data_9BI0 # _model_server_result.job_id 9eZu4mGv9_rhqU3LbfZMAw _model_server_result.datetime_utc '2024-12-27 14:18:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9bi0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 9BI0 # _exptl.entry_id 9BI0 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9BI0 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9BI0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? 60-meric 60 'complete icosahedral assembly' 1 ? monomeric 1 'icosahedral asymmetric unit' 2 ? pentameric 5 'icosahedral pentamer' 3 ? hexameric 6 'icosahedral 23 hexamer' 4 ? monomeric 1 'icosahedral asymmetric unit, std point frame' 5 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B 1 (1-60) A,B 2 1 A,B 3 (1-5) A,B 4 (1,2,6,10,23,24) A,B 5 P # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] P 'transform to point frame' ? ? 1 0.000002 -0.000002 -0.000002 1 0.000002 0.000002 -0.000002 1 -200.1998 -200.20023 -200.20002 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'point symmetry operation' ? ? 0.309017 -0.809018 0.499999 0.809018 0.499999 0.309016 -0.499998 0.309017 0.809018 200.20047 -123.72985 76.46876 3 'point symmetry operation' ? ? -0.809017 -0.5 0.309017 0.500001 -0.30902 0.809015 -0.309015 0.809016 0.500003 400.39975 0.00125 -0.00108 4 'point symmetry operation' ? ? -0.809017 0.500001 -0.309015 -0.5 -0.30902 0.809016 0.309017 0.809015 0.500003 323.92924 200.20113 -123.7308 5 'point symmetry operation' ? ? 0.309017 0.809018 -0.499998 -0.809018 0.499999 0.309017 0.499999 0.309016 0.809018 76.46859 200.20036 -123.73013 6 'point symmetry operation' ? ? -1 0 0.000004 0 -1 -0.000004 0.000004 -0.000004 1 400.39873 400.40133 -0.00004 7 'point symmetry operation' ? ? -0.309019 0.809019 -0.499995 -0.809016 -0.5 -0.309019 -0.5 0.309012 0.809019 200.19859 524.13088 76.47005 8 'point symmetry operation' ? ? 0.809016 0.500003 -0.309015 -0.5 0.309017 -0.809017 -0.30902 0.809015 0.500001 -0.00102 400.40008 0.00056 9 'point symmetry operation' ? ? 0.809018 -0.499998 0.309017 0.499999 0.309017 -0.809018 0.309016 0.809018 0.499999 76.46897 200.20069 -123.73028 10 'point symmetry operation' ? ? -0.309015 -0.809017 0.500001 0.809016 -0.5 -0.30902 0.500003 0.309017 0.809015 323.92962 200.20146 -123.73065 11 'point symmetry operation' ? ? -1 -0.000004 0 -0.000004 1 0.000004 0 0.000004 -1 400.40044 0.00007 400.3992 12 'point symmetry operation' ? ? -0.309021 0.809016 -0.5 0.809015 0.500004 0.309017 0.500001 -0.309015 -0.809017 200.20051 -123.73034 323.92995 13 'point symmetry operation' ? ? 0.809015 0.500001 -0.30902 0.500004 -0.309015 0.809016 0.309017 -0.809017 -0.5 0.00069 -0.00041 400.40028 14 'point symmetry operation' ? ? 0.809019 -0.5 0.309011 -0.499995 -0.309019 0.809019 -0.309019 -0.809016 -0.5 76.47033 200.19931 524.1308 15 'point symmetry operation' ? ? -0.309013 -0.80902 0.499997 -0.809017 0.499996 0.309022 -0.500002 -0.309014 -0.809017 323.93099 200.19961 524.13013 16 'point symmetry operation' ? ? 1 0.000004 -0.000004 0.000004 -1 0 -0.000004 0 -1 -0.00003 400.39966 400.40084 17 'point symmetry operation' ? ? 0.309023 -0.809017 0.499997 -0.809017 -0.500002 -0.309014 0.499997 -0.309014 -0.80902 200.19958 524.13038 323.93123 18 'point symmetry operation' ? ? -0.809014 -0.500005 0.309018 -0.500005 0.309018 -0.809014 0.309018 -0.809014 -0.500005 400.39972 400.40015 400.40023 19 'point symmetry operation' ? ? -0.80902 0.499996 -0.309014 0.499996 0.309022 -0.809017 -0.309014 -0.809017 -0.500002 323.9306 200.19994 524.13028 20 'point symmetry operation' ? ? 