data_9BIM # _model_server_result.job_id Q8N7lXDa5RBFBlrzbGhIkg _model_server_result.datetime_utc '2024-11-07 04:36:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9bim # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":701}' # _entry.id 9BIM # _exptl.entry_id 9BIM _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 414.538 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "(2S,2'S)-2,2'-biphenyl-4,4'-diylbis(2-hydroxy-4,4-dimethylmorpholin-4-ium)" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9BIM _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9BIM _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C24 H34 N2 O4 2' _chem_comp.formula_weight 414.538 _chem_comp.id HC6 _chem_comp.mon_nstd_flag . _chem_comp.name "(2S,2'S)-2,2'-biphenyl-4,4'-diylbis(2-hydroxy-4,4-dimethylmorpholin-4-ium)" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAC NAA HC6 sing 129 n n CAC CAD HC6 sing 130 n n CAC HAC HC6 sing 131 n n CAC HACA HC6 sing 132 n n NAA CBA HC6 sing 133 n n NAA CBB HC6 sing 134 n n NAA CAB HC6 sing 135 n n CBA HBA HC6 sing 136 n n CBA HBAA HC6 sing 137 n n CBA HBAB HC6 sing 138 n n CBB HBB HC6 sing 139 n n CBB HBBA HC6 sing 140 n n CBB HBBB HC6 sing 141 n n CAB CAF HC6 sing 142 n n CAB HAB HC6 sing 143 n n CAB HABA HC6 sing 144 n n CAF OAE HC6 sing 145 n n CAF HAF HC6 sing 146 n n CAF HAFA HC6 sing 147 n n OAE CAD HC6 sing 148 n n CAD OBC HC6 sing 149 n n CAD CAG HC6 sing 150 n n CAG CAL HC6 doub 151 n y CAG CAH HC6 sing 152 n y CAL CAK HC6 sing 153 n y CAL HAL HC6 sing 154 n n CAK CAJ HC6 doub 155 n y CAK HAK HC6 sing 156 n n CAH CAI HC6 doub 157 n y CAH HAH HC6 sing 158 n n CAI CAJ HC6 sing 159 n y CAI HAI HC6 sing 160 n n CAJ CAM HC6 sing 161 n y CAM CAR HC6 doub 162 n y CAM CAN HC6 sing 163 n y CAR CAQ HC6 sing 164 n y CAR HAR HC6 sing 165 n n CAQ CAP HC6 doub 166 n y CAQ HAQ HC6 sing 167 n n CAN CAO HC6 doub 168 n y CAN HAN HC6 sing 169 n n CAO CAP HC6 sing 170 n y CAO HAO HC6 sing 171 n n CAP CAS HC6 sing 172 n n OBD CAS HC6 sing 173 n n CAS CAX HC6 sing 174 n n CAS OAT HC6 sing 175 n n CAX NAW HC6 sing 176 n n CAX HAX HC6 sing 177 n n CAX HAXA HC6 sing 178 n n OAT CAU HC6 sing 179 n n CAU CAV HC6 sing 180 n n CAU HAU HC6 sing 181 n n CAU HAUA HC6 sing 182 n n CAV NAW HC6 sing 183 n n CAV HAV HC6 sing 184 n n CAV HAVA HC6 sing 185 n n NAW CAZ HC6 sing 186 n n NAW CAY HC6 sing 187 n n CAZ HAZ HC6 sing 188 n n CAZ HAZA HC6 sing 189 n n CAZ HAZB HC6 sing 190 n n CAY HAY HC6 sing 191 n n CAY HAYA HC6 sing 192 n n CAY HAYB HC6 sing 193 n n OBC H33 HC6 sing 194 n n OBD H34 HC6 sing 195 n n # _atom_sites.entry_id 9BIM _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id HC6 _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 701 _pdbx_nonpoly_scheme.auth_seq_num 601 _pdbx_nonpoly_scheme.pdb_mon_id HC6 _pdbx_nonpoly_scheme.auth_mon_id HC6 _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAC HC6 . . . B 2 97.381 107.639 97.871 1 43.1 ? CAC HC6 701 A 1 HETATM 2 N NAA HC6 . . . B 2 98.072 107.304 99.121 1 43.35 ? NAA HC6 701 A 1 HETATM 3 C CBA HC6 . . . B 2 97.136 107.223 100.242 1 43.64 ? CBA HC6 701 A 1 HETATM 4 C CBB HC6 . . . B 2 98.679 105.988 98.944 1 43.94 ? CBB HC6 701 A 1 HETATM 5 C CAB HC6 . . . B 2 99.141 108.247 99.433 1 42.85 ? CAB HC6 701 A 1 HETATM 6 C CAF HC6 . . . B 2 98.543 109.63 99.499 1 42.82 ? CAF HC6 701 A 1 HETATM 7 O OAE HC6 . . . B 2 98.132 109.938 98.183 1 43.13 ? OAE HC6 701 A 1 HETATM 8 C CAD HC6 . . . B 2 97.072 109.123 97.695 1 43.03 ? CAD HC6 701 A 1 HETATM 9 O OBC HC6 . . . B 2 95.848 109.454 98.342 1 43.73 ? OBC HC6 701 A 1 HETATM 10 C CAG HC6 . . . B 2 96.936 109.476 96.251 1 42.45 ? CAG HC6 701 A 1 HETATM 11 C CAL HC6 . . . B 2 96.22 110.608 95.91 1 42.58 ? CAL HC6 701 A 1 HETATM 12 C CAK HC6 . . . B 2 96.079 110.964 94.58 1 42.73 ? CAK HC6 701 A 1 HETATM 13 C CAH HC6 . . . B 2 97.521 108.698 95.266 1 41.9 ? CAH HC6 701 A 1 HETATM 14 C CAI HC6 . . . B 2 97.382 109.053 93.941 1 42.19 ? CAI HC6 701 A 1 HETATM 15 C CAJ HC6 . . . B 2 96.668 110.184 93.605 1 43.13 ? CAJ HC6 701 A 1 HETATM 16 C CAM HC6 . . . B 2 96.531 110.535 92.18 1 44.57 ? CAM HC6 701 A 1 HETATM 17 C CAR HC6 . . . B 2 97.263 109.812 91.256 1 45.07 ? CAR HC6 701 A 1 HETATM 18 C CAQ HC6 . . . B 2 97.151 110.114 89.911 1 46.05 ? CAQ HC6 701 A 1 HETATM 19 C CAN HC6 . . . B 2 95.683 111.555 91.777 1 45.68 ? CAN HC6 701 A 1 HETATM 20 C CAO HC6 . . . B 2 95.571 111.855 90.426 1 46.6 ? CAO HC6 701 A 1 HETATM 21 C CAP HC6 . . . B 2 96.308 111.133 89.497 1 48.05 ? CAP HC6 701 A 1 HETATM 22 C CAS HC6 . . . B 2 96.206 111.427 88.037 1 51.04 ? CAS HC6 701 A 1 HETATM 23 O OBD HC6 . . . B 2 97.406 112.054 87.577 1 51.96 ? OBD HC6 701 A 1 HETATM 24 C CAX HC6 . . . B 2 96.011 110.049 87.394 1 51.5 ? CAX HC6 701 A 1 HETATM 25 O OAT HC6 . . . B 2 95.079 112.279 87.842 1 52.86 ? OAT HC6 701 A 1 HETATM 26 C CAU HC6 . . . B 2 94.62 112.331 86.497 1 52.51 ? CAU HC6 701 A 1 HETATM 27 C CAV HC6 . . . B 2 94.184 110.934 86.08 1 51.98 ? CAV HC6 701 A 1 HETATM 28 N NAW HC6 . . . B 2 95.338 110.029 86.089 1 51.52 ? NAW HC6 701 A 1 HETATM 29 C CAZ HC6 . . . B 2 96.282 110.383 85.024 1 51.37 ? CAZ HC6 701 A 1 HETATM 30 C CAY HC6 . . . B 2 94.867 108.663 85.84 1 50.55 ? CAY HC6 701 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 30 #