8 n y N3 C9 A1AN1 sing 9 n n C9 C8 A1AN1 sing 10 n n C5 C4 A1AN1 sing 11 n y O4 P1 A1AN1 sing 12 n n O4 C17 A1AN1 sing 13 n n O2 C12 A1AN1 doub 14 n n C14 C17 A1AN1 sing 15 n n C14 C13 A1AN1 sing 16 n n C8 C7 A1AN1 sing 17 n n C11 N4 A1AN1 sing 18 n n C38 C39 A1AN1 sing 19 n n C38 C37 A1AN1 sing 20 n n P1 O6 A1AN1 doub 21 n n C39 C20 A1AN1 sing 22 n n C39 C2 A1AN1 sing 23 n n C21 C20 A1AN1 sing 24 n n C21 C22 A1AN1 sing 25 n n C7 C18 A1AN1 doub 26 n y C12 N4 A1AN1 sing 27 n n C12 C13 A1AN1 sing 28 n n O16 P2 A1AN1 doub 29 n n C20 C3 A1AN1 doub 30 n n C23 O8 A1AN1 sing 31 n n C23 C22 A1AN1 sing 32 n n C23 C36 A1AN1 sing 33 n n C4 C3 A1AN1 sing 34 n n C4 C19 A1AN1 doub 35 n y C13 O3 A1AN1 sing 36 n n O8 C24 A1AN1 sing 37 n n C1 C2 A1AN1 sing 38 n n C3 N2 A1AN1 sing 39 n n C34 C32 A1AN1 sing 40 n n C2 N1 A1AN1 doub 41 n n C35 O13 A1AN1 sing 42 n n C35 C32 A1AN1 sing 43 n n O14 P2 A1AN1 sing 44 n n C37 C36 A1AN1 sing 45 n n C18 C19 A1AN1 sing 46 n y P2 O13 A1AN1 sing 47 n n O12 C31 A1AN1 sing 48 n n C32 C31 A1AN1 sing 49 n n C32 C33 A1AN1 sing 50 n n N1 N2 A1AN1 sing 51 n n C24 O9 A1AN1 doub 52 n n C24 N5 A1AN1 sing 53 n n C29 N7 A1AN1 sing 54 n n C29 C28 A1AN1 sing 55 n n N7 C30 A1AN1 sing 56 n n C31 C30 A1AN1 sing 57 n n C26 C25 A1AN1 sing 58 n n C26 N6 A1AN1 sing 59 n n N5 C25 A1AN1 sing 60 n n C30 O11 A1AN1 doub 61 n n C28 C27 A1AN1 sing 62 n n N6 C27 A1AN1 sing 63 n n C27 O10 A1AN1 doub 64 n n C5 H5 A1AN1 sing 65 n n C6 H6 A1AN1 sing 66 n n C11 H12 A1AN1 sing 67 n n C11 H13 A1AN1 sing 68 n n C8 H8 A1AN1 sing 69 n n C8 H7 A1AN1 sing 70 n n C10 H10 A1AN1 sing 71 n n C10 H11 A1AN1 sing 72 n n C13 H15 A1AN1 sing 73 n n N2 H4 A1AN1 sing 74 n n N3 H9 A1AN1 sing 75 n n C1 H1 A1AN1 sing 76 n n C1 H2 A1AN1 sing 77 n n C1 H3 A1AN1 sing 78 n n C15 H19 A1AN1 sing 79 n n C15 H17 A1AN1 sing 80 n n C15 H18 A1AN1 sing 81 n n C16 H20 A1AN1 sing 82 n n C16 H21 A1AN1 sing 83 n n C16 H22 A1AN1 sing 84 n n C17 H24 A1AN1 sing 85 n n C17 H23 A1AN1 sing 86 n n C18 H25 A1AN1 sing 87 n n C19 H26 A1AN1 sing 88 n n C21 H28 A1AN1 sing 89 n n C21 H27 A1AN1 sing 90 n n C22 H29 A1AN1 sing 91 n n C22 H30 A1AN1 sing 92 n n C23 H31 A1AN1 sing 93 n n C25 H34 A1AN1 sing 94 n n C25 H33 A1AN1 sing 95 n n C26 H35 A1AN1 sing 96 n n C26 H36 A1AN1 sing 97 n n C28 H39 A1AN1 sing 98 n n C28 H38 A1AN1 sing 99 n n C29 H41 A1AN1 sing 100 n n C29 H40 A1AN1 sing 101 n n C31 H43 A1AN1 sing 102 n n C33 H46 A1AN1 sing 103 n n C33 H47 A1AN1 sing 104 n n C33 H45 A1AN1 sing 105 n n C34 H49 A1AN1 sing 106 n n C34 H50 A1AN1 sing 107 n n C34 H48 A1AN1 sing 108 n n C35 H52 A1AN1 sing 109 n n C35 H51 A1AN1 sing 110 n n C36 H53 A1AN1 sing 111 n n C36 H54 A1AN1 sing 112 n n C37 H56 A1AN1 sing 113 n n C37 H55 A1AN1 sing 114 n n C38 H58 A1AN1 sing 115 n n C38 H57 A1AN1 sing 116 n n C39 H59 A1AN1 sing 117 n n N4 H14 A1AN1 sing 118 n n N5 H32 A1AN1 sing 119 n n N6 H37 A1AN1 sing 120 n n N7 H42 A1AN1 sing 121 