data_9BJ1
#
_model_server_result.job_id            MJapPyPmbVL3CVYmVb7ZXg 
_model_server_result.datetime_utc      '2024-12-22 03:25:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9bj1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":306}' 
#
_entry.id    9BJ1 
#
_exptl.entry_id    9BJ1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              78.133 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'DIMETHYL SULFOXIDE' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         86.67 
_cell.angle_beta          85.37 
_cell.angle_gamma         66.7 
_cell.entry_id            9BJ1 
_cell.length_a            51.483 
_cell.length_b            56.998 
_cell.length_c            61.527 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9BJ1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    'P 1' 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 H N N 
? 4 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O LEU 38 A LEU 23 1_555 J NA NA . A NA 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? 
metalc ? metalc2 A O GLY 44 A GLY 29 1_555 J NA NA . A NA 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? 
#
_chem_comp.formula           'C2 H6 O S' 
_chem_comp.formula_weight    78.133 
_chem_comp.id                DMS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'DIMETHYL SULFOXIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O DMS doub 202 n n 
S C1 DMS sing 203 n n 
S C2 DMS sing 204 n n 
C1 H11 DMS sing 205 n n 
C1 H12 DMS sing 206 n n 
C1 H13 DMS sing 207 n n 
C2 H21 DMS sing 208 n n 
C2 H22 DMS sing 209 n n 
C2 H23 DMS sing 210 n n 
#
_atom_sites.entry_id                     9BJ1 
_atom_sites.fract_transf_matrix[1][1]    0.019424 
_atom_sites.fract_transf_matrix[1][2]    -0.008365 
_atom_sites.fract_transf_matrix[1][3]    -0.001335 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019102 
_atom_sites.fract_transf_matrix[2][3]    -0.000546 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016313 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MES A 1 301 231 MES MES . 
D 3 EDO A 1 302 235 EDO EDO . 
E 3 EDO A 1 303 237 EDO EDO . 
F 3 EDO A 1 304 239 EDO EDO . 
G 4 DMS A 1 305 241 DMS DMS . 
H 4 DMS A 1 306 243 DMS DMS . 
I 5 A1APR A 1 307 1 A1APR 209 . 
J 6 NA A 1 308 1 NA NA . 
K 2 MES B 1 301 230 MES MES . 
L 2 MES B 1 302 232 MES MES . 
M 7 PEG B 1 303 234 PEG PEG . 
N 3 EDO B 1 304 238 EDO EDO . 
O 3 EDO B 1 305 240 EDO EDO . 
P 4 DMS B 1 306 242 DMS DMS . 
Q 8 A1APQ B 1 307 1 A1APQ 011 . 
R 9 HOH A 1 401 101 HOH HOH . 
R 9 HOH A 2 402 46 HOH HOH . 
R 9 HOH A 3 403 33 HOH HOH . 
R 9 HOH A 4 404 65 HOH HOH . 
R 9 HOH A 5 405 99 HOH HOH . 
R 9 HOH A 6 406 114 HOH HOH . 
R 9 HOH A 7 407 127 HOH HOH . 
R 9 HOH A 8 408 60 HOH HOH . 
R 9 HOH A 9 409 31 HOH HOH . 
R 9 HOH A 10 410 76 HOH HOH . 
R 9 HOH A 11 411 10 HOH HOH . 
R 9 HOH A 12 412 48 HOH HOH . 
R 9 HOH A 13 413 159 HOH HOH . 
R 9 HOH A 14 414 119 HOH HOH . 
R 9 HOH A 15 415 201 HOH HOH . 
R 9 HOH A 16 416 21 HOH HOH . 
R 9 HOH A 17 417 155 HOH HOH . 
R 9 HOH A 18 418 90 HOH HOH . 
R 9 HOH A 19 419 43 HOH HOH . 
R 9 HOH A 20 420 209 HOH HOH . 
R 9 HOH A 21 421 37 HOH HOH . 
