data_9BJU # _model_server_result.job_id EvpzyrSmJ9qOBhlmqcBLzQ _model_server_result.datetime_utc '2025-01-11 14:36:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9bju # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":202}' # _entry.id 9BJU # _exptl.entry_id 9BJU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 106.12 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DI(HYDROXYETHYL)ETHER _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9BJU _cell.length_a 93.297 _cell.length_b 93.297 _cell.length_c 362.757 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9BJU _symmetry.cell_setting ? _symmetry.Int_Tables_number 91 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 PISA tetrameric 4 author_and_software_defined_assembly 3 PISA tetrameric 4 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,P,Q,R,S,T,BA,CA,DA,PA 1 1 D,E,F,O,U,EA,FA,GA,OA 2 1 G,H,I,N,V,W,X,HA,IA,JA,NA 3 1 J,K,L,M,Y,Z,AA,KA,LA,MA 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id R _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C C PHE 39 C PHE 76 1_555 C N CSX 40 C CSX 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 ? covale ? covale2 C C CSX 40 C CSX 77 1_555 C N ASN 41 C ASN 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale3 L C PHE 39 L PHE 76 1_555 L N CSX 40 L CSX 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? covale ? covale4 L C CSX 40 L CSX 77 1_555 L N ASN 41 L ASN 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale5 M C ACE 1 W ACE 1 1_555 M N TBG 2 W TBG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? covale ? covale6 M C TBG 2 W TBG 2 1_555 M N HYP 3 W HYP 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? covale ? covale7 M C HYP 3 W HYP 3 1_555 M N A1AQ4 4 W A1AQ4 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? covale ? covale8 M C A1AQ4 4 W A1AQ4 4 1_555 M N NH2 5 W NH2 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.352 ? covale ? covale9 N C ACE 1 X ACE 1 1_555 N N TBG 2 X TBG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.363 ? covale ? covale10 N C TBG 2 X TBG 2 1_555 N N HYP 3 X HYP 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.354 ? covale ? covale11 N C HYP 3 X HYP 3 1_555 N N A1AQ4 4 X A1AQ4 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.355 ? covale ? covale12 N C A1AQ4 4 X A1AQ4 4 1_555 N N NH2 5 X NH2 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale13 O C ACE 1 Y ACE 1 1_555 O N TBG 2 Y TBG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.363 ? covale ? covale14 O C TBG 2 Y TBG 2 1_555 O N HYP 3 Y HYP 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.362 ? covale ? covale15 O C HYP 3 Y HYP 3 1_555 O N A1AQ4 4 Y A1AQ4 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.368 ? covale ? covale16 O C A1AQ4 4 Y A1AQ4 4 1_555 O N NH2 5 Y NH2 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? covale ? covale17 P C ACE 1 Z ACE 1 1_555 P N TBG 2 Z TBG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.354 ? covale ? covale18 P C TBG 2 Z TBG 2 1_555 P N HYP 3 Z HYP 