data_9BL5 # _model_server_result.job_id ap_-kfTgCPNIqrUEC_51Wg _model_server_result.datetime_utc '2024-11-19 22:26:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9bl5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 9BL5 # _exptl.entry_id 9BL5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 5 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 93.444 _cell.angle_beta 100.673 _cell.angle_gamma 109.966 _cell.entry_id 9BL5 _cell.length_a 52.437 _cell.length_b 62.119 _cell.length_c 67 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9BL5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall 'P 1' _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 101 A CYS 101 1_555 A SG CYS 164 A CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? disulf ? disulf2 A SG CYS 203 A CYS 203 1_555 A SG CYS 259 A CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf3 B SG CYS 26 B CYS 25 1_555 B SG CYS 81 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 D SG CYS 45 G CYS 28 1_555 D SG CYS 91 G CYS 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf5 D SG CYS 140 G CYS 123 1_555 D SG CYS 191 G CYS 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf6 D SG CYS 240 G CYS 223 1_555 D SG CYS 289 G CYS 272 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? covale ? covale1 D ND2 ASN 88 G ASN 71 1_555 E C1 NAG . G NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale2 D ND2 ASN 175 G ASN 158 1_555 F C1 NAG . G NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 9BL5 _atom_sites.fract_transf_matrix[1][1] 0.019071 _atom_sites.fract_transf_matrix[1][2] 0.006928 _atom_sites.fract_transf_matrix[1][3] 0.00456 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017128 _atom_sites.fract_transf_matrix[2][3] 0.002307 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015325 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 NAG G 1 301 301 NAG NAG . F 5 NAG G 1 302 302 NAG NAG . G 6 HOH A 1 301 301 HOH HOH . G 6 HOH A 2 302 302 HOH HOH . G 6 HOH A 3 303 303 HOH HOH . G 6 HOH A 4 304 304 HOH HOH . G 6 HOH A 5 305 305 HOH HOH . G 6 HOH A 6 306 306 HOH HOH . G 6 HOH A 7 307 307 HOH HOH . G 6 HOH A 8 308 308 HOH HOH . G 6 HOH A 9 309 309 HOH HOH . G 6 HOH A 10 310 310 HOH HOH . G 6 HOH A 11 311 311 HOH HOH . G 6 HOH A 12 312 312 HOH HOH . G 6 HOH A 13 313 313 HOH HOH . G 6 HOH A 14 314 314 HOH HOH . G 6 HOH A 15 315 315 HOH HOH . G 6 HOH A 16 316 316 HOH HOH . G 6 HOH A 17 317 317 HOH HOH . G 6 HOH A 18 318 318 HOH HOH . G 6 HOH A 19 319 319 HOH HOH . G 6 HOH A 20 320 320 HOH HOH . G 6 HOH A 21 321 321 HOH HOH . G 6 HOH A 22 322 322 HOH HOH . G 6 HOH A 23 323 323 HOH HOH . G 6 HOH A 24 324 324 HOH HOH . G 6 HOH A 25 325 325 HOH HOH . G 6 HOH A 26 326 326 HOH HOH . G 6 HOH A 27 327 327 HOH HOH . G 6 HOH A 28 328 328 HOH HOH . G 6 HOH A 29 329 329 HOH HOH . G 6 HOH A 30 330 330 HOH HOH . G 6 HOH A 31 331 331 HOH HOH . G 6 HOH A 32 332 332 HOH HOH . G 6 HOH A 33 333 333 HOH HOH . G 6 HOH A 34 334 334 HOH HOH . G 6 HOH A 