data_9BK8 # _model_server_result.job_id VVe9ugV_yTAhY4wyX2UXEg _model_server_result.datetime_utc '2024-11-05 03:56:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9bk8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 9BK8 # _exptl.entry_id 9BK8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 102.089 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-KETOBUTYRIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 9BK8 _cell.length_a 75.547 _cell.length_b 75.547 _cell.length_c 139.748 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9BK8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall 'R 3 2"' _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_545 -y,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 37.7735 -65.425621 0 3 'crystal symmetry operation' 3_655 -x+y+1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 75.547 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C4 H6 O3' _chem_comp.formula_weight 102.089 _chem_comp.id 2KT _chem_comp.mon_nstd_flag . _chem_comp.name '2-KETOBUTYRIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '2-OXOBUTANOIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C4 C3 2KT sing 1 n n C4 H41 2KT sing 2 n n C4 H42 2KT sing 3 n n C4 H43 2KT sing 4 n n C3 C2 2KT sing 5 n n C3 H31 2KT sing 6 n n C3 H32 2KT sing 7 n n C2 O3 2KT doub 8 n n C2 C 2KT sing 9 n n C OXT 2KT sing 10 n n C O 2KT doub 11 n n OXT HXT 2KT sing 12 n n # _atom_sites.entry_id 9BK8 _atom_sites.fract_transf_matrix[1][1] 0.013237 _atom_sites.fract_transf_matrix[1][2] 0.007642 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015285 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007156 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 2KT A 1 201 1 2KT 2KT . C 3 HOH A 1 301 146 HOH HOH . C 3 HOH A 2 302 193 HOH HOH . C 3 HOH A 3 303 163 HOH HOH . C 3 HOH A 4 304 253 HOH HOH . C 3 HOH A 5 305 44 HOH HOH . C 3 HOH A 6 306 131 HOH HOH . C 3 HOH A 7 307 31 HOH HOH . C 3 HOH A 8 308 13 HOH HOH . C 3 HOH A 9 309 82 HOH HOH . C 3 HOH A 10 310 112 HOH HOH . C 3 HOH A 11 311 37 HOH HOH . C 3 HOH A 12 312 63 HOH HOH . C 3 HOH A 13 313 35 HOH HOH . C 3 HOH A 14 314 29 HOH HOH . C 3 HOH A 15 315 12 HOH HOH . C 3 HOH A 16 316 69 HOH HOH . C 3 HOH A 17 317 45 HOH HOH . C 3 HOH A 18 318 14 HOH HOH . C 3 HOH A 19 319 8 HOH HOH . C 3 HOH A 20 320 25 HOH HOH . C 3 HOH A 21 321 72 HOH HOH . C 3 HOH A 22 322 28 HOH HOH . C 3 HOH A 23 323 1 HOH HOH . C 3 HOH A 24 324 48 HOH HOH . C 3 HOH A 25 325 3 HOH HOH . C 3 HOH A 26 326 10 HOH HOH . C 3 HOH A 27 327 24 HOH HOH . C 3 HOH A 28 328 46 HOH HOH . C 3 HOH A 29 329 4 HOH HOH . C 3 HOH A 30 330 6 HOH HOH . C 3 HOH A 31 331 42 HOH HOH . C 3 HOH A 32 332 60 HOH HOH . C 3 HOH A 33 333 23 HOH HOH . C 3 HOH A 34 334 16 HOH HOH . C 3 HOH A 35 335 50 HOH HOH . C 3 HOH A 36 336 26 HOH HOH . C 3 HOH A 37 337 9 HOH HOH . C 3 HOH A 38 338 20 HOH HOH . C 3 HOH A 39 339 22 HOH HOH . C 3 HOH A 40 340 2 HOH HOH . C 3 HOH A 41 341 30 HOH HOH . C 3 HOH A 42 342 33 HOH HOH . C 3 HOH A 43 343 7 HOH HOH . C 3 HOH A 44 344 21 HOH HOH . C 3 HOH A 45 345 91 HOH HOH . C 3 HOH A 46 346 55 HOH HOH . C 3 HOH A 47 347 83 HOH HOH . C 3 HOH A 48 348 5 HOH HOH . C 3 HOH A 49 349 77 HOH HOH . C 3 