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.367 ? covale ? covale19 P C HYP 3 Z HYP 3 1_555 P N A1AQ4 4 Z A1AQ4 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.362 ? covale ? covale20 P C A1AQ4 4 Z A1AQ4 4 1_555 P N NH2 5 Z NH2 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? # _chem_comp.formula 'C4 H10 O3' _chem_comp.formula_weight 106.12 _chem_comp.id PEG _chem_comp.mon_nstd_flag . _chem_comp.name DI(HYDROXYETHYL)ETHER _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PEG sing 335 n n C1 C2 PEG sing 336 n n C1 H11 PEG sing 337 n n C1 H12 PEG sing 338 n n O1 HO1 PEG sing 339 n n C2 O2 PEG sing 340 n n C2 H21 PEG sing 341 n n C2 H22 PEG sing 342 n n O2 C3 PEG sing 343 n n C3 C4 PEG sing 344 n n C3 H31 PEG sing 345 n n C3 H32 PEG sing 346 n n C4 O4 PEG sing 347 n n C4 H41 PEG sing 348 n n C4 H42 PEG sing 349 n n O4 HO4 PEG sing 350 n n # _atom_sites.entry_id 9BJU _atom_sites.fract_transf_matrix[1][1] 0.010718 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010718 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002757 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code Q 6 TFA B 1 201 209 TFA TFA . R 7 PEG B 1 202 210 PEG PEG . S 8 EDO C 1 301 201 EDO EDO . T 9 ACT C 1 302 205 ACT ACT . U 9 ACT F 1 301 204 ACT ACT . V 9 ACT H 1 201 203 ACT ACT . W 10 DMS H 1 202 208 DMS DMS . X 10 DMS I 1 301 207 DMS DMS . Y 8 EDO K 1 201 202 EDO EDO . Z 6 TFA K 1 202 211 TFA TFA . AA 10 DMS L 1 301 206 DMS DMS . BA 11 HOH A 1 201 95 HOH HOH . BA 11 HOH A 2 202 19 HOH HOH . BA 11 HOH A 3 203 70 HOH HOH . BA 11 HOH A 4 204 4 HOH HOH . BA 11 HOH A 5 205 89 HOH HOH . BA 11 HOH A 6 206 69 HOH HOH . BA 11 HOH A 7 207 32 HOH HOH . BA 11 HOH A 8 208 59 HOH HOH . BA 11 HOH A 9 209 47 HOH HOH . BA 11 HOH A 10 210 64 HOH HOH . BA 11 HOH A 11 211 31 HOH HOH . BA 11 HOH A 12 212 61 HOH HOH . BA 11 HOH A 13 213 25 HOH HOH . BA 11 HOH A 14 214 48 HOH HOH . BA 11 HOH A 15 215 65 HOH HOH . BA 11 HOH A 16 216 109 HOH HOH . BA 11 HOH A 17 217 57 HOH HOH . CA 11 HOH B 1 301 37 HOH HOH . CA 11 HOH B 2 302 27 HOH HOH . CA 11 HOH B 3 303 63 HOH HOH . DA 11 HOH C 1 401 6 HOH HOH . DA 11 HOH C 2 402 124 HOH HOH . DA 11 HOH C 3 403 77 HOH HOH . DA 11 HOH C 4 404 105 HOH HOH . DA 11 HOH C 5 405 76 HOH HOH . DA 11 HOH C 6 406 39 HOH HOH . DA 11 HOH C 7 407 28 HOH HOH . DA 11 HOH C 8 408 98 HOH HOH . DA 11 HOH C 9 409 17 HOH HOH . DA 11 HOH C 10 410 44 HOH HOH . DA 11 HOH C 11 411 119 HOH HOH . DA 11 HOH C 12 412 14 HOH HOH . DA 11 HOH C 13 413 106 HOH HOH . DA 11 HOH C 14 414 121 HOH HOH . DA 11 HOH C 15 415 94 HOH HOH . EA 11 HOH D 1 201 115 HOH HOH . EA 11 HOH D 2 202 72 HOH HOH . EA 11 HOH D 3 203 91 HOH HOH . EA 11 HOH D 4 204 29 HOH HOH . FA 11 HOH E 1 201 42 HOH HOH . FA 11 HOH E 2 202 34 HOH HOH . FA 11 HOH E 3 203 88 HOH HOH . FA 11 HOH E 4 204 87 HOH HOH . FA 11 HOH E 5 205 83 HOH HOH . FA 11 HOH E 6 206 111 HOH HOH . GA 11 HOH F 1 401 30 HOH HOH . GA 11 HOH F 2 402 114 HOH HOH . GA 11 HOH F 3 403 93 HOH HOH . GA 11 HOH F 4 404 110 HOH HOH . GA 11 HOH F 5 405 15 HOH HOH . GA 11 HOH F 6 406 104 HOH HOH . HA 11 