data_9BIK # _model_server_result.job_id Sn3vVMxfaBGcRZhhATGp-Q _model_server_result.datetime_utc '2024-12-21 15:47:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9bik # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 9BIK # _exptl.entry_id 9BIK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.61 _cell.angle_gamma 90 _cell.entry_id 9BIK _cell.length_a 68.657 _cell.length_b 56.589 _cell.length_c 84.979 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9BIK _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 129 n n C1 C2 EDO sing 130 n n C1 H11 EDO sing 131 n n C1 H12 EDO sing 132 n n O1 HO1 EDO sing 133 n n C2 O2 EDO sing 134 n n C2 H21 EDO sing 135 n n C2 H22 EDO sing 136 n n O2 HO2 EDO sing 137 n n # _atom_sites.entry_id 9BIK _atom_sites.fract_transf_matrix[1][1] 0.014565 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002205 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017671 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011902 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EDO A 1 301 348 EDO EDO . D 2 EDO A 1 302 349 EDO EDO . E 2 EDO A 1 303 351 EDO EDO . F 2 EDO A 1 304 352 EDO EDO . G 3 A1APO A 1 305 1 A1APO LIG . H 2 EDO B 1 301 345 EDO EDO . I 2 EDO B 1 302 346 EDO EDO . J 2 EDO B 1 303 347 EDO EDO . K 2 EDO B 1 304 350 EDO EDO . L 2 EDO B 1 305 354 EDO EDO . M 3 A1APO B 1 306 1 A1APO LIG . N 4 HOH A 1 401 109 HOH HOH . N 4 HOH A 2 402 305 HOH HOH . N 4 HOH A 3 403 111 HOH HOH . N 4 HOH A 4 404 101 HOH HOH . N 4 HOH A 5 405 334 HOH HOH . N 4 HOH A 6 406 30 HOH HOH . N 4 HOH A 7 407 257 HOH HOH . N 4 HOH A 8 408 271 HOH HOH . N 4 HOH A 9 409 284 HOH HOH . N 4 HOH A 10 410 107 HOH HOH . N 4 HOH A 11 411 25 HOH HOH . N 4 HOH A 12 412 144 HOH HOH . N 4 HOH A 13 413 219 HOH HOH . N 4 HOH A 14 414 1 HOH HOH . N 4 HOH A 15 415 302 HOH HOH . N 4 HOH A 16 416 32 HOH HOH . N 4 HOH A 17 417 308 HOH HOH . N 4 HOH A 18 418 270 HOH HOH . N 4 HOH A 19 419 160 HOH HOH . N 4 HOH A 20 420 51 HOH HOH . N 4 HOH A 21 421 87 HOH HOH . N 4 HOH A 22 422 162 HOH HOH . N 4 HOH A 23 423 8 HOH HOH . N 4 HOH A 24 424 174 HOH HOH . N 4 HOH A 25 425 256 HOH HOH . N 4 HOH A 26 426 14 HOH HOH . N 4 HOH A 27 427 81 HOH HOH . N 4 HOH A 28 428 90 HOH HOH . N 4 HOH A 29 429 278 HOH HOH . N 4 HOH A 30 430 4 HOH HOH . N 4 HOH A 31 431 260 HOH HOH . N 4 HOH A 32 432 