data_9BK4 # _model_server_result.job_id k54CtOy1nexhgj0az2kIJQ _model_server_result.datetime_utc '2024-10-18 01:17:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9bk4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":201}' # _entry.id 9BK4 # _exptl.entry_id 9BK4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 88.062 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PYRUVIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9BK4 _cell.length_a 75.404 _cell.length_b 75.404 _cell.length_c 279.606 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9BK4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,F 1 1,2,4 B,E,G 2 1,3,5 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_675 -y+1,x-y+2,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 130.603559 0 3 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 37.702 65.30178 0 4 'crystal symmetry operation' 3_465 -x+y-1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -113.106 65.30178 0 5 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -37.702 65.30178 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C3 H4 O3' _chem_comp.formula_weight 88.062 _chem_comp.id PYR _chem_comp.mon_nstd_flag . _chem_comp.name 'PYRUVIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O PYR doub 277 n n C OXT PYR sing 278 n n C CA PYR sing 279 n n OXT HXT PYR sing 280 n n CA O3 PYR doub 281 n n CA CB PYR sing 282 n n CB HB1 PYR sing 283 n n CB HB2 PYR sing 284 n n CB HB3 PYR sing 285 n n # _atom_sites.entry_id 9BK4 _atom_sites.fract_transf_matrix[1][1] 0.013262 _atom_sites.fract_transf_matrix[1][2] 0.007657 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015314 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003576 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PYR A 1 201 1 PYR PYR . D 3 SO4 A 1 202 1 SO4 SO4 . E 2 PYR B 1 201 2 PYR PYR . F 4 HOH A 1 301 206 HOH HOH . F 4 HOH A 2 302 122 HOH HOH . F 4 HOH A 3 303 255 HOH HOH . F 4 HOH A 4 304 420 HOH HOH . F 4 HOH A 5 305 491 HOH HOH . F 4 HOH A 6 306 313 HOH HOH . F 4 HOH A 7 307 91 HOH HOH . F 4 HOH A 8 308 5 HOH HOH . F 4 HOH A 9 309 207 HOH HOH . F 4 HOH A 10 310 195 HOH HOH . F 4 HOH A 11 311 92 HOH HOH . F 4 HOH A 12 312 175 HOH HOH . F 4 HOH A 13 313 127 HOH HOH . F 4 HOH A 14 314 36 HOH HOH . F 4 HOH A 15 315 14 HOH HOH . F 4 HOH A 16 316 160 HOH HOH . F 4 HOH A 17 317 75 HOH HOH . F 4 HOH A 18 318 7 HOH HOH . F 4 HOH A 19 319 61 HOH HOH . F 4 HOH A 20 320 44 HOH HOH . F 4 HOH A 21 321 20 HOH HOH . F 4 HOH A 22 322 45 HOH HOH . F 4 HOH A 23 323 68 HOH HOH . F 4 HOH A 24 324 63 HOH HOH . F 4 HOH A 25 325 12 HOH HOH . F 4 HOH A 26 326 612 HOH HOH . F 4 HOH A 27 327 24 HOH HOH . F 4 HOH A 28 328 162 HOH HOH . F 4 HOH A 29 329 238 HOH HOH . F 4 HOH A 30 330 51 HOH HOH . F 4 HOH A 31 331 52 HOH HOH . F 4 HOH A 32 332 359 HOH HOH . F 4 HOH A 33 333 95 HOH HOH . F 4 HOH A 34 334 139 HOH HOH . F 4 HOH A 