data_9BJA # _model_server_result.job_id Q2RfodFz4xCmWk9k3uEFcA _model_server_result.datetime_utc '2024-11-25 07:23:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9bja # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 9BJA # _exptl.entry_id 9BJA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 660.035 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'INOSITOL HEXAKISPHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.78 _cell.angle_gamma 90 _cell.entry_id 9BJA _cell.length_a 44.051 _cell.length_b 89.171 _cell.length_c 67.597 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9BJA _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C6 H18 O24 P6' _chem_comp.formula_weight 660.035 _chem_comp.id IHP _chem_comp.mon_nstd_flag . _chem_comp.name 'INOSITOL HEXAKISPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'MYO-INOSITOL HEXAKISPHOSPHATE;INOSITOL 1,2,3,4,5,6-HEXAKISPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 IHP sing 152 n n C1 C6 IHP sing 153 n n C1 O11 IHP sing 154 n n C1 H1 IHP sing 155 n n C2 C3 IHP sing 156 n n C2 O12 IHP sing 157 n n C2 H2 IHP sing 158 n n C3 C4 IHP sing 159 n n C3 O13 IHP sing 160 n n C3 H3 IHP sing 161 n n C4 C5 IHP sing 162 n n C4 O14 IHP sing 163 n n C4 H4 IHP sing 164 n n C5 C6 IHP sing 165 n n C5 O15 IHP sing 166 n n C5 H5 IHP sing 167 n n C6 O16 IHP sing 168 n n C6 H6 IHP sing 169 n n O11 P1 IHP sing 170 n n P1 O21 IHP doub 171 n n P1 O31 IHP sing 172 n n P1 O41 IHP sing 173 n n O31 H31 IHP sing 174 n n O41 H41 IHP sing 175 n n O12 P2 IHP sing 176 n n P2 O22 IHP doub 177 n n P2 O32 IHP sing 178 n n P2 O42 IHP sing 179 n n O32 H32 IHP sing 180 n n O42 H42 IHP sing 181 n n O13 P3 IHP sing 182 n n P3 O23 IHP doub 183 n n P3 O33 IHP sing 184 n n P3 O43 IHP sing 185 n n O33 H33 IHP sing 186 n n O43 H43 IHP sing 187 n n O14 P4 IHP sing 188 n n P4 O24 IHP doub 189 n n P4 O34 IHP sing 190 n n P4 O44 IHP sing 191 n n O34 H34 IHP sing 192 n n O44 H44 IHP sing 193 n n O15 P5 IHP sing 194 n n P5 O25 IHP doub 195 n n P5 O35 IHP sing 196 n n P5 O45 IHP sing 197 n n O35 H35 IHP sing 198 n n O45 H45 IHP sing 199 n n O16 P6 IHP sing 200 n n P6 O26 IHP doub 201 n n P6 O36 IHP sing 202 n n P6 O46 IHP sing 203 n n O36 H36 IHP sing 204 n n O46 H46 IHP sing 205 n n # _atom_sites.entry_id 9BJA _atom_sites.fract_transf_matrix[1][1] 0.022701 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005567 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011214 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015232 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 IHP A 1 301 301 IHP IHP . D 2 IHP B 1 301 301 IHP IHP . E 3 HOH A 1 401 51 HOH HOH . E 3 HOH A 2 402 173 HOH HOH . E 3 HOH A 3 403 81 HOH HOH . E 3 HOH A 4 404 36 HOH HOH . E 3 HOH A 5 405 168 HOH HOH . E 3 HOH A 6 406 208 HOH HOH . E 3 HOH A 7 407 21 HOH HOH . E 3 HOH A 8 408 20 HOH HOH . E 3 HOH A 9 409 157 HOH HOH . E 3 HOH