HOH A 50 350 71 HOH HOH . C 3 HOH A 51 351 59 HOH HOH . C 3 HOH A 52 352 205 HOH HOH . C 3 HOH A 53 353 89 HOH HOH . C 3 HOH A 54 354 43 HOH HOH . C 3 HOH A 55 355 54 HOH HOH . C 3 HOH A 56 356 27 HOH HOH . C 3 HOH A 57 357 11 HOH HOH . C 3 HOH A 58 358 17 HOH HOH . C 3 HOH A 59 359 215 HOH HOH . C 3 HOH A 60 360 64 HOH HOH . C 3 HOH A 61 361 104 HOH HOH . C 3 HOH A 62 362 185 HOH HOH . C 3 HOH A 63 363 113 HOH HOH . C 3 HOH A 64 364 99 HOH HOH . C 3 HOH A 65 365 32 HOH HOH . C 3 HOH A 66 366 57 HOH HOH . C 3 HOH A 67 367 188 HOH HOH . C 3 HOH A 68 368 52 HOH HOH . C 3 HOH A 69 369 68 HOH HOH . C 3 HOH A 70 370 58 HOH HOH . C 3 HOH A 71 371 136 HOH HOH . C 3 HOH A 72 372 84 HOH HOH . C 3 HOH A 73 373 34 HOH HOH . C 3 HOH A 74 374 183 HOH HOH . C 3 HOH A 75 375 49 HOH HOH . C 3 HOH A 76 376 51 HOH HOH . C 3 HOH A 77 377 186 HOH HOH . C 3 HOH A 78 378 249 HOH HOH . C 3 HOH A 79 379 87 HOH HOH . C 3 HOH A 80 380 92 HOH HOH . C 3 HOH A 81 381 190 HOH HOH . C 3 HOH A 82 382 176 HOH HOH . C 3 HOH A 83 383 198 HOH HOH . C 3 HOH A 84 384 47 HOH HOH . C 3 HOH A 85 385 187 HOH HOH . C 3 HOH A 86 386 117 HOH HOH . C 3 HOH A 87 387 61 HOH HOH . C 3 HOH A 88 388 256 HOH HOH . C 3 HOH A 89 389 76 HOH HOH . C 3 HOH A 90 390 143 HOH HOH . C 3 HOH A 91 391 65 HOH HOH . C 3 HOH A 92 392 100 HOH HOH . C 3 HOH A 93 393 279 HOH HOH . C 3 HOH A 94 394 207 HOH HOH . C 3 HOH A 95 395 144 HOH HOH . C 3 HOH A 96 396 106 HOH HOH . C 3 HOH A 97 397 18 HOH HOH . C 3 HOH A 98 398 39 HOH HOH . C 3 HOH A 99 399 67 HOH HOH . C 3 HOH A 100 400 194 HOH HOH . C 3 HOH A 101 401 212 HOH HOH . C 3 HOH A 102 402 199 HOH HOH . C 3 HOH A 103 403 93 HOH HOH . C 3 HOH A 104 404 179 HOH HOH . C 3 HOH A 105 405 110 HOH HOH . C 3 HOH A 106 406 19 HOH HOH . C 3 HOH A 107 407 105 HOH HOH . C 3 HOH A 108 408 70 HOH HOH . C 3 HOH A 109 409 132 HOH HOH . C 3 HOH A 110 410 62 HOH HOH . C 3 HOH A 111 411 66 HOH HOH . C 3 HOH A 112 412 262 HOH HOH . C 3 HOH A 113 413 81 HOH HOH . C 3 HOH A 114 414 273 HOH HOH . C 3 HOH A 115 415 97 HOH HOH . C 3 HOH A 116 416 41 HOH HOH . C 3 HOH A 117 417 90 HOH HOH . C 3 HOH A 118 418 166 HOH HOH . C 3 HOH A 119 419 75 HOH HOH . C 3 HOH A 120 420 79 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 2KT . . . B 2 24.635 -22.758 9.211 1 31.08 ? C4 2KT 201 A 1 HETATM 2 C C3 2KT . . . B 2 25.125 -21.452 9.838 1 32.75 ? C3 2KT 201 A 1 HETATM 3 C C2 2KT . . . B 2 26.056 -20.781 8.814 1 26.6 ? C2 2KT 201 A 1 HETATM 4 O O3 2KT . . . B 2 27.106 -21.251 8.535 1 15.26 ? O3 2KT 201 A 1 HETATM 5 C C 2KT . . . B 2 25.606 -19.496 8.145 1 21.48 ? C 2KT 201 A 1 HETATM 6 O OXT 2KT . . . B 2 26.362 -18.957 7.275 1 16.77 ? OXT 2KT 201 A 1 HETATM 7 O O 2KT . . . B 2 24.474 -19.032 8.487 1 26.11 ? O 2KT 201 A 1 HETATM 8 H H41 2KT . . . B 2 23.83 -23.053 9.664 1 37.29 ? H41 2KT 201 A 1 HETATM 9 H H42 2KT . . . B 2 25.323 -23.437 9.299 1 37.29 ? H42 2KT 201 A 1 HETATM 10 H H43 2KT . . . B 2 24.442 -22.614 8.271 1 37.29 ? H43 2KT 201 A 1 HETATM 11 H H31 2KT . . . B 2 24.371 -20.873 10.032 1 39.3 ? H31 2KT 201 A 1 HETATM 12 H H32 2KT . . . B 2 25.61 -21.637 10.657 1 39.3 ? H32 2KT 201 A 1 # _model_server_stats.io_time_ms 100 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 12 #