35 335 257 HOH HOH . F 4 HOH A 36 336 72 HOH HOH . F 4 HOH A 37 337 256 HOH HOH . F 4 HOH A 38 338 19 HOH HOH . F 4 HOH A 39 339 100 HOH HOH . F 4 HOH A 40 340 42 HOH HOH . F 4 HOH A 41 341 16 HOH HOH . F 4 HOH A 42 342 101 HOH HOH . F 4 HOH A 43 343 124 HOH HOH . F 4 HOH A 44 344 38 HOH HOH . F 4 HOH A 45 345 119 HOH HOH . F 4 HOH A 46 346 126 HOH HOH . F 4 HOH A 47 347 54 HOH HOH . F 4 HOH A 48 348 81 HOH HOH . F 4 HOH A 49 349 235 HOH HOH . F 4 HOH A 50 350 197 HOH HOH . F 4 HOH A 51 351 67 HOH HOH . F 4 HOH A 52 352 156 HOH HOH . F 4 HOH A 53 353 116 HOH HOH . F 4 HOH A 54 354 33 HOH HOH . F 4 HOH A 55 355 82 HOH HOH . F 4 HOH A 56 356 64 HOH HOH . F 4 HOH A 57 357 125 HOH HOH . F 4 HOH A 58 358 121 HOH HOH . F 4 HOH A 59 359 6 HOH HOH . F 4 HOH A 60 360 71 HOH HOH . F 4 HOH A 61 361 135 HOH HOH . F 4 HOH A 62 362 140 HOH HOH . F 4 HOH A 63 363 58 HOH HOH . F 4 HOH A 64 364 15 HOH HOH . F 4 HOH A 65 365 278 HOH HOH . F 4 HOH A 66 366 66 HOH HOH . F 4 HOH A 67 367 189 HOH HOH . F 4 HOH A 68 368 88 HOH HOH . F 4 HOH A 69 369 43 HOH HOH . F 4 HOH A 70 370 25 HOH HOH . F 4 HOH A 71 371 85 HOH HOH . F 4 HOH A 72 372 143 HOH HOH . F 4 HOH A 73 373 32 HOH HOH . F 4 HOH A 74 374 57 HOH HOH . F 4 HOH A 75 375 194 HOH HOH . F 4 HOH A 76 376 169 HOH HOH . F 4 HOH A 77 377 93 HOH HOH . F 4 HOH A 78 378 240 HOH HOH . F 4 HOH A 79 379 161 HOH HOH . F 4 HOH A 80 380 247 HOH HOH . F 4 HOH A 81 381 178 HOH HOH . F 4 HOH A 82 382 39 HOH HOH . F 4 HOH A 83 383 158 HOH HOH . F 4 HOH A 84 384 118 HOH HOH . F 4 HOH A 85 385 69 HOH HOH . F 4 HOH A 86 386 180 HOH HOH . F 4 HOH A 87 387 289 HOH HOH . F 4 HOH A 88 388 164 HOH HOH . F 4 HOH A 89 389 163 HOH HOH . F 4 HOH A 90 390 213 HOH HOH . F 4 HOH A 91 391 104 HOH HOH . F 4 HOH A 92 392 105 HOH HOH . F 4 HOH A 93 393 111 HOH HOH . F 4 HOH A 94 394 138 HOH HOH . F 4 HOH A 95 395 585 HOH HOH . F 4 HOH A 96 396 171 HOH HOH . F 4 HOH A 97 397 136 HOH HOH . F 4 HOH A 98 398 233 HOH HOH . F 4 HOH A 99 399 216 HOH HOH . F 4 HOH A 100 400 183 HOH HOH . F 4 HOH A 101 401 181 HOH HOH . F 4 HOH A 102 402 239 HOH HOH . F 4 HOH A 103 403 112 HOH HOH . F 4 HOH A 104 404 591 HOH HOH . F 4 HOH A 105 405 231 HOH HOH . F 4 HOH A 106 406 179 HOH HOH . F 4 HOH A 107 407 557 HOH HOH . F 4 HOH A 108 408 576 HOH HOH . F 4 HOH A 109 409 287 HOH HOH . F 4 HOH A 110 410 588 HOH HOH . F 4 HOH A 111 411 456 HOH HOH . F 4 HOH A 112 412 152 HOH HOH . F 4 HOH A 113 413 246 HOH HOH . F 4 HOH A 114 414 17 HOH HOH . F 4 HOH A 115 415 134 HOH HOH . F 4 HOH A 116 416 589 HOH HOH . F 4 HOH A 117 417 363 HOH HOH . F 4 HOH A 118 418 18 HOH HOH . F 4 HOH A 119 419 470 HOH HOH . F 4 HOH A 120 420 128 HOH HOH . F 4 HOH A 121 421 184 HOH HOH . F 4 HOH A 122 422 376 HOH HOH . F 4 HOH A 123 423 113 HOH HOH . F 4 HOH A 124 424 154 HOH HOH . F 4 HOH A 125 425 350 HOH HOH . F 4 HOH A 126 426 501 HOH HOH . F 4 HOH A 127 427 209 HOH HOH . F 4 HOH A 128 