A 10 410 134 HOH HOH . E 3 HOH A 11 411 89 HOH HOH . E 3 HOH A 12 412 151 HOH HOH . E 3 HOH A 13 413 11 HOH HOH . E 3 HOH A 14 414 152 HOH HOH . E 3 HOH A 15 415 9 HOH HOH . E 3 HOH A 16 416 115 HOH HOH . E 3 HOH A 17 417 203 HOH HOH . E 3 HOH A 18 418 41 HOH HOH . E 3 HOH A 19 419 13 HOH HOH . E 3 HOH A 20 420 216 HOH HOH . E 3 HOH A 21 421 26 HOH HOH . E 3 HOH A 22 422 137 HOH HOH . E 3 HOH A 23 423 226 HOH HOH . E 3 HOH A 24 424 78 HOH HOH . E 3 HOH A 25 425 10 HOH HOH . E 3 HOH A 26 426 163 HOH HOH . E 3 HOH A 27 427 144 HOH HOH . E 3 HOH A 28 428 200 HOH HOH . E 3 HOH A 29 429 25 HOH HOH . E 3 HOH A 30 430 48 HOH HOH . E 3 HOH A 31 431 103 HOH HOH . E 3 HOH A 32 432 22 HOH HOH . E 3 HOH A 33 433 46 HOH HOH . E 3 HOH A 34 434 56 HOH HOH . E 3 HOH A 35 435 119 HOH HOH . E 3 HOH A 36 436 202 HOH HOH . E 3 HOH A 37 437 5 HOH HOH . E 3 HOH A 38 438 49 HOH HOH . E 3 HOH A 39 439 2 HOH HOH . E 3 HOH A 40 440 106 HOH HOH . E 3 HOH A 41 441 39 HOH HOH . E 3 HOH A 42 442 112 HOH HOH . E 3 HOH A 43 443 3 HOH HOH . E 3 HOH A 44 444 31 HOH HOH . E 3 HOH A 45 445 29 HOH HOH . E 3 HOH A 46 446 17 HOH HOH . E 3 HOH A 47 447 75 HOH HOH . E 3 HOH A 48 448 15 HOH HOH . E 3 HOH A 49 449 53 HOH HOH . E 3 HOH A 50 450 52 HOH HOH . E 3 HOH A 51 451 132 HOH HOH . E 3 HOH A 52 452 64 HOH HOH . E 3 HOH A 53 453 35 HOH HOH . E 3 HOH A 54 454 192 HOH HOH . E 3 HOH A 55 455 190 HOH HOH . E 3 HOH A 56 456 19 HOH HOH . E 3 HOH A 57 457 30 HOH HOH . E 3 HOH A 58 458 207 HOH HOH . E 3 HOH A 59 459 110 HOH HOH . E 3 HOH A 60 460 171 HOH HOH . E 3 HOH A 61 461 145 HOH HOH . E 3 HOH A 62 462 38 HOH HOH . E 3 HOH A 63 463 220 HOH HOH . E 3 HOH A 64 464 187 HOH HOH . E 3 HOH A 65 465 131 HOH HOH . E 3 HOH A 66 466 102 HOH HOH . E 3 HOH A 67 467 100 HOH HOH . E 3 HOH A 68 468 186 HOH HOH . E 3 HOH A 69 469 181 HOH HOH . E 3 HOH A 70 470 155 HOH HOH . E 3 HOH A 71 471 95 HOH HOH . E 3 HOH A 72 472 72 HOH HOH . E 3 HOH A 73 473 156 HOH HOH . E 3 HOH A 74 474 104 HOH HOH . E 3 HOH A 75 475 184 HOH HOH . E 3 HOH A 76 476 107 HOH HOH . E 3 HOH A 77 477 113 HOH HOH . E 3 HOH A 78 478 153 HOH HOH . E 3 HOH A 79 479 108 HOH HOH . E 3 HOH A 80 480 176 HOH HOH . E 3 HOH A 81 481 197 HOH HOH . E 3 HOH A 82 482 182 HOH HOH . E 3 HOH A 83 483 74 HOH HOH . E 3 HOH A 84 484 225 HOH HOH . E 3 HOH A 85 485 223 HOH HOH . E 3 HOH A 86 486 195 HOH HOH . E 3 HOH A 87 487 84 HOH HOH . E 3 HOH A 88 488 143 HOH HOH . E 3 HOH A 89 489 174 HOH HOH . E 3 HOH A 90 490 165 HOH HOH . E 3 HOH A 91 491 205 HOH HOH . E 3 HOH A 92 492 199 HOH HOH . E 3 HOH A 93 493 167 HOH HOH . E 3 HOH A 94 494 76 HOH HOH . E 3 HOH A 95 495 164 HOH HOH . E 3 HOH A 96 496 83 HOH HOH . E 3 HOH A 97 497 183 HOH HOH . E 3 HOH A 98 498 178 HOH HOH . E 3 HOH A 99 499 101 HOH HOH . E 3 HOH A 100 500 114 HOH HOH . E 3 HOH A 101 501 117 HOH HOH . F 3 HOH B 1 401 86 HOH HOH . F 3 HOH B 2 402 118 HOH HOH . F 3 HOH B 3 403 175 HOH