data_9BKZ # _model_server_result.job_id BoaR3AYDiVeEHKPbtMwf6A _model_server_result.datetime_utc '2024-12-21 16:59:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9bkz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":303}' # _entry.id 9BKZ # _exptl.entry_id 9BKZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 115.22 _cell.angle_gamma 90 _cell.entry_id 9BKZ _cell.length_a 70.096 _cell.length_b 50.551 _cell.length_c 70.595 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9BKZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,G 1 1 B,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 354 n n C1 H11 MPD sing 355 n n C1 H12 MPD sing 356 n n C1 H13 MPD sing 357 n n C2 O2 MPD sing 358 n n C2 CM MPD sing 359 n n C2 C3 MPD sing 360 n n O2 HO2 MPD sing 361 n n CM HM1 MPD sing 362 n n CM HM2 MPD sing 363 n n CM HM3 MPD sing 364 n n C3 C4 MPD sing 365 n n C3 H31 MPD sing 366 n n C3 H32 MPD sing 367 n n C4 O4 MPD sing 368 n n C4 C5 MPD sing 369 n n C4 H4 MPD sing 370 n n O4 HO4 MPD sing 371 n n C5 H51 MPD sing 372 n n C5 H52 MPD sing 373 n n C5 H53 MPD sing 374 n n # _atom_sites.entry_id 9BKZ _atom_sites.fract_transf_matrix[1][1] 0.014266 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006719 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019782 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015658 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ADP A 1 301 1 ADP ADP . D 3 COA A 1 302 3 COA COA . E 4 MPD A 1 303 301 MPD MPD . F 2 ADP B 1 301 2 ADP ADP . G 5 HOH A 1 401 12 HOH HOH . G 5 HOH A 2 402 6 HOH HOH . G 5 HOH A 3 403 1 HOH HOH . G 5 HOH A 4 404 5 HOH HOH . G 5 HOH A 5 405 4 HOH HOH . G 5 HOH A 6 406 9 HOH HOH . G 5 HOH A 7 407 7 HOH HOH . G 5 HOH A 8 408 11 HOH HOH . G 5 HOH A 9 409 8 HOH HOH . H 5 HOH B 1 401 2 HOH HOH . H 5 HOH B 2 402 10 HOH HOH . H 5 HOH B 3 403 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . E 4 -14.875 -10.188 -27.205 1 83.4 ? C1 MPD 303 A 1 HETATM 2 C C2 MPD . . . E 4 -14.535 -11.372 -26.308 1 82.17 ? C2 MPD 303 A 1 HETATM 3 O O2 MPD . . . E 4 -15.661 -11.58 -25.466 1 85.39 ? O2 MPD 303 A 1 HETATM 4 C CM MPD . . . E 4 -13.301 -11.029 -25.454 1 93.6 ? CM MPD 303 A 1 HETATM 5 C C3 MPD . . . E 4 -14.283 -12.599 -27.194 1 84.84 ? C3 MPD 303 A 1 HETATM 6 C C4 MPD . . . E 4 -14.058 -13.919 -26.462 1 86.04 ? C4 MPD 303 A 1 HETATM 7 O O4 MPD . . . E 4 -15.328 -14.398 -26.018 1 83.11 ? O4 MPD 303 A 1 HETATM 8 C C5 MPD . . . E 4 -13.384 -14.947 -27.35 1 79.61 ? C5 MPD 303 A 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 583 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 8 #