n n O12 H44 A1AN1 sing 122 n n O14 H62 A1AN1 sing 123 n n O3 H16 A1AN1 sing 124 n n O5 H64 A1AN1 sing 125 n n P2 O7 A1AN1 sing 126 n n P1 O15 A1AN1 sing 127 n n O7 H60 A1AN1 sing 128 n n O15 H61 A1AN1 sing 129 n n # _atom_sites.entry_id 9BFE _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 A1AN1 A 1 1101 1102 A1AN1 DRG . D 4 AMP B 1 1101 1101 AMP AMP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 A1AN1 . . . C 3 130.052 143.602 137.402 1 169.26 ? C4 A1AN1 1101 A 1 HETATM 2 C C14 A1AN1 . . . C 3 137.129 144.65 130.43 1 176.33 ? C14 A1AN1 1101 A 1 HETATM 3 C C5 A1AN1 . . . C 3 131.347 144.009 137.694 1 172.45 ? C5 A1AN1 1101 A 1 HETATM 4 C C6 A1AN1 . . . C 3 132.383 143.739 136.817 1 173.29 ? C6 A1AN1 1101 A 1 HETATM 5 C C11 A1AN1 . . . C 3 132.884 145.052 132.132 1 175.52 ? C11 A1AN1 1101 A 1 HETATM 6 C C7 A1AN1 . . . C 3 132.16 143.047 135.637 1 172.74 ? C7 A1AN1 1101 A 1 HETATM 7 C C8 A1AN1 . . . C 3 133.277 142.752 134.667 1 173.98 ? C8 A1AN1 1101 A 1 HETATM 8 C C9 A1AN1 . . . C 3 134.159 143.964 134.503 1 174.79 ? C9 A1AN1 1101 A 1 HETATM 9 C C10 A1AN1 . . . C 3 132.493 145.479 133.526 1 174.43 ? C10 A1AN1 1101 A 1 HETATM 10 C C12 A1AN1 . . . C 3 134.799 145.421 130.637 1 178.1 ? C12 A1AN1 1101 A 1 HETATM 11 C C13 A1AN1 . . . C 3 135.665 144.22 130.307 1 176.91 ? C13 A1AN1 1101 A 1 HETATM 12 N N1 A1AN1 . . . C 3 127.923 145.476 139.808 1 175.97 ? N1 A1AN1 1101 A 1 HETATM 13 N N2 A1AN1 . . . C 3 128.862 145.101 138.879 1 173.87 ? N2 A1AN1 1101 A 1 HETATM 14 C C3 A1AN1 . . . C 3 128.938 143.876 138.344 1 170 ? C3 A1AN1 1101 A 1 HETATM 15 N N3 A1AN1 . . . C 3 133.505 145.128 134.512 1 174.4 ? N3 A1AN1 1101 A 1 HETATM 16 C C1 A1AN1 . . . C 3 125.575 145.513 140.186 1 178.37 ? C1 A1AN1 1101 A 1 HETATM 17 C C15 A1AN1 . . . C 3 137.269 145.643 131.588 1 178.26 ? C15 A1AN1 1101 A 1 HETATM 18 C C16 A1AN1 . . . C 3 137.463 145.421 129.15 1 175.26 ? C16 A1AN1 1101 A 1 HETATM 19 C C17 A1AN1 . . . C 3 138.206 143.578 130.557 1 174.36 ? C17 A1AN1 1101 A 1 HETATM 20 C C18 A1AN1 . . . C 3 130.868 142.651 135.35 1 172.33 ? C18 A1AN1 1101 A 1 HETATM 21 C C19 A1AN1 . . . C 3 129.824 142.917 136.216 1 171.21 ? C19 A1AN1 1101 A 1 HETATM 22 C C2 A1AN1 . . . C 3 126.83 144.819 139.769 1 176.84 ? C2 A1AN1 1101 A 1 HETATM 23 C C20 A1AN1 . . . C 3 128.003 142.951 138.652 1 169.21 ? C20 A1AN1 1101 A 1 HETATM 24 C C21 A1AN1 . . . C 3 128.169 141.475 138.388 1 171.87 ? C21 A1AN1 1101 A 1 HETATM 25 C C22 A1AN1 . . . C 3 127.182 141.055 137.321 1 172.37 ? C22 A1AN1 1101 A 1 HETATM 26 C C23 A1AN1 . . . C 3 126.033 140.199 137.808 1 170.37 ? C23 A1AN1 1101 A 1 HETATM 27 C C24 A1AN1 . . . C 3 125.699 138.122 138.911 1 173.24 ? C24 A1AN1 1101 A 1 HETATM 28 C C25 A1AN1 . . . C 3 124.119 137.428 137.197 1 175.44 ? C25 A1AN1 1101 A 1 HETATM 29 C C26 A1AN1 . . . C 3 123.024 136.612 137.842 1 176.01 ? C26 A1AN1 1101 A 1 HETATM 30 C C27 A1AN1 . . . C 3 122.802 134.219 