data_9BIR # _model_server_result.job_id XCCcJdtyfjGDY0t8XnrdfA _model_server_result.datetime_utc '2024-10-10 10:19:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9bir # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":801}' # _entry.id 9BIR # _exptl.entry_id 9BIR _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 363.388 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Cefadroxil _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9BIR _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 9BIR _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 211 A CYS 211 1_555 A SG CYS 216 A CYS 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 B SG CYS 25 B CYS 22 1_555 B SG CYS 99 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? # _chem_comp.formula 'C16 H17 N3 O5 S' _chem_comp.formula_weight 363.388 _chem_comp.id A1APP _chem_comp.mon_nstd_flag . _chem_comp.name Cefadroxil _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '(1S,2R,3R,6R,7R)-7-{[(2R)-2-amino-2-(4-hydroxyphenyl)acetyl]amino}-3-methyl-8-oxo-5-thia-1-azabicyclo[4.2.0]octane-2-carboxylic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O5X C16X A1APP sing 1 n n C16X C14X A1APP doub 2 n y C16X C15X A1APP sing 3 n y C14X C12X A1APP sing 4 n y C15X C13X A1APP doub 5 n y C12X C11X A1APP doub 6 n y N3X C10X A1APP sing 7 n n C13X C11X A1APP sing 8 n y C11X C10X A1APP sing 9 n n C10X C9X A1APP sing 10 n n O4X C9X A1APP doub 11 n n C9X N2X A1APP sing 12 n n S1X C7X A1APP sing 13 n n S1X C4X A1APP sing 14 n n N2X C8X A1APP sing 15 n n C7X C3X A1APP sing 16 n n C4X C8X A1APP sing 17 n n C4X N1X A1APP sing 18 n n C8X C5X A1APP sing 19 n n C3X C6X A1APP sing 20 n n C3X C2X A1APP doub 21 n n N1X C5X A1APP sing 22 n n N1X C2X A1APP sing 23 n n C5X O3X A1APP doub 24 n n C2X C1X A1APP sing 25 n n C1X O1X A1APP doub 26 n n C1X O2X A1APP sing 27 n n C4X H1X A1APP sing 28 n n C6X H4X A1APP sing 29 n n C6X H3X A1APP sing 30 n n C6X H2X A1APP sing 31 n n C7X H5X A1APP sing 32 n n C7X H6X A1APP sing 33 n n C8X H7X A1APP sing 34 n n N2X H8X A1APP sing 35 n n N3X H10X A1APP sing 36 n n N3X H11X A1APP sing 37 n n O2X H3 A1APP sing 38 n n O5X H16X A1APP sing 39 n n C10X H9X A1APP sing 40 n n C12X H12X A1APP sing 41 n n C13X H13X A1APP sing 42 n n C14X H14X A1APP sing 43 n n C15X H15X A1APP sing 44 n n # _atom_sites.entry_id 9BIR _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id C _pdbx_nonpoly_scheme.entity_id 3 _pdbx_nonpoly_scheme.mon_id A1APP _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 801 _pdbx_nonpoly_scheme.auth_seq_num 801 _pdbx_nonpoly_scheme.pdb_mon_id A1APP _pdbx_nonpoly_scheme.auth_mon_id CEF _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1X A1APP . . . C 3 147.315 146.505 155.791 1 59.25 ? C1X A1APP 801 A 1 HETATM 2 C C2X A1APP . . . C 3 146.81 146.441 154.375 1 62.83 ? C2X A1APP 801 A 1 HETATM 3 C C3X A1APP . . . C 3 146.903 145.384 153.566 1 56.28 ? C3X A1APP 801 A 1 HETATM 4 C C4X A1APP . . . C 3 145.724 147.802 152.529 1 59.68 ? C4X A1APP 801 A 1 HETATM 5 C C5X A1APP . . . C 3 146.427 148.952 154.129 1 64.8 ? C5X A1APP 801 A 1 HETATM 6 C C6X A1APP . . . C 3 146.84 143.964 154.052 1 47.62 ? C6X A1APP 801 A 1 HETATM 7 C C7X A1APP . . . C 3 147.043 145.514 152.07 1 55.42 ? C7X A1APP 801 A 1 HETATM 8 C C8X A1APP . . . C 3 145.727 149.335 152.814 1 57.88 ? C8X A1APP 801 A 1 HETATM 9 C C9X A1APP . . . C 3 145.836 151.013 151.053 1 57.15 ? C9X A1APP 801 A 1 HETATM 10 N N1X A1APP . . . C 3 146.196 147.611 153.905 1 65.93 ? N1X A1APP 801 A 1 HETATM 11 N N2X A1APP . . . C 3 146.463 150.202 151.912 1 54.82 ? N2X A1APP 801 A 1 HETATM 12 N N3X A1APP . . . C 3 145.84 152.478 149.122 1 47.1 ? N3X A1APP 801 A 1 HETATM 13 O O1X A1APP . . . C 3 148.398 145.91 156.019 1 51.85 ? O1X A1APP 801 A 1 HETATM 14 O O2X A1APP . . . C 3 146.634 147.133 156.629 1 58.07 ? O2X A1APP 801 A 1 HETATM 15 O O3X A1APP . . . C 3 146.977 149.546 155.04 1 59.26 ? O3X A1APP 801 A 1 HETATM 16 O O4X A1APP . . . C 3 144.614 151.113 150.987 1 56.86 ? O4X A1APP 801 A 1 HETATM 17 O O5X A1APP . . . C 3 150.74 148.691 147.635 1 57.44 ? O5X A1APP 801 A 1 HETATM 18 S S1X A1APP . . . C 3 146.933 147.177 151.354 1 71.27 ? S1X A1APP 801 A 1 HETATM 19 C C10X A1APP . . . C 3 146.742 151.845 150.127 1 54.24 ? C10X A1APP 801 A 1 HETATM 20 C C11X A1APP . . . C 3 147.81 150.997 149.468 1 52.69 ? C11X A1APP 801 A 1 HETATM 21 C C12X A1APP . . . C 3 147.556 149.682 149.105 1 56.15 ? C12X A1APP 801 A 1 HETATM 22 C C13X A1APP . . . C 3 149.066 151.523 149.203 1 48.85 ? C13X A1APP 801 A 1 HETATM 23 C C14X A1APP . . . C 3 148.527 148.908 148.494 1 57.75 ? C14X A1APP 801 A 1 HETATM 24 C C15X A1APP . . . C 3 150.046 150.762 148.591 1 52.99 ? C15X A1APP 801 A 1 HETATM 25 C C16X A1APP . . . C 3 149.778 149.449 148.235 1 62.79 ? C16X A1APP 801 A 1 HETATM 26 H H1X A1APP . . . C 3 144.755 147.364 152.311 1 53.06 ? H1X A1APP 801 A 1 HETATM 27 H H4X A1APP . . . C 3 146.718 143.254 153.235 1 41.07 ? H4X A1APP 801 A 1 HETATM 28 H H3X A1APP . . . C 3 145.995 143.825 154.724 1 46.53 ? H3X A1APP 801 A 1 HETATM 29 H H2X A1APP . . . C 3 147.744 143.682 154.591 1 43.54 ? H2X A1APP 801 A 1 HETATM 30 H H5X A1APP . . . C 3 148.031 145.171 151.766 1 51.07 ? H5X A1APP 801 A 1 HETATM 31 H H6X A1APP . . . C 3 146.313 144.891 151.556 1 49.59 ? H6X A1APP 801 A 1 HETATM 32 H H7X A1APP . . . C 3 144.72 149.713 152.98 1 52.36 ? H7X A1APP 801 A 1 HETATM 33 H H8X A1APP . . . C 3 147.475 150.15 151.977 1 55.59 ? H8X A1APP 801 A 1 HETATM 34 H H10X A1APP . . . C 3 146.29 152.534 148.214 1 47.76 ? H10X A1APP 801 A 1 HETATM 35 H H11X A1APP . . . C 3 145.588 153.419 149.407 1 44.84 ? H11X A1APP 801 A 1 HETATM 36 H H16X A1APP . . . C 3 151.063 148.008 148.279 1 50.87 ? H16X A1APP 801 A 1 HETATM 37 H H9X A1APP . . . C 3 147.199 152.635 150.721 1 52.9 ? H9X A1APP 801 A 1 HETATM 38 H H12X A1APP . . . C 3 146.584 149.226 149.286 1 52.59 ? H12X A1APP 801 A 1 HETATM 39 H H13X A1APP . . . C 3 149.303 152.551 149.473 1 50.72 ? H13X A1APP 801 A 1 HETATM 40 H H14X A1APP . . . C 3 148.311 147.877 148.218 1 51.72 ? H14X A1APP 801 A 1 HETATM 41 H H15X A1APP . . . C 3 151.018 151.214 148.398 1 52.06 ? H15X A1APP 801 A 1 # _model_server_stats.io_time_ms 111 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 41 #