HOH . F 3 HOH B 4 404 172 HOH HOH . F 3 HOH B 5 405 50 HOH HOH . F 3 HOH B 6 406 141 HOH HOH . F 3 HOH B 7 407 18 HOH HOH . F 3 HOH B 8 408 136 HOH HOH . F 3 HOH B 9 409 158 HOH HOH . F 3 HOH B 10 410 33 HOH HOH . F 3 HOH B 11 411 218 HOH HOH . F 3 HOH B 12 412 6 HOH HOH . F 3 HOH B 13 413 67 HOH HOH . F 3 HOH B 14 414 212 HOH HOH . F 3 HOH B 15 415 222 HOH HOH . F 3 HOH B 16 416 133 HOH HOH . F 3 HOH B 17 417 24 HOH HOH . F 3 HOH B 18 418 42 HOH HOH . F 3 HOH B 19 419 27 HOH HOH . F 3 HOH B 20 420 1 HOH HOH . F 3 HOH B 21 421 194 HOH HOH . F 3 HOH B 22 422 105 HOH HOH . F 3 HOH B 23 423 125 HOH HOH . F 3 HOH B 24 424 60 HOH HOH . F 3 HOH B 25 425 61 HOH HOH . F 3 HOH B 26 426 37 HOH HOH . F 3 HOH B 27 427 138 HOH HOH . F 3 HOH B 28 428 129 HOH HOH . F 3 HOH B 29 429 213 HOH HOH . F 3 HOH B 30 430 4 HOH HOH . F 3 HOH B 31 431 44 HOH HOH . F 3 HOH B 32 432 180 HOH HOH . F 3 HOH B 33 433 154 HOH HOH . F 3 HOH B 34 434 12 HOH HOH . F 3 HOH B 35 435 34 HOH HOH . F 3 HOH B 36 436 14 HOH HOH . F 3 HOH B 37 437 121 HOH HOH . F 3 HOH B 38 438 63 HOH HOH . F 3 HOH B 39 439 139 HOH HOH . F 3 HOH B 40 440 85 HOH HOH . F 3 HOH B 41 441 28 HOH HOH . F 3 HOH B 42 442 54 HOH HOH . F 3 HOH B 43 443 59 HOH HOH . F 3 HOH B 44 444 90 HOH HOH . F 3 HOH B 45 445 142 HOH HOH . F 3 HOH B 46 446 91 HOH HOH . F 3 HOH B 47 447 66 HOH HOH . F 3 HOH B 48 448 55 HOH HOH . F 3 HOH B 49 449 45 HOH HOH . F 3 HOH B 50 450 68 HOH HOH . F 3 HOH B 51 451 160 HOH HOH . F 3 HOH B 52 452 43 HOH HOH . F 3 HOH B 53 453 109 HOH HOH . F 3 HOH B 54 454 196 HOH HOH . F 3 HOH B 55 455 57 HOH HOH . F 3 HOH B 56 456 127 HOH HOH . F 3 HOH B 57 457 97 HOH HOH . F 3 HOH B 58 458 161 HOH HOH . F 3 HOH B 59 459 219 HOH HOH . F 3 HOH B 60 460 210 HOH HOH . F 3 HOH B 61 461 96 HOH HOH . F 3 HOH B 62 462 87 HOH HOH . F 3 HOH B 63 463 211 HOH HOH . F 3 HOH B 64 464 122 HOH HOH . F 3 HOH B 65 465 98 HOH HOH . F 3 HOH B 66 466 124 HOH HOH . F 3 HOH B 67 467 32 HOH HOH . F 3 HOH B 68 468 88 HOH HOH . F 3 HOH B 69 469 209 HOH HOH . F 3 HOH B 70 470 120 HOH HOH . F 3 HOH B 71 471 94 HOH HOH . F 3 HOH B 72 472 166 HOH HOH . F 3 HOH B 73 473 224 HOH HOH . F 3 HOH B 74 474 99 HOH HOH . F 3 HOH B 75 475 217 HOH HOH . F 3 HOH B 76 476 147 HOH HOH . F 3 HOH B 77 477 149 HOH HOH . F 3 HOH B 78 478 62 HOH HOH . F 3 HOH B 79 479 169 HOH HOH . F 3 HOH B 80 480 116 HOH HOH . F 3 HOH B 81 481 47 HOH HOH . F 3 HOH B 82 482 69 HOH HOH . F 3 HOH B 83 483 191 HOH HOH . F 3 HOH B 84 484 162 HOH HOH . F 3 HOH B 85 485 79 HOH HOH . F 3 HOH B 86 486 130 HOH HOH . F 3 HOH B 87 487 77 HOH HOH . F 3 HOH B 88 488 193 HOH HOH . F 3 HOH B 89 489 123 HOH HOH . F 3 HOH B 90 490 215 HOH HOH . F 3 HOH B 91 491 58 HOH HOH . F 3 HOH B 92 492 206 HOH HOH . F 3 HOH B 93 493 135 HOH HOH . F 3 HOH B 94 494 204 HOH HOH . F 3 HOH B 95 495 148 HOH HOH . F 3 HOH B 96 496 65 HOH HOH . F 3 HOH B 97 497 126 HOH HOH . F 3 HOH B 98 498 82 