428 79 HOH HOH . F 4 HOH A 129 429 288 HOH HOH . F 4 HOH A 130 430 129 HOH HOH . F 4 HOH A 131 431 229 HOH HOH . F 4 HOH A 132 432 455 HOH HOH . F 4 HOH A 133 433 120 HOH HOH . F 4 HOH A 134 434 87 HOH HOH . F 4 HOH A 135 435 502 HOH HOH . F 4 HOH A 136 436 613 HOH HOH . F 4 HOH A 137 437 130 HOH HOH . F 4 HOH A 138 438 188 HOH HOH . F 4 HOH A 139 439 131 HOH HOH . F 4 HOH A 140 440 248 HOH HOH . F 4 HOH A 141 441 30 HOH HOH . F 4 HOH A 142 442 144 HOH HOH . F 4 HOH A 143 443 114 HOH HOH . F 4 HOH A 144 444 539 HOH HOH . F 4 HOH A 145 445 326 HOH HOH . G 4 HOH B 1 301 265 HOH HOH . G 4 HOH B 2 302 273 HOH HOH . G 4 HOH B 3 303 60 HOH HOH . G 4 HOH B 4 304 3 HOH HOH . G 4 HOH B 5 305 372 HOH HOH . G 4 HOH B 6 306 166 HOH HOH . G 4 HOH B 7 307 464 HOH HOH . G 4 HOH B 8 308 553 HOH HOH . G 4 HOH B 9 309 37 HOH HOH . G 4 HOH B 10 310 90 HOH HOH . G 4 HOH B 11 311 212 HOH HOH . G 4 HOH B 12 312 253 HOH HOH . G 4 HOH B 13 313 259 HOH HOH . G 4 HOH B 14 314 174 HOH HOH . G 4 HOH B 15 315 86 HOH HOH . G 4 HOH B 16 316 28 HOH HOH . G 4 HOH B 17 317 31 HOH HOH . G 4 HOH B 18 318 254 HOH HOH . G 4 HOH B 19 319 107 HOH HOH . G 4 HOH B 20 320 70 HOH HOH . G 4 HOH B 21 321 55 HOH HOH . G 4 HOH B 22 322 214 HOH HOH . G 4 HOH B 23 323 4 HOH HOH . G 4 HOH B 24 324 108 HOH HOH . G 4 HOH B 25 325 185 HOH HOH . G 4 HOH B 26 326 41 HOH HOH . G 4 HOH B 27 327 26 HOH HOH . G 4 HOH B 28 328 77 HOH HOH . G 4 HOH B 29 329 232 HOH HOH . G 4 HOH B 30 330 49 HOH HOH . G 4 HOH B 31 331 210 HOH HOH . G 4 HOH B 32 332 21 HOH HOH . G 4 HOH B 33 333 211 HOH HOH . G 4 HOH B 34 334 10 HOH HOH . G 4 HOH B 35 335 2 HOH HOH . G 4 HOH B 36 336 463 HOH HOH . G 4 HOH B 37 337 102 HOH HOH . G 4 HOH B 38 338 490 HOH HOH . G 4 HOH B 39 339 29 HOH HOH . G 4 HOH B 40 340 80 HOH HOH . G 4 HOH B 41 341 117 HOH HOH . G 4 HOH B 42 342 147 HOH HOH . G 4 HOH B 43 343 261 HOH HOH . G 4 HOH B 44 344 23 HOH HOH . G 4 HOH B 45 345 50 HOH HOH . G 4 HOH B 46 346 205 HOH HOH . G 4 HOH B 47 347 13 HOH HOH . G 4 HOH B 48 348 109 HOH HOH . G 4 HOH B 49 349 472 HOH HOH . G 4 HOH B 50 350 27 HOH HOH . G 4 HOH B 51 351 48 HOH HOH . G 4 HOH B 52 352 47 HOH HOH . G 4 HOH B 53 353 35 HOH HOH . G 4 HOH B 54 354 242 HOH HOH . G 4 HOH B 55 355 159 HOH HOH . G 4 HOH B 56 356 34 HOH HOH . G 4 HOH B 57 357 65 HOH HOH . G 4 HOH B 58 358 84 HOH HOH . G 4 HOH B 59 359 73 HOH HOH . G 4 HOH B 60 360 260 HOH HOH . G 4 HOH B 61 361 74 HOH HOH . G 4 HOH B 62 362 486 HOH HOH . G 4 HOH B 63 363 1 HOH HOH . G 4 HOH B 64 364 56 HOH HOH . G 4 HOH B 65 365 62 HOH HOH . G 4 HOH B 66 366 368 HOH HOH . G 4 HOH B 67 367 243 HOH HOH . G 4 HOH B 68 368 137 HOH HOH . G 4 HOH B 69 369 9 HOH HOH . G 4 HOH B 70 370 167 HOH HOH . G 4 HOH B 71 371 153 HOH HOH . G 4 HOH B 72 372 106 HOH HOH . G 4 HOH B 73 373 177 HOH HOH . G 4 HOH B 74 374 99 HOH HOH . G 4 HOH B 75 375 96 HOH HOH . G 4 HOH B 76 376 148 HOH HOH . G 4 HOH B 77 377 241 