R 9 HOH A 22 422 22 HOH HOH . 
R 9 HOH A 23 423 126 HOH HOH . 
R 9 HOH A 24 424 13 HOH HOH . 
R 9 HOH A 25 425 55 HOH HOH . 
R 9 HOH A 26 426 83 HOH HOH . 
R 9 HOH A 27 427 150 HOH HOH . 
R 9 HOH A 28 428 144 HOH HOH . 
R 9 HOH A 29 429 62 HOH HOH . 
R 9 HOH A 30 430 111 HOH HOH . 
R 9 HOH A 31 431 20 HOH HOH . 
R 9 HOH A 32 432 25 HOH HOH . 
R 9 HOH A 33 433 115 HOH HOH . 
R 9 HOH A 34 434 51 HOH HOH . 
R 9 HOH A 35 435 89 HOH HOH . 
R 9 HOH A 36 436 4 HOH HOH . 
R 9 HOH A 37 437 86 HOH HOH . 
R 9 HOH A 38 438 3 HOH HOH . 
R 9 HOH A 39 439 16 HOH HOH . 
R 9 HOH A 40 440 70 HOH HOH . 
R 9 HOH A 41 441 52 HOH HOH . 
R 9 HOH A 42 442 67 HOH HOH . 
R 9 HOH A 43 443 49 HOH HOH . 
R 9 HOH A 44 444 27 HOH HOH . 
R 9 HOH A 45 445 154 HOH HOH . 
R 9 HOH A 46 446 81 HOH HOH . 
R 9 HOH A 47 447 72 HOH HOH . 
R 9 HOH A 48 448 92 HOH HOH . 
R 9 HOH A 49 449 121 HOH HOH . 
R 9 HOH A 50 450 113 HOH HOH . 
R 9 HOH A 51 451 157 HOH HOH . 
R 9 HOH A 52 452 165 HOH HOH . 
R 9 HOH A 53 453 122 HOH HOH . 
R 9 HOH A 54 454 182 HOH HOH . 
R 9 HOH A 55 455 6 HOH HOH . 
R 9 HOH A 56 456 210 HOH HOH . 
R 9 HOH A 57 457 164 HOH HOH . 
R 9 HOH A 58 458 131 HOH HOH . 
R 9 HOH A 59 459 35 HOH HOH . 
R 9 HOH A 60 460 64 HOH HOH . 
R 9 HOH A 61 461 137 HOH HOH . 
R 9 HOH A 62 462 61 HOH HOH . 
R 9 HOH A 63 463 135 HOH HOH . 
R 9 HOH A 64 464 32 HOH HOH . 
R 9 HOH A 65 465 34 HOH HOH . 
R 9 HOH A 66 466 50 HOH HOH . 
R 9 HOH A 67 467 132 HOH HOH . 
R 9 HOH A 68 468 141 HOH HOH . 
R 9 HOH A 69 469 112 HOH HOH . 
R 9 HOH A 70 470 18 HOH HOH . 
R 9 HOH A 71 471 199 HOH HOH . 
R 9 HOH A 72 472 222 HOH HOH . 
R 9 HOH A 73 473 163 HOH HOH . 
R 9 HOH A 74 474 194 HOH HOH . 
R 9 HOH A 75 475 5 HOH HOH . 
R 9 HOH A 76 476 190 HOH HOH . 
R 9 HOH A 77 477 38 HOH HOH . 
R 9 HOH A 78 478 227 HOH HOH . 
R 9 HOH A 79 479 226 HOH HOH . 
R 9 HOH A 80 480 84 HOH HOH . 
R 9 HOH A 81 481 188 HOH HOH . 
R 9 HOH A 82 482 1 HOH HOH . 
R 9 HOH A 83 483 180 HOH HOH . 
R 9 HOH A 84 484 218 HOH HOH . 
S 9 HOH B 1 401 100 HOH HOH . 
S 9 HOH B 2 402 1 HOH HOH . 
S 9 HOH B 3 403 93 HOH HOH . 
S 9 HOH B 4 404 184 HOH HOH . 
S 9 HOH B 5 405 54 HOH HOH . 
S 9 HOH B 6 406 133 HOH HOH . 
S 9 HOH B 7 407 15 HOH HOH . 
S 9 HOH B 8 408 30 HOH HOH . 
S 9 HOH B 9 409 75 HOH HOH . 
S 9 HOH B 10 410 28 HOH HOH . 
S 9 HOH B 11 411 79 HOH HOH . 
S 9 HOH B 12 412 130 HOH HOH . 
S 9 HOH B 13 413 42 HOH HOH . 
S 9 HOH B 14 414 103 HOH HOH . 
S 9 HOH B 15 415 102 HOH HOH . 
S 9 HOH B 16 416 123 HOH HOH . 
S 9 HOH B 17 417 47 HOH HOH . 
S 9 HOH B 18 418 143 HOH HOH . 
S 9 HOH B 19 419 153 HOH HOH . 
S 9 HOH B 20 420 116 HOH HOH . 
S 9 HOH B 21 421 191 HOH HOH . 
S 9 HOH B 22 422 215 HOH HOH . 
S 9 HOH B 23 423 156 HOH HOH . 
S 9 HOH B 24 424 170 HOH HOH . 
S 9 HOH B 25 425 138 HOH HOH . 
S 9 HOH B 26 426 110 HOH HOH . 
S 9 HOH B 27 427 17 HOH HOH . 
S 9 HOH B 28 428 78 HOH HOH . 
S 9 HOH B 29 429 171 HOH HOH . 
S 9 HOH B 30 430 53 HOH HOH . 
S 9 HOH B 31 431 107 HOH HOH . 
S 9 HOH B 32 432 148 HOH HOH . 
S 9 HOH B 33 433 9 HOH HOH . 
S 9 HOH B 34 434 212 HOH HOH . 
S 9 HOH B 35 435 136 HOH HOH . 
S 9 HOH B 36 436 39 HOH HOH . 
S 9 HOH B 37 437 202 HOH HOH . 
S 9 HOH B 38 438 11 HOH HOH . 
S 9 HOH B 39 439 19 HOH HOH . 
S 9 HOH B 40 440 105 HOH HOH . 
S 9 HOH B 41 441 12 HOH HOH . 
S 9 HOH B 42 442 41 HOH HOH . 
S 9 HOH B 43 443 8 HOH HOH . 
S 9 HOH B 44 444 106 HOH HOH . 
S 9 HOH B 45 445 24 HOH HOH . 
S 9 HOH B 46 446 80 HOH HOH . 
S 9 HOH B 47 447 23 HOH HOH . 
S 9 HOH B 48 448 63 HOH HOH . 
S 9 HOH B 49 449 2 HOH HOH . 
S 9 HOH B 50 450 104 HOH HOH . 
S 9 HOH B 51 451 14 HOH HOH . 
S 9 HOH B 52 452 29 HOH HOH . 
S 9 HOH B 53 453 71 HOH HOH . 
S 9 HOH B 54 454 59 HOH HOH . 
S 9 HOH B 55 455 91 HOH HOH . 
S 9 HOH B 56 456 26 HOH HOH . 
S 9 HOH B 57 457 169 HOH HOH . 
S 9 HOH B 58 458 147 HOH HOH . 
S 9 HOH B 59 459 204 HOH HOH . 
S 9 HOH B 60 460 197 HOH HOH . 
S 9 HOH B 61 461 36 HOH HOH . 
S 9 HOH B 62 462 82 HOH HOH . 
S 9 HOH B 63 463 69 HOH HOH . 
S 9 HOH B 64 464 151 HOH HOH . 
S 9 HOH B 65 465 152 HOH HOH . 
S 9 HOH B 66 466 160 HOH HOH . 
S 9 HOH B 67 467 108 HOH HOH . 
S 9 HOH B 68 468 128 HOH HOH . 