148 HOH HOH . N 4 HOH A 33 433 243 HOH HOH . N 4 HOH A 34 434 47 HOH HOH . N 4 HOH A 35 435 340 HOH HOH . N 4 HOH A 36 436 15 HOH HOH . N 4 HOH A 37 437 10 HOH HOH . N 4 HOH A 38 438 82 HOH HOH . N 4 HOH A 39 439 186 HOH HOH . N 4 HOH A 40 440 49 HOH HOH . N 4 HOH A 41 441 143 HOH HOH . N 4 HOH A 42 442 195 HOH HOH . N 4 HOH A 43 443 210 HOH HOH . N 4 HOH A 44 444 159 HOH HOH . N 4 HOH A 45 445 85 HOH HOH . N 4 HOH A 46 446 202 HOH HOH . N 4 HOH A 47 447 245 HOH HOH . N 4 HOH A 48 448 39 HOH HOH . N 4 HOH A 49 449 13 HOH HOH . N 4 HOH A 50 450 145 HOH HOH . N 4 HOH A 51 451 273 HOH HOH . N 4 HOH A 52 452 7 HOH HOH . N 4 HOH A 53 453 91 HOH HOH . N 4 HOH A 54 454 93 HOH HOH . N 4 HOH A 55 455 292 HOH HOH . N 4 HOH A 56 456 3 HOH HOH . N 4 HOH A 57 457 37 HOH HOH . N 4 HOH A 58 458 342 HOH HOH . N 4 HOH A 59 459 311 HOH HOH . N 4 HOH A 60 460 242 HOH HOH . N 4 HOH A 61 461 341 HOH HOH . N 4 HOH A 62 462 251 HOH HOH . N 4 HOH A 63 463 274 HOH HOH . N 4 HOH A 64 464 216 HOH HOH . N 4 HOH A 65 465 205 HOH HOH . N 4 HOH A 66 466 183 HOH HOH . N 4 HOH A 67 467 63 HOH HOH . N 4 HOH A 68 468 325 HOH HOH . N 4 HOH A 69 469 40 HOH HOH . N 4 HOH A 70 470 146 HOH HOH . N 4 HOH A 71 471 48 HOH HOH . N 4 HOH A 72 472 147 HOH HOH . N 4 HOH A 73 473 212 HOH HOH . N 4 HOH A 74 474 252 HOH HOH . N 4 HOH A 75 475 45 HOH HOH . N 4 HOH A 76 476 76 HOH HOH . N 4 HOH A 77 477 41 HOH HOH . N 4 HOH A 78 478 303 HOH HOH . N 4 HOH A 79 479 161 HOH HOH . N 4 HOH A 80 480 5 HOH HOH . N 4 HOH A 81 481 265 HOH HOH . N 4 HOH A 82 482 217 HOH HOH . N 4 HOH A 83 483 207 HOH HOH . N 4 HOH A 84 484 138 HOH HOH . N 4 HOH A 85 485 77 HOH HOH . N 4 HOH A 86 486 73 HOH HOH . N 4 HOH A 87 487 282 HOH HOH . N 4 HOH A 88 488 229 HOH HOH . N 4 HOH A 89 489 75 HOH HOH . N 4 HOH A 90 490 224 HOH HOH . N 4 HOH A 91 491 306 HOH HOH . N 4 HOH A 92 492 172 HOH HOH . N 4 HOH A 93 493 312 HOH HOH . N 4 HOH A 94 494 62 HOH HOH . N 4 HOH A 95 495 158 HOH HOH . N 4 HOH A 96 496 288 HOH HOH . N 4 HOH A 97 497 26 HOH HOH . N 4 HOH A 98 498 71 HOH HOH . N 4 HOH A 99 499 113 HOH HOH . N 4 HOH A 100 500 164 HOH HOH . N 4 HOH A 101 501 173 HOH HOH . N 4 HOH A 102 502 247 HOH HOH . N 4 HOH A 103 503 318 HOH HOH . N 4 HOH A 104 504 149 HOH HOH . N 4 HOH A 105 505 137 HOH HOH . N 4 HOH A 106 506 92 HOH HOH . N 4 HOH A 107 507 151 HOH HOH . N 4 HOH