0.309011 0.809019 -0.5 0.809019 -0.499995 -0.309019 -0.5 -0.309019 -0.809016 76.46995 200.19964 524.13065 21 'point symmetry operation' ? ? 0 0 1 1 0 0 0 1 0 -0.00022 0.00043 -0.00021 22 'point symmetry operation' ? ? -0.499998 0.309017 0.809018 0.309017 -0.809018 0.499999 0.809018 0.499999 0.309016 76.46851 200.20088 -123.73011 23 'point symmetry operation' ? ? -0.309015 0.809016 0.500003 -0.809017 -0.5 0.309017 0.500001 -0.30902 0.809015 -0.00133 400.40018 0.00097 24 'point symmetry operation' ? ? 0.309017 0.809015 0.500003 -0.809017 0.500001 -0.309015 -0.5 -0.30902 0.809016 -123.73102 323.9297 200.20088 25 'point symmetry operation' ? ? 0.499999 0.309016 0.809018 0.309017 0.809018 -0.499998 -0.809018 0.499999 0.309017 -123.73034 76.46904 200.20015 26 'point symmetry operation' ? ? 0.000004 -0.000004 1 -1 0 0.000004 0 -1 -0.000004 -0.00025 400.39923 400.40105 27 'point symmetry operation' ? ? -0.5 0.309011 0.809019 -0.309019 0.809019 -0.499995 -0.809016 -0.5 -0.309019 76.46987 200.19912 524.13062 28 'point symmetry operation' ? ? -0.309021 0.809015 0.500001 0.809016 0.500004 -0.309015 -0.5 0.309017 -0.809017 0.00038 -0.00051 400.39987 29 'point symmetry operation' ? ? 0.309016 0.809018 0.499999 0.809018 -0.499998 0.309017 0.499999 0.309017 -0.809018 -123.73048 76.46943 200.20048 30 'point symmetry operation' ? ? 0.500003 0.309017 0.809015 -0.309015 -0.809017 0.500001 0.809016 -0.5 -0.30902 -123.73087 323.93008 200.20121 31 'point symmetry operation' ? ? 0 0.000004 -1 -1 -0.000004 0 -0.000004 1 0.000004 400.39895 400.4009 -0.00025 32 'point symmetry operation' ? ? 0.500001 -0.309015 -0.809017 -0.30902 0.809016 -0.5 0.809015 0.500003 0.309017 323.9297 200.20094 -123.73063 33 'point symmetry operation' ? ? 0.309017 -0.809017 -0.5 0.809015 0.500001 -0.30902 0.500003 -0.309015 0.809016 400.40006 0.00115 -0.00067 34 'point symmetry operation' ? ? -0.309019 -0.809016 -0.5 0.809019 -0.5 0.309012 -0.499995 -0.309019 0.809019 524.13059 76.47084 200.19903 35 'point symmetry operation' ? ? -0.500002 -0.309014 -0.809017 -0.309014 -0.80902 0.499997 -0.809017 0.499997 0.309022 524.12991 323.93149 200.19928 36 'point symmetry operation' ? ? -0.000004 0 -1 1 0.000004 -0.000004 0.000004 -1 0 400.40066 0.0005 400.39941 37 'point symmetry operation' ? ? 0.499997 -0.309014 -0.80902 0.309022 -0.809017 0.499997 -0.809017 -0.500002 -0.309014 323.93106 200.20013 524.1301 38 'point symmetry operation' ? ? 0.309018 -0.809014 -0.500005 -0.809014 -0.500005 0.309018 -0.500005 0.309018 -0.809014 400.40003 400.40025 400.39982 39 'point symmetry operation' ? ? -0.309013 -0.809017 -0.500002 -0.80902 0.499996 -0.309014 0.499997 0.309022 -0.809017 524.13006 323.9311 200.19961 40 'point symmetry operation' ? ? -0.5 -0.309019 -0.809016 0.309011 0.809019 -0.5 0.809019 -0.499995 -0.309019 524.13045 76.47045 200.19935 41 'point symmetry operation' ? ? 0 1 0 0 0 1 1 0 0 -0.00043 0.00021 0.00022 42 'point symmetry operation' ? ? 0.809018 0.499999 0.309016 -0.499998 0.309017 0.809018 0.309017 -0.809018 0.499999 -123.73031 76.46897 200.20067 43 'point symmetry operation' ? ? 0.500001 -0.30902 0.809015 -0.309015 0.809016 0.500003 -0.809017 -0.5 0.309017 0.0008 -0.00082 400.39997 44 'point symmetry operation' ? ? -0.5 -0.30902 0.809016 0.309017 0.809015 0.500003 -0.809017 0.500001 -0.309015 200.2007 -123.73052 323.92949 45 'point symmetry operation' ? ? -0.809018 0.499999 0.309017 0.499999 0.309016 0.809018 0.309017 0.809018 -0.499998 200.19995 -123.72988 76.46883 46 'point symmetry operation' ? ? 