S 9 HOH B 69 469 172 HOH HOH . 
S 9 HOH B 70 470 196 HOH HOH . 
S 9 HOH B 71 471 139 HOH HOH . 
S 9 HOH B 72 472 118 HOH HOH . 
S 9 HOH B 73 473 158 HOH HOH . 
S 9 HOH B 74 474 40 HOH HOH . 
S 9 HOH B 75 475 185 HOH HOH . 
S 9 HOH B 76 476 198 HOH HOH . 
S 9 HOH B 77 477 125 HOH HOH . 
S 9 HOH B 78 478 109 HOH HOH . 
S 9 HOH B 79 479 206 HOH HOH . 
S 9 HOH B 80 480 68 HOH HOH . 
S 9 HOH B 81 481 45 HOH HOH . 
S 9 HOH B 82 482 183 HOH HOH . 
S 9 HOH B 83 483 44 HOH HOH . 
S 9 HOH B 84 484 124 HOH HOH . 
S 9 HOH B 85 485 176 HOH HOH . 
S 9 HOH B 86 486 74 HOH HOH . 
S 9 HOH B 87 487 7 HOH HOH . 
S 9 HOH B 88 488 203 HOH HOH . 
S 9 HOH B 89 489 162 HOH HOH . 
S 9 HOH B 90 490 56 HOH HOH . 
S 9 HOH B 91 491 129 HOH HOH . 
S 9 HOH B 92 492 58 HOH HOH . 
S 9 HOH B 93 493 224 HOH HOH . 
S 9 HOH B 94 494 179 HOH HOH . 
S 9 HOH B 95 495 120 HOH HOH . 
S 9 HOH B 96 496 77 HOH HOH . 
S 9 HOH B 97 497 85 HOH HOH . 
S 9 HOH B 98 498 96 HOH HOH . 
S 9 HOH B 99 499 140 HOH HOH . 
S 9 HOH B 100 500 213 HOH HOH . 
S 9 HOH B 101 501 175 HOH HOH . 
S 9 HOH B 102 502 173 HOH HOH . 
S 9 HOH B 103 503 178 HOH HOH . 
S 9 HOH B 104 504 177 HOH HOH . 
S 9 HOH B 105 505 174 HOH HOH . 
S 9 HOH B 106 506 168 HOH HOH . 
S 9 HOH B 107 507 94 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S DMS . . . H 4 -10.352 11.487 12.495 1 91.8 ? S DMS 306 A 1 
HETATM 2 O O DMS . . . H 4 -9.718 10.221 12.016 1 81.47 ? O DMS 306 A 1 
HETATM 3 C C1 DMS . . . H 4 -12.084 11.162 12.928 1 81.85 ? C1 DMS 306 A 1 
HETATM 4 C C2 DMS . . . H 4 -9.701 11.917 14.135 1 61.04 ? C2 DMS 306 A 1 
HETATM 5 H H11 DMS . . . H 4 -12.13 10.37 13.63 1 98.25 ? H11 DMS 306 A 1 
HETATM 6 H H12 DMS . . . H 4 -12.622 10.893 12.057 1 98.25 ? H12 DMS 306 A 1 
HETATM 7 H H13 DMS . . . H 4 -12.512 12.033 13.352 1 98.25 ? H13 DMS 306 A 1 
HETATM 8 H H21 DMS . . . H 4 -8.664 12.121 14.061 1 73.28 ? H21 DMS 306 A 1 
HETATM 9 H H22 DMS . . . H 4 -10.203 12.774 14.501 1 73.28 ? H22 DMS 306 A 1 
HETATM 10 H H23 DMS . . . H 4 -9.854 11.107 14.799 1 73.28 ? H23 DMS 306 A 1 
#
_model_server_stats.io_time_ms              106 
_model_server_stats.parse_time_ms           61 
_model_server_stats.create_model_time_ms    35 
_model_server_stats.query_time_ms           1495 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           10 
#