A 108 508 153 HOH HOH . N 4 HOH A 109 509 272 HOH HOH . N 4 HOH A 110 510 328 HOH HOH . N 4 HOH A 111 511 89 HOH HOH . N 4 HOH A 112 512 176 HOH HOH . N 4 HOH A 113 513 335 HOH HOH . N 4 HOH A 114 514 141 HOH HOH . N 4 HOH A 115 515 177 HOH HOH . N 4 HOH A 116 516 140 HOH HOH . N 4 HOH A 117 517 275 HOH HOH . N 4 HOH A 118 518 343 HOH HOH . N 4 HOH A 119 519 316 HOH HOH . N 4 HOH A 120 520 102 HOH HOH . N 4 HOH A 121 521 227 HOH HOH . N 4 HOH A 122 522 155 HOH HOH . N 4 HOH A 123 523 175 HOH HOH . N 4 HOH A 124 524 319 HOH HOH . N 4 HOH A 125 525 344 HOH HOH . N 4 HOH A 126 526 142 HOH HOH . N 4 HOH A 127 527 281 HOH HOH . N 4 HOH A 128 528 108 HOH HOH . N 4 HOH A 129 529 163 HOH HOH . N 4 HOH A 130 530 150 HOH HOH . N 4 HOH A 131 531 266 HOH HOH . N 4 HOH A 132 532 298 HOH HOH . O 4 HOH B 1 401 19 HOH HOH . O 4 HOH B 2 402 238 HOH HOH . O 4 HOH B 3 403 135 HOH HOH . O 4 HOH B 4 404 226 HOH HOH . O 4 HOH B 5 405 258 HOH HOH . O 4 HOH B 6 406 323 HOH HOH . O 4 HOH B 7 407 130 HOH HOH . O 4 HOH B 8 408 94 HOH HOH . O 4 HOH B 9 409 20 HOH HOH . O 4 HOH B 10 410 116 HOH HOH . O 4 HOH B 11 411 129 HOH HOH . O 4 HOH B 12 412 322 HOH HOH . O 4 HOH B 13 413 208 HOH HOH . O 4 HOH B 14 414 317 HOH HOH . O 4 HOH B 15 415 304 HOH HOH . O 4 HOH B 16 416 119 HOH HOH . O 4 HOH B 17 417 29 HOH HOH . O 4 HOH B 18 418 79 HOH HOH . O 4 HOH B 19 419 120 HOH HOH . O 4 HOH B 20 420 171 HOH HOH . O 4 HOH B 21 421 31 HOH HOH . O 4 HOH B 22 422 44 HOH HOH . O 4 HOH B 23 423 276 HOH HOH . O 4 HOH B 24 424 338 HOH HOH . O 4 HOH B 25 425 201 HOH HOH . O 4 HOH B 26 426 192 HOH HOH . O 4 HOH B 27 427 180 HOH HOH . O 4 HOH B 28 428 235 HOH HOH . O 4 HOH B 29 429 327 HOH HOH . O 4 HOH B 30 430 5 HOH HOH . O 4 HOH B 31 431 189 HOH HOH . O 4 HOH B 32 432 213 HOH HOH . O 4 HOH B 33 433 324 HOH HOH . O 4 HOH B 34 434 253 HOH HOH . O 4 HOH B 35 435 198 HOH HOH . O 4 HOH B 36 436 88 HOH HOH . O 4 HOH B 37 437 222 HOH HOH . O 4 HOH B 38 438 69 HOH HOH . O 4 HOH B 39 439 53 HOH HOH . O 4 HOH B 40 440 46 HOH HOH . O 4 HOH B 41 441 55 HOH HOH . O 4 HOH B 42 442 264 HOH HOH . O 4 HOH B 43 443 2 HOH HOH . O 4 HOH B 44 444 95 HOH HOH . O 4 HOH B 45 445 279 HOH HOH . O 4 HOH B 46 446 211 HOH HOH . O 4 HOH B 47 447 80 HOH HOH . O 4 HOH B 48 448 70 HOH HOH . O 4 HOH B 49 449 182 HOH HOH . O 4 HOH B 50 450 11 HOH HOH . O 4 HOH B 51 