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 IHP . . . D 2 18.794 21.419 11.572 1 29.21 ? C1 IHP 301 B 1 HETATM 2 C C2 IHP . . . D 2 19.399 21.516 12.977 1 29.73 ? C2 IHP 301 B 1 HETATM 3 C C3 IHP . . . D 2 20.641 20.665 13.171 1 29.51 ? C3 IHP 301 B 1 HETATM 4 C C4 IHP . . . D 2 21.691 21.161 12.126 1 28.56 ? C4 IHP 301 B 1 HETATM 5 C C5 IHP . . . D 2 21.153 21.258 10.709 1 27.85 ? C5 IHP 301 B 1 HETATM 6 C C6 IHP . . . D 2 19.838 22 10.612 1 28.17 ? C6 IHP 301 B 1 HETATM 7 O O11 IHP . . . D 2 17.63 22.071 11.427 1 29.9 ? O11 IHP 301 B 1 HETATM 8 P P1 IHP . . . D 2 16.174 21.367 11.486 1 30.36 ? P1 IHP 301 B 1 HETATM 9 O O21 IHP . . . D 2 15.896 20.608 10.216 1 29.24 ? O21 IHP 301 B 1 HETATM 10 O O31 IHP . . . D 2 16.088 20.384 12.656 1 30.08 ? O31 IHP 301 B 1 HETATM 11 O O41 IHP . . . D 2 15.091 22.407 11.686 1 31.77 ? O41 IHP 301 B 1 HETATM 12 O O12 IHP . . . D 2 19.716 22.82 13.314 1 30.7 ? O12 IHP 301 B 1 HETATM 13 P P2 IHP . . . D 2 18.977 23.556 14.564 1 31.46 ? P2 IHP 301 B 1 HETATM 14 O O22 IHP . . . D 2 18.082 22.625 15.332 1 31.48 ? O22 IHP 301 B 1 HETATM 15 O O32 IHP . . . D 2 19.947 24.261 15.477 1 31.46 ? O32 IHP 301 B 1 HETATM 16 O O42 IHP . . . D 2 18.086 24.623 13.901 1 31.28 ? O42 IHP 301 B 1 HETATM 17 O O13 IHP . . . D 2 21.061 20.684 14.414 1 29.66 ? O13 IHP 301 B 1 HETATM 18 P P3 IHP . . . D 2 20.976 19.441 15.442 1 30.55 ? P3 IHP 301 B 1 HETATM 19 O O23 IHP . . . D 2 19.642 18.713 15.391 1 30.67 ? O23 IHP 301 B 1 HETATM 20 O O33 IHP . . . D 2 21.201 19.908 16.874 1 31.12 ? O33 IHP 301 B 1 HETATM 21 O O43 IHP . . . D 2 22.056 18.421 15.082 1 30.62 ? O43 IHP 301 B 1 HETATM 22 O O14 IHP . . . D 2 22.763 20.305 12.088 1 27.78 ? O14 IHP 301 B 1 HETATM 23 P P4 IHP . . . D 2 24.141 20.607 12.844 1 27.25 ? P4 IHP 301 B 1 HETATM 24 O O24 IHP . . . D 2 24.194 22.068 13.208 1 26.61 ? O24 IHP 301 B 1 HETATM 25 O O34 IHP . . . D 2 25.348 20.17 12.016 1 27.03 ? O34 IHP 301 B 1 HETATM 26 O O44 IHP . . . D 2 24.241 19.805 14.145 1 26.91 ? O44 IHP 301 B 1 HETATM 27 O O15 IHP . . . D 2 22.046 21.859 9.89 1 27.19 ? O15 IHP 301 B 1 HETATM 28 P P5 IHP . . . D 2 22.783 21.099 8.708 1 26.57 ? P5 IHP 301 B 1 HETATM 29 O O25 IHP . . . D 2 22.267 21.521 7.367 1 25.77 ? O25 IHP 301 B 1 HETATM 30 O O35 IHP . . . D 2 24.262 21.432 8.833 1 26.36 ? O35 IHP 301 B 1 HETATM 31 O O45 IHP . . . D 2 22.677 19.58 8.822 1 26.03 ? O45 IHP 301 B 1 HETATM 32 O O16 IHP . . . D 2 19.372 21.915 9.318 1 27.75 ? O16 IHP 301 B 1 HETATM 33 P P6 IHP . . . D 2 19.284 23.151 8.305 1 28.06 ? P6 IHP 301 B 1 HETATM 34 O O26 IHP . . . D 2 18.527 22.84 7.048 1 27.66 ? O26 IHP 301 B 1 HETATM 35 O O36 IHP . . . D 2 20.678 23.644 7.933 1 28.35 ? O36 IHP 301 B 1 HETATM 36 O O46 IHP . . . D 2 18.596 24.295 9.039 1 28.14 ? O46 IHP 301 B 1 # _model_server_stats.io_time_ms 80 _model_server_stats.parse_time_ms 34 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 36 #