HOH HOH . G 4 HOH B 78 378 146 HOH HOH . G 4 HOH B 79 379 97 HOH HOH . G 4 HOH B 80 380 11 HOH HOH . G 4 HOH B 81 381 487 HOH HOH . G 4 HOH B 82 382 286 HOH HOH . G 4 HOH B 83 383 89 HOH HOH . G 4 HOH B 84 384 150 HOH HOH . G 4 HOH B 85 385 303 HOH HOH . G 4 HOH B 86 386 46 HOH HOH . G 4 HOH B 87 387 304 HOH HOH . G 4 HOH B 88 388 193 HOH HOH . G 4 HOH B 89 389 560 HOH HOH . G 4 HOH B 90 390 279 HOH HOH . G 4 HOH B 91 391 450 HOH HOH . G 4 HOH B 92 392 149 HOH HOH . G 4 HOH B 93 393 567 HOH HOH . G 4 HOH B 94 394 168 HOH HOH . G 4 HOH B 95 395 190 HOH HOH . G 4 HOH B 96 396 566 HOH HOH . G 4 HOH B 97 397 236 HOH HOH . G 4 HOH B 98 398 250 HOH HOH . G 4 HOH B 99 399 270 HOH HOH . G 4 HOH B 100 400 412 HOH HOH . G 4 HOH B 101 401 290 HOH HOH . G 4 HOH B 102 402 103 HOH HOH . G 4 HOH B 103 403 218 HOH HOH . G 4 HOH B 104 404 358 HOH HOH . G 4 HOH B 105 405 649 HOH HOH . G 4 HOH B 106 406 208 HOH HOH . G 4 HOH B 107 407 234 HOH HOH . G 4 HOH B 108 408 237 HOH HOH . G 4 HOH B 109 409 245 HOH HOH . G 4 HOH B 110 410 477 HOH HOH . G 4 HOH B 111 411 476 HOH HOH . G 4 HOH B 112 412 123 HOH HOH . G 4 HOH B 113 413 53 HOH HOH . G 4 HOH B 114 414 616 HOH HOH . G 4 HOH B 115 415 133 HOH HOH . G 4 HOH B 116 416 227 HOH HOH . G 4 HOH B 117 417 462 HOH HOH . G 4 HOH B 118 418 547 HOH HOH . G 4 HOH B 119 419 8 HOH HOH . G 4 HOH B 120 420 267 HOH HOH . G 4 HOH B 121 421 493 HOH HOH . G 4 HOH B 122 422 301 HOH HOH . G 4 HOH B 123 423 165 HOH HOH . G 4 HOH B 124 424 225 HOH HOH . G 4 HOH B 125 425 203 HOH HOH . G 4 HOH B 126 426 176 HOH HOH . G 4 HOH B 127 427 187 HOH HOH . G 4 HOH B 128 428 228 HOH HOH . G 4 HOH B 129 429 110 HOH HOH . G 4 HOH B 130 430 204 HOH HOH . G 4 HOH B 131 431 98 HOH HOH . G 4 HOH B 132 432 94 HOH HOH . G 4 HOH B 133 433 40 HOH HOH . G 4 HOH B 134 434 382 HOH HOH . G 4 HOH B 135 435 76 HOH HOH . G 4 HOH B 136 436 217 HOH HOH . G 4 HOH B 137 437 145 HOH HOH . G 4 HOH B 138 438 182 HOH HOH . G 4 HOH B 139 439 198 HOH HOH . G 4 HOH B 140 440 141 HOH HOH . G 4 HOH B 141 441 636 HOH HOH . G 4 HOH B 142 442 186 HOH HOH . G 4 HOH B 143 443 59 HOH HOH . G 4 HOH B 144 444 115 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C PYR . . . E 2 -3.699 55.396 101.368 1 27.81 ? C PYR 201 B 1 HETATM 2 O O PYR . . . E 2 -3.753 56.515 101.89 1 30.98 ? O PYR 201 B 1 HETATM 3 O OXT PYR . . . E 2 -2.809 54.895 100.656 1 24.96 ? OXT PYR 201 B 1 HETATM 4 C CA PYR . . . E 2 -4.915 54.461 101.613 1 28.25 ? CA PYR 201 B 1 HETATM 5 O O3 PYR . . . E 2 -4.723 53.286 101.876 1 18.91 ? O3 PYR 201 B 1 HETATM 6 C CB PYR . . . E 2 -6.287 55.083 101.467 1 36.85 ? CB PYR 201 B 1 HETATM 7 H HB1 PYR . . . E 2 -6.523 55.202 100.534 1 44.22 ? HB1 PYR 201 B 1 HETATM 8 H HB2 PYR . . . E 2 -6.326 55.955 101.892 1 44.22 ? HB2 PYR 201 B 1 HETATM 9 H HB3 PYR . . . E 2 -6.971 54.529 101.874 1 44.22 ? HB3 PYR 201 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 9 #