0 -1 -0.000004 0.000004 -0.000004 1 -1 0 0.000004 400.40087 0.00028 400.39898 47 'point symmetry operation' ? ? -0.809016 -0.5 -0.309019 -0.5 0.309012 0.809019 -0.309019 0.809019 -0.499995 524.13042 76.47038 200.19883 48 'point symmetry operation' ? ? -0.5 0.309017 -0.809017 -0.30902 0.809015 0.500001 0.809016 0.500003 -0.309015 400.39965 0.00084 -0.00077 49 'point symmetry operation' ? ? 0.499999 0.309017 -0.809018 0.309016 0.809018 0.499999 0.809018 -0.499998 0.309017 200.20027 -123.73003 76.46922 50 'point symmetry operation' ? ? 0.809016 -0.5 -0.30902 0.500003 0.309017 0.809015 -0.309015 -0.809017 0.500001 200.20103 -123.73037 323.92987 51 'point symmetry operation' ? ? -0.000004 1 0.000004 0 0.000004 -1 -1 -0.000004 0 -0.00046 400.39945 400.40062 52 'point symmetry operation' ? ? 0.809015 0.500004 0.309017 0.500001 -0.309015 -0.809017 -0.30902 0.809016 -0.5 -123.73085 323.93015 200.20069 53 'point symmetry operation' ? ? 0.500003 -0.309015 0.809016 0.309017 -0.809017 -0.5 0.809015 0.500001 -0.30902 -0.00091 400.40049 0.00087 54 'point symmetry operation' ? ? -0.499995 -0.309019 0.809019 -0.309019 -0.809016 -0.5 0.809019 -0.5 0.309012 200.19878 524.13105 76.47051 55 'point symmetry operation' ? ? -0.809017 0.499997 0.309022 -0.500002 -0.309014 -0.809017 -0.309013 -0.80902 0.499997 200.19906 524.13041 323.93116 56 'point symmetry operation' ? ? 0.000004 -1 0 -0.000004 0 -1 1 0.000004 -0.000004 400.39916 400.40112 0.00018 57 'point symmetry operation' ? ? -0.809017 -0.500002 -0.309013 0.499997 -0.309014 -0.80902 0.309022 -0.809017 0.499997 524.12988 323.93156 200.1998 58 'point symmetry operation' ? ? -0.500005 0.309018 -0.809014 0.309018 -0.809014 -0.500005 -0.809014 -0.500005 0.309018 400.39962 400.40056 400.39992 59 'point symmetry operation' ? ? 0.499997 0.309022 -0.809017 -0.309014 -0.809017 -0.500002 -0.80902 0.499997 -0.309014 200.19939 524.13056 323.93078 60 'point symmetry operation' ? ? 0.809019 -0.499995 -0.309019 -0.5 -0.309019 -0.809016 0.309011 0.809019 -0.5 200.19911 524.1309 76.47012 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O THR 68 A THR 68 1_555 B CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? metalc ? metalc2 A OD1 ASP 71 A ASP 71 1_555 B CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.541 ? metalc ? metalc3 A O ARG 73 A ARG 73 1_555 B CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.645 ? metalc ? metalc4 A OE1 GLU 89 A GLU 89 1_555 B CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? metalc ? metalc5 A OE2 GLU 89 A GLU 89 1_555 B CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? metalc ? metalc6 A OE2 GLU 92 A GLU 92 1_555 B CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 9BI0 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id CA _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 501 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id CA _pdbx_nonpoly_scheme.auth_mon_id CA _pdbx_nonpoly_scheme.pdb_ins_code . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 212.993 _atom_site.Cartn_y 222.195 _atom_site.Cartn_z 319.303 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 30 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 501 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 236 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #