data_9BKZ # _model_server_result.job_id IYSCNn6bv9jJzjvPwUPp0w _model_server_result.datetime_utc '2024-12-21 16:46:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9bkz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 9BKZ # _exptl.entry_id 9BKZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 767.534 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COENZYME A' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 115.22 _cell.angle_gamma 90 _cell.entry_id 9BKZ _cell.length_a 70.096 _cell.length_b 50.551 _cell.length_c 70.595 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9BKZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,G 1 1 B,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H36 N7 O16 P3 S' _chem_comp.formula_weight 767.534 _chem_comp.id COA _chem_comp.mon_nstd_flag . _chem_comp.name 'COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A COA sing 114 n y N1A C6A COA doub 115 n y C2A N3A COA doub 116 n y C2A H2A COA sing 117 n n N3A C4A COA sing 118 n y C4A C5A COA doub 119 n y C4A N9A COA sing 120 n y C5A C6A COA sing 121 n y C5A N7A COA sing 122 n y C6A N6A COA sing 123 n n N6A H61A COA sing 124 n n N6A H62A COA sing 125 n n N7A C8A COA doub 126 n y C8A N9A COA sing 127 n y C8A H8A COA sing 128 n n N9A C1B COA sing 129 n n C1B C2B COA sing 130 n n C1B O4B COA sing 131 n n C1B H1B COA sing 132 n n C2B O2B COA sing 133 n n C2B C3B COA sing 134 n n C2B H2B COA sing 135 n n O2B HO2A COA sing 136 n n C3B O3B COA sing 137 n n C3B C4B COA sing 138 n n C3B H3B COA sing 139 n n O3B P3B COA sing 140 n n P3B O7A COA doub 141 n n P3B O8A COA sing 142 n n P3B O9A COA sing 143 n n O8A HOA8 COA sing 144 n n O9A HOA9 COA sing 145 n n C4B O4B COA sing 146 n n C4B C5B COA sing 147 n n C4B H4B COA sing 148 n n C5B O5B COA sing 149 n n C5B H51A COA sing 150 n n C5B H52A COA sing 151 n n O5B P1A COA sing 152 n n P1A O1A COA doub 153 n n P1A O2A COA sing 154 n n P1A O3A COA sing 155 n n O2A HOA2 COA sing 156 n n O3A P2A COA sing 157 n n P2A O4A COA doub 158 n n P2A O5A COA sing 159 n n P2A O6A COA sing 160 n n O5A HOA5 COA sing 161 n n O6A CCP COA sing 162 n n CBP CCP COA sing 163 n n CBP CDP COA sing 164 n n CBP CEP COA sing 165 n n CBP CAP COA sing 166 n n CCP H121 COA sing 167 n n CCP H122 COA sing 168 n n CDP H131 COA sing 169 n n CDP H132 COA sing 170 n n CDP H133 COA sing 171 n n CEP H141 COA sing 172 n n CEP H142 COA sing 173 n n CEP H143 COA sing 174 n n CAP OAP COA sing 175 n n CAP C9P COA sing 176 n n CAP H10 COA sing 177 n n OAP HO1 COA sing 178 n n C9P O9P COA doub 179 n n C9P N8P COA sing 180 n n N8P C7P COA sing 181 n n N8P HN8 COA sing 182 n n C7P C6P COA sing 183 n n C7P H71 COA sing 184 n n C7P H72 COA sing 185 n n C6P C5P COA sing 186 n n C6P H61 COA sing 187 n n C6P H62 COA sing 188 n n C5P O5P COA doub 189 n n C5P N4P COA sing 190 n n N4P C3P COA sing 191 n n N4P HN4 COA sing 192 n n C3P C2P COA sing 193 n n C3P H31 COA sing 194 n n C3P H32 COA sing 195 n n C2P S1P COA sing 196 n n C2P H21 COA sing 197 n n C2P H22 COA sing 198 n n S1P HS1 COA sing 199 n n # _atom_sites.entry_id 9BKZ _atom_sites.fract_transf_matrix[1][1] 0.014266 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006719 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019782 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015658 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ADP A 1 301 1 ADP ADP . D 3 COA A 1 302 3 COA COA . E 4 MPD A 1 303 301 MPD MPD . F 2 ADP B 1 301 2 ADP ADP . G 5 HOH A 1 401 12 HOH HOH . G 5 HOH A 2 402 6 HOH HOH . G 5 HOH A 3 403 1 HOH HOH . G 5 HOH A 4 404 5 