137.325 1 174.69 ? C27 A1AN1 1101 A 1 HETATM 31 C C28 A1AN1 . . . C 3 124.207 133.767 137.663 1 174.24 ? C28 A1AN1 1101 A 1 HETATM 32 C C29 A1AN1 . . . C 3 124.85 132.97 136.551 1 175.59 ? C29 A1AN1 1101 A 1 HETATM 33 C C30 A1AN1 . . . C 3 124.287 130.628 137.008 1 177.81 ? C30 A1AN1 1101 A 1 HETATM 34 C C31 A1AN1 . . . C 3 123.315 130.436 138.156 1 175.81 ? C31 A1AN1 1101 A 1 HETATM 35 C C32 A1AN1 . . . C 3 122.163 129.519 137.742 1 173.21 ? C32 A1AN1 1101 A 1 HETATM 36 C C33 A1AN1 . . . C 3 121.337 130.217 136.66 1 173.62 ? C33 A1AN1 1101 A 1 HETATM 37 C C34 A1AN1 . . . C 3 121.263 129.292 138.958 1 174.51 ? C34 A1AN1 1101 A 1 HETATM 38 C C35 A1AN1 . . . C 3 122.624 128.161 137.225 1 175.23 ? C35 A1AN1 1101 A 1 HETATM 39 C C36 A1AN1 . . . C 3 125.088 140.896 138.777 1 171.45 ? C36 A1AN1 1101 A 1 HETATM 40 C C37 A1AN1 . . . C 3 125.646 141.136 140.179 1 172.94 ? C37 A1AN1 1101 A 1 HETATM 41 C C38 A1AN1 . . . C 3 126.247 142.511 140.469 1 173.7 ? C38 A1AN1 1101 A 1 HETATM 42 C C39 A1AN1 . . . C 3 126.698 143.399 139.285 1 172.98 ? C39 A1AN1 1101 A 1 HETATM 43 N N4 A1AN1 . . . C 3 134.239 145.484 131.835 1 178.14 ? N4 A1AN1 1101 A 1 HETATM 44 N N5 A1AN1 . . . C 3 125.387 137.319 137.886 1 174.18 ? N5 A1AN1 1101 A 1 HETATM 45 N N6 A1AN1 . . . C 3 122.631 135.501 136.99 1 176.43 ? N6 A1AN1 1101 A 1 HETATM 46 N N7 A1AN1 . . . C 3 124.134 131.73 136.287 1 178.08 ? N7 A1AN1 1101 A 1 HETATM 47 O O1 A1AN1 . . . C 3 135.387 143.878 134.475 1 175.74 ? O1 A1AN1 1101 A 1 HETATM 48 O O10 A1AN1 . . . C 3 121.855 133.439 137.399 1 173.74 ? O10 A1AN1 1101 A 1 HETATM 49 O O11 A1AN1 . . . C 3 125.166 129.797 136.792 1 178.71 ? O11 A1AN1 1101 A 1 HETATM 50 O O12 A1AN1 . . . C 3 123.994 129.931 139.294 1 177.44 ? O12 A1AN1 1101 A 1 HETATM 51 O O13 A1AN1 . . . C 3 121.478 127.269 137.243 1 175.61 ? O13 A1AN1 1101 A 1 HETATM 52 O O14 A1AN1 . . . C 3 122.429 124.967 136.98 1 176.97 ? O14 A1AN1 1101 A 1 HETATM 53 O O16 A1AN1 . . . C 3 122.267 126.023 139.276 1 179.06 ? O16 A1AN1 1101 A 1 HETATM 54 O O2 A1AN1 . . . C 3 134.606 146.275 129.775 1 178.13 ? O2 A1AN1 1101 A 1 HETATM 55 O O3 A1AN1 . . . C 3 135.498 143.23 131.295 1 176.84 ? O3 A1AN1 1101 A 1 HETATM 56 O O4 A1AN1 . . . C 3 138.288 143.064 131.917 1 179.2 ? O4 A1AN1 1101 A 1 HETATM 57 O O5 A1AN1 . . . C 3 139.798 141.915 133.647 1 180.69 ? O5 A1AN1 1101 A 1 HETATM 58 O O6 A1AN1 . . . C 3 139.711 144.385 133.384 1 180.26 ? O6 A1AN1 1101 A 1 HETATM 59 O O8 A1AN1 . . . C 3 126.59 139.043 138.504 1 172.33 ? O8 A1AN1 1101 A 1 HETATM 60 O O9 A1AN1 . . . C 3 125.261 138.013 140.033 1 173.54 ? O9 A1AN1 1101 A 1 HETATM 61 P P1 A1AN1 . . . C 3 139.721 143.059 132.654 1 189.8 ? P1 A1AN1 1101 A 1 HETATM 62 P P2 A1AN1 . . . C 3 121.611 125.817 137.928 1 181.83 ? P2 A1AN1 1101 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 60 _model_server_stats.query_time_ms 501 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 62 #