451 2 HOH HOH . O 4 HOH B 52 452 187 HOH HOH . O 4 HOH B 53 453 240 HOH HOH . O 4 HOH B 54 454 188 HOH HOH . O 4 HOH B 55 455 133 HOH HOH . O 4 HOH B 56 456 22 HOH HOH . O 4 HOH B 57 457 17 HOH HOH . O 4 HOH B 58 458 6 HOH HOH . O 4 HOH B 59 459 184 HOH HOH . O 4 HOH B 60 460 196 HOH HOH . O 4 HOH B 61 461 67 HOH HOH . O 4 HOH B 62 462 228 HOH HOH . O 4 HOH B 63 463 223 HOH HOH . O 4 HOH B 64 464 167 HOH HOH . O 4 HOH B 65 465 185 HOH HOH . O 4 HOH B 66 466 121 HOH HOH . O 4 HOH B 67 467 64 HOH HOH . O 4 HOH B 68 468 248 HOH HOH . O 4 HOH B 69 469 74 HOH HOH . O 4 HOH B 70 470 241 HOH HOH . O 4 HOH B 71 471 12 HOH HOH . O 4 HOH B 72 472 168 HOH HOH . O 4 HOH B 73 473 165 HOH HOH . O 4 HOH B 74 474 1 HOH HOH . O 4 HOH B 75 475 200 HOH HOH . O 4 HOH B 76 476 231 HOH HOH . O 4 HOH B 77 477 18 HOH HOH . O 4 HOH B 78 478 78 HOH HOH . O 4 HOH B 79 479 54 HOH HOH . O 4 HOH B 80 480 209 HOH HOH . O 4 HOH B 81 481 33 HOH HOH . O 4 HOH B 82 482 52 HOH HOH . O 4 HOH B 83 483 99 HOH HOH . O 4 HOH B 84 484 197 HOH HOH . O 4 HOH B 85 485 83 HOH HOH . O 4 HOH B 86 486 38 HOH HOH . O 4 HOH B 87 487 131 HOH HOH . O 4 HOH B 88 488 66 HOH HOH . O 4 HOH B 89 489 262 HOH HOH . O 4 HOH B 90 490 28 HOH HOH . O 4 HOH B 91 491 9 HOH HOH . O 4 HOH B 92 492 199 HOH HOH . O 4 HOH B 93 493 21 HOH HOH . O 4 HOH B 94 494 61 HOH HOH . O 4 HOH B 95 495 280 HOH HOH . O 4 HOH B 96 496 289 HOH HOH . O 4 HOH B 97 497 220 HOH HOH . O 4 HOH B 98 498 68 HOH HOH . O 4 HOH B 99 499 254 HOH HOH . O 4 HOH B 100 500 283 HOH HOH . O 4 HOH B 101 501 309 HOH HOH . O 4 HOH B 102 502 34 HOH HOH . O 4 HOH B 103 503 57 HOH HOH . O 4 HOH B 104 504 221 HOH HOH . O 4 HOH B 105 505 300 HOH HOH . O 4 HOH B 106 506 3 HOH HOH . O 4 HOH B 107 507 203 HOH HOH . O 4 HOH B 108 508 43 HOH HOH . O 4 HOH B 109 509 169 HOH HOH . O 4 HOH B 110 510 215 HOH HOH . O 4 HOH B 111 511 23 HOH HOH . O 4 HOH B 112 512 193 HOH HOH . O 4 HOH B 113 513 65 HOH HOH . O 4 HOH B 114 514 326 HOH HOH . O 4 HOH B 115 515 232 HOH HOH . O 4 HOH B 116 516 191 HOH HOH . O 4 HOH B 117 517 104 HOH HOH . O 4 HOH B 118 518 178 HOH HOH . O 4 HOH B 119 519 50 HOH HOH . O 4 HOH B 120 520 36 HOH HOH . O 4 HOH B 121 521 123 HOH HOH . O 4 HOH B 122 522 97 HOH HOH . O 4 HOH B 123 523 250 HOH HOH . O 4 HOH B 124 524 112 HOH HOH . O 4 HOH B 125 525 214 HOH HOH . O 4 HOH B 126 526 115 