HOH HOH . G 5 HOH A 5 405 4 HOH HOH . G 5 HOH A 6 406 9 HOH HOH . G 5 HOH A 7 407 7 HOH HOH . G 5 HOH A 8 408 11 HOH HOH . G 5 HOH A 9 409 8 HOH HOH . H 5 HOH B 1 401 2 HOH HOH . H 5 HOH B 2 402 10 HOH HOH . H 5 HOH B 3 403 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A COA . . . D 3 -23.205 -8.096 -23.76 1 59.81 ? N1A COA 302 A 1 HETATM 2 C C2A COA . . . D 3 -24.062 -9.075 -24.072 1 61.94 ? C2A COA 302 A 1 HETATM 3 N N3A COA . . . D 3 -25.337 -8.995 -24.439 1 57.66 ? N3A COA 302 A 1 HETATM 4 C C4A COA . . . D 3 -25.734 -7.715 -24.474 1 62.05 ? C4A COA 302 A 1 HETATM 5 C C5A COA . . . D 3 -24.978 -6.603 -24.181 1 60.23 ? C5A COA 302 A 1 HETATM 6 C C6A COA . . . D 3 -23.641 -6.816 -23.805 1 56.51 ? C6A COA 302 A 1 HETATM 7 N N6A COA . . . D 3 -22.797 -5.84 -23.491 1 59.14 ? N6A COA 302 A 1 HETATM 8 N N7A COA . . . D 3 -25.742 -5.454 -24.33 1 62.5 ? N7A COA 302 A 1 HETATM 9 C C8A COA . . . D 3 -26.924 -5.886 -24.701 1 67.37 ? C8A COA 302 A 1 HETATM 10 N N9A COA . . . D 3 -26.974 -7.249 -24.805 1 65.68 ? N9A COA 302 A 1 HETATM 11 C C1B COA . . . D 3 -28.104 -8.059 -25.195 1 70.07 ? C1B COA 302 A 1 HETATM 12 C C2B COA . . . D 3 -29.379 -7.701 -24.44 1 72.15 ? C2B COA 302 A 1 HETATM 13 O O2B COA . . . D 3 -29.565 -8.526 -23.312 1 76.46 ? O2B COA 302 A 1 HETATM 14 C C3B COA . . . D 3 -30.442 -7.935 -25.51 1 78.3 ? C3B COA 302 A 1 HETATM 15 O O3B COA . . . D 3 -30.709 -9.323 -25.643 1 81.55 ? O3B COA 302 A 1 HETATM 16 P P3B COA . . . D 3 -32.298 -9.56 -25.663 1 86.51 ? P3B COA 302 A 1 HETATM 17 O O7A COA . . . D 3 -32.863 -8.694 -26.768 1 94.39 ? O7A COA 302 A 1 HETATM 18 O O8A COA . . . D 3 -32.513 -11.03 -25.927 1 94.67 ? O8A COA 302 A 1 HETATM 19 O O9A COA . . . D 3 -32.799 -9.146 -24.299 1 90.39 ? O9A COA 302 A 1 HETATM 20 C C4B COA . . . D 3 -29.735 -7.428 -26.753 1 80.72 ? C4B COA 302 A 1 HETATM 21 O O4B COA . . . D 3 -28.35 -7.806 -26.559 1 74.27 ? O4B COA 302 A 1 HETATM 22 C C5B COA . . . D 3 -29.815 -5.938 -26.974 1 76.16 ? C5B COA 302 A 1 HETATM 23 O O5B COA . . . D 3 -30.827 -5.371 -26.111 1 76.84 ? O5B COA 302 A 1 HETATM 24 P P1A COA . . . D 3 -30.808 -3.791 -25.869 1 67.42 ? P1A COA 302 A 1 HETATM 25 O O1A COA . . . D 3 -30.074 -3.128 -26.984 1 72.1 ? O1A COA 302 A 1 HETATM 26 O O2A COA . . . D 3 -30.386 -3.51 -24.468 1 63.55 ? O2A COA 302 A 1 HETATM 27 O O3A COA . . . D 3 -32.366 -3.468 -26.006 1 77.35 ? O3A COA 302 A 1 HETATM 28 P P2A COA . . . D 3 -33.336 -3.391 -27.274 1 81.89 ? P2A COA 302 A 1 HETATM 29 O O4A COA . . . D 3 -32.683 -4.067 -28.432 1 82.96 ? O4A COA 302 A 1 HETATM 30 O O5A COA . . . D 3 -33.829 -1.994 -27.434 1 81.82 ? O5A COA 302 A 1 HETATM 31 O O6A COA . . . D 3 -34.55 -4.298 -26.77 1 85.54 ? O6A COA 302 A 1 HETATM 32 C CBP COA . . . D 3 -36.119 -4.929 -25.056 1 84.18 ? CBP COA 302 A 1 HETATM 33 C CCP COA . . . D 3 -35.461 -3.76 -25.779 1 85.81 ? CCP COA 302 A 1 HETATM 34 C CDP COA . . . D 3 -35.029 -5.799 -24.426 1 88.02 ? CDP COA 302 A 1 HETATM 35 C CEP COA . . . D 3 -37.013 -4.386 -23.941 1 84.13 ? CEP COA 302 A 1 HETATM 36 C CAP COA . . . D 3 -36.984 -5.757 -26.016 1 90.23 ? CAP COA 302 A 1 HETATM 37 O OAP COA . . . D 3 -36.865 -5.21 -27.321 1 82.96 ? OAP COA 302 A 1 HETATM 38 C C9P COA . . . D 3 -36.652 -7.241 -26.054 1 95.04 ? C9P COA 302 A 1 HETATM 39 O O9P COA . . . D 3 -35.854 -7.669 -26.885 1 95.32 ? O9P COA 302 A 1 HETATM 40 N N8P COA . . . D 3 -37.282 -8.024 -25.19 1 108.45 ? N8P COA 302 A 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 92 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 1347 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 40 #