HOH G 1 201 67 HOH HOH . HA 11 HOH G 2 202 2 HOH HOH . HA 11 HOH G 3 203 41 HOH HOH . HA 11 HOH G 4 204 84 HOH HOH . HA 11 HOH G 5 205 54 HOH HOH . HA 11 HOH G 6 206 101 HOH HOH . HA 11 HOH G 7 207 24 HOH HOH . HA 11 HOH G 8 208 73 HOH HOH . HA 11 HOH G 9 209 18 HOH HOH . HA 11 HOH G 10 210 9 HOH HOH . HA 11 HOH G 11 211 66 HOH HOH . HA 11 HOH G 12 212 60 HOH HOH . IA 11 HOH H 1 301 123 HOH HOH . IA 11 HOH H 2 302 43 HOH HOH . IA 11 HOH H 3 303 103 HOH HOH . IA 11 HOH H 4 304 21 HOH HOH . IA 11 HOH H 5 305 49 HOH HOH . IA 11 HOH H 6 306 50 HOH HOH . IA 11 HOH H 7 307 45 HOH HOH . IA 11 HOH H 8 308 81 HOH HOH . JA 11 HOH I 1 401 80 HOH HOH . JA 11 HOH I 2 402 68 HOH HOH . JA 11 HOH I 3 403 3 HOH HOH . JA 11 HOH I 4 404 16 HOH HOH . JA 11 HOH I 5 405 113 HOH HOH . JA 11 HOH I 6 406 107 HOH HOH . KA 11 HOH J 1 201 97 HOH HOH . KA 11 HOH J 2 202 23 HOH HOH . KA 11 HOH J 3 203 71 HOH HOH . KA 11 HOH J 4 204 55 HOH HOH . KA 11 HOH J 5 205 116 HOH HOH . KA 11 HOH J 6 206 90 HOH HOH . KA 11 HOH J 7 207 5 HOH HOH . KA 11 HOH J 8 208 82 HOH HOH . KA 11 HOH J 9 209 40 HOH HOH . KA 11 HOH J 10 210 53 HOH HOH . KA 11 HOH J 11 211 78 HOH HOH . LA 11 HOH K 1 301 99 HOH HOH . LA 11 HOH K 2 302 62 HOH HOH . LA 11 HOH K 3 303 117 HOH HOH . LA 11 HOH K 4 304 26 HOH HOH . LA 11 HOH K 5 305 74 HOH HOH . LA 11 HOH K 6 306 7 HOH HOH . LA 11 HOH K 7 307 46 HOH HOH . LA 11 HOH K 8 308 51 HOH HOH . LA 11 HOH K 9 309 22 HOH HOH . LA 11 HOH K 10 310 86 HOH HOH . LA 11 HOH K 11 311 118 HOH HOH . LA 11 HOH K 12 312 52 HOH HOH . LA 11 HOH K 13 313 75 HOH HOH . LA 11 HOH K 14 314 96 HOH HOH . LA 11 HOH K 15 315 56 HOH HOH . LA 11 HOH K 16 316 85 HOH HOH . MA 11 HOH L 1 401 127 HOH HOH . MA 11 HOH L 2 402 102 HOH HOH . MA 11 HOH L 3 403 10 HOH HOH . MA 11 HOH L 4 404 100 HOH HOH . MA 11 HOH L 5 405 128 HOH HOH . MA 11 HOH L 6 406 33 HOH HOH . MA 11 HOH L 7 407 122 HOH HOH . MA 11 HOH L 8 408 20 HOH HOH . MA 11 HOH L 9 409 125 HOH HOH . MA 11 HOH L 10 410 120 HOH HOH . MA 11 HOH L 11 411 79 HOH HOH . MA 11 HOH L 12 412 35 HOH HOH . MA 11 HOH L 13 413 58 HOH HOH . MA 11 HOH L 14 414 36 HOH HOH . MA 11 HOH L 15 415 108 HOH HOH . MA 11 HOH L 16 416 38 HOH HOH . MA 11 HOH L 17 417 92 HOH HOH . MA 11 HOH L 18 418 1 HOH HOH . MA 11 HOH L 19 419 8 HOH HOH . MA 11 HOH L 20 420 112 HOH HOH . MA 11 HOH L 21 421 126 HOH HOH . NA 11 HOH X 1 101 13 HOH HOH . OA 11 HOH Y 1 101 12 HOH HOH . PA 11 HOH Z 1 101 11 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PEG . . . R 7 -6.843 -10.378 20.524 1 74.92 ? C1 PEG 202 B 1 HETATM 2 O O1 PEG . . . R 7 -6.385 -10.258 19.169 1 61.66 ? O1 PEG 202 B 1 HETATM 3 C C2 PEG . . . R 7 -6.818 -9.062 21.306 1 76.64 ? C2 PEG 202 B 1 HETATM 4 O O2 PEG . . . R 7 -6.423 -9.265 22.681 1 77.23 ? O2 PEG 202 B 1 HETATM 5 C C3 PEG . . . R 7 -5.165 -8.687 23.1 1 75.37 ? C3 PEG 202 B 1 HETATM 6 C C4 PEG . . . R 7 -5.387 -7.654 24.218 1 74.82 ? C4 PEG 202 B 1 HETATM 7 O O4 PEG . . . R 7 -4.179 -7.17 24.849 1 71.79 ? O4 PEG 202 B 1 # _model_server_stats.io_time_ms 30 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 7 #