HOH HOH . O 4 HOH B 127 527 218 HOH HOH . O 4 HOH B 128 528 128 HOH HOH . O 4 HOH B 129 529 190 HOH HOH . O 4 HOH B 130 530 194 HOH HOH . O 4 HOH B 131 531 124 HOH HOH . O 4 HOH B 132 532 42 HOH HOH . O 4 HOH B 133 533 225 HOH HOH . O 4 HOH B 134 534 58 HOH HOH . O 4 HOH B 135 535 134 HOH HOH . O 4 HOH B 136 536 170 HOH HOH . O 4 HOH B 137 537 86 HOH HOH . O 4 HOH B 138 538 314 HOH HOH . O 4 HOH B 139 539 166 HOH HOH . O 4 HOH B 140 540 267 HOH HOH . O 4 HOH B 141 541 4 HOH HOH . O 4 HOH B 142 542 84 HOH HOH . O 4 HOH B 143 543 126 HOH HOH . O 4 HOH B 144 544 125 HOH HOH . O 4 HOH B 145 545 98 HOH HOH . O 4 HOH B 146 546 320 HOH HOH . O 4 HOH B 147 547 330 HOH HOH . O 4 HOH B 148 548 293 HOH HOH . O 4 HOH B 149 549 72 HOH HOH . O 4 HOH B 150 550 96 HOH HOH . O 4 HOH B 151 551 59 HOH HOH . O 4 HOH B 152 552 259 HOH HOH . O 4 HOH B 153 553 110 HOH HOH . O 4 HOH B 154 554 277 HOH HOH . O 4 HOH B 155 555 103 HOH HOH . O 4 HOH B 156 556 230 HOH HOH . O 4 HOH B 157 557 332 HOH HOH . O 4 HOH B 158 558 294 HOH HOH . O 4 HOH B 159 559 132 HOH HOH . O 4 HOH B 160 560 331 HOH HOH . O 4 HOH B 161 561 127 HOH HOH . O 4 HOH B 162 562 287 HOH HOH . O 4 HOH B 163 563 333 HOH HOH . O 4 HOH B 164 564 263 HOH HOH . O 4 HOH B 165 565 236 HOH HOH . O 4 HOH B 166 566 117 HOH HOH . O 4 HOH B 167 567 136 HOH HOH . O 4 HOH B 168 568 139 HOH HOH . O 4 HOH B 169 569 118 HOH HOH . O 4 HOH B 170 570 296 HOH HOH . O 4 HOH B 171 571 301 HOH HOH . O 4 HOH B 172 572 321 HOH HOH . O 4 HOH B 173 573 313 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 2 20.084 19.118 53.135 1 42.49 ? C1 EDO 302 A 1 HETATM 2 O O1 EDO . . . D 2 20.286 18.985 54.548 1 63.61 ? O1 EDO 302 A 1 HETATM 3 C C2 EDO . . . D 2 21.3 19.792 52.511 1 38.1 ? C2 EDO 302 A 1 HETATM 4 O O2 EDO . . . D 2 21.115 19.88 51.09 1 44.36 ? O2 EDO 302 A 1 HETATM 5 H H11 EDO . . . D 2 19.189 19.714 52.942 1 51.07 ? H11 EDO 302 A 1 HETATM 6 H H12 EDO . . . D 2 19.934 18.134 52.686 1 51.07 ? H12 EDO 302 A 1 HETATM 7 H HO1 EDO . . . D 2 19.533 18.521 54.938 1 76.42 ? HO1 EDO 302 A 1 HETATM 8 H H21 EDO . . . D 2 22.201 19.216 52.734 1 45.8 ? H21 EDO 302 A 1 HETATM 9 H H22 EDO . . . D 2 21.429 20.792 52.931 1 45.8 ? H22 EDO 302 A 1 HETATM 10 H HO2 EDO . . . D 2 21.875 20.325 50.692 1 53.32 ? HO2 EDO 302 A 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 10 #