35 335 335 HOH HOH . G 6 HOH A 36 336 336 HOH HOH . G 6 HOH A 37 337 337 HOH HOH . G 6 HOH A 38 338 338 HOH HOH . G 6 HOH A 39 339 339 HOH HOH . G 6 HOH A 40 340 340 HOH HOH . G 6 HOH A 41 341 341 HOH HOH . G 6 HOH A 42 342 342 HOH HOH . G 6 HOH A 43 343 343 HOH HOH . G 6 HOH A 44 344 344 HOH HOH . G 6 HOH A 45 345 345 HOH HOH . G 6 HOH A 46 346 346 HOH HOH . G 6 HOH A 47 347 347 HOH HOH . G 6 HOH A 48 348 349 HOH HOH . G 6 HOH A 49 349 348 HOH HOH . G 6 HOH A 50 350 350 HOH HOH . G 6 HOH A 51 351 351 HOH HOH . G 6 HOH A 52 352 352 HOH HOH . G 6 HOH A 53 353 353 HOH HOH . G 6 HOH A 54 354 354 HOH HOH . G 6 HOH A 55 355 355 HOH HOH . G 6 HOH A 56 356 356 HOH HOH . G 6 HOH A 57 357 357 HOH HOH . G 6 HOH A 58 358 358 HOH HOH . G 6 HOH A 59 359 359 HOH HOH . G 6 HOH A 60 360 360 HOH HOH . G 6 HOH A 61 361 361 HOH HOH . G 6 HOH A 62 362 362 HOH HOH . G 6 HOH A 63 363 363 HOH HOH . G 6 HOH A 64 364 364 HOH HOH . G 6 HOH A 65 365 365 HOH HOH . G 6 HOH A 66 366 366 HOH HOH . G 6 HOH A 67 367 367 HOH HOH . G 6 HOH A 68 368 368 HOH HOH . G 6 HOH A 69 369 369 HOH HOH . G 6 HOH A 70 370 370 HOH HOH . G 6 HOH A 71 371 371 HOH HOH . G 6 HOH A 72 372 372 HOH HOH . G 6 HOH A 73 373 373 HOH HOH . G 6 HOH A 74 374 374 HOH HOH . G 6 HOH A 75 375 375 HOH HOH . G 6 HOH A 76 376 376 HOH HOH . G 6 HOH A 77 377 377 HOH HOH . G 6 HOH A 78 378 378 HOH HOH . G 6 HOH A 79 379 379 HOH HOH . G 6 HOH A 80 380 380 HOH HOH . G 6 HOH A 81 381 381 HOH HOH . G 6 HOH A 82 382 382 HOH HOH . G 6 HOH A 83 383 383 HOH HOH . G 6 HOH A 84 384 384 HOH HOH . G 6 HOH A 85 385 385 HOH HOH . G 6 HOH A 86 386 386 HOH HOH . G 6 HOH A 87 387 387 HOH HOH . G 6 HOH A 88 388 388 HOH HOH . G 6 HOH A 89 389 389 HOH HOH . G 6 HOH A 90 390 390 HOH HOH . G 6 HOH A 91 391 391 HOH HOH . G 6 HOH A 92 392 392 HOH HOH . G 6 HOH A 93 393 393 HOH HOH . G 6 HOH A 94 394 394 HOH HOH . H 6 HOH B 1 101 101 HOH HOH . H 6 HOH B 2 102 102 HOH HOH . H 6 HOH B 3 103 103 HOH HOH . H 6 HOH B 4 104 104 HOH HOH . H 6 HOH B 5 105 105 HOH HOH . H 6 HOH B 6 106 106 HOH HOH . H 6 HOH B 7 107 107 HOH HOH . H 6 HOH B 8 108 108 HOH HOH . H 6 HOH B 9 109 109 HOH HOH . H 6 HOH B 10 110 110 HOH HOH . H 6 HOH B 11 111 111 HOH HOH . I 6 HOH C 1 101 101 HOH HOH . I 6 HOH C 2 102 102 HOH HOH . I 6 HOH C 3 103 103 HOH HOH . I 6 HOH C 4 104 104 HOH HOH . I 6 HOH C 5 105 105 HOH HOH . I 6 HOH C 6 106 106 HOH HOH . J 6 HOH G 1 401 401 HOH HOH . J 6 HOH G 2 402 402 HOH HOH . J 6 HOH G 3 403 403 HOH HOH . J 6 HOH G 4 404 404 HOH HOH . J 6 HOH G 5 405 405 HOH HOH . J 6 HOH G 6 406 406 HOH HOH . J 6 HOH G 7 407 407 HOH HOH . J 6 HOH G 8 408 408 HOH HOH . J 6 HOH G 9 409 409 HOH HOH . J 6 HOH G 10 410 410 HOH HOH . J 6 HOH G 11 411 411 HOH HOH . J 6 HOH G 12 412 412 HOH HOH . J 6 HOH G 13 413 413 HOH HOH . J 6 HOH G 14 414 414 HOH HOH . J 6 HOH G 15 415 415 HOH HOH . J 6 HOH G 16 416 416 HOH HOH . J 6 HOH G 17 417 417 HOH HOH . J 6 HOH G 18 418 418 HOH HOH . J 6 HOH G 19 419 419 HOH HOH . J 6 HOH G 20 420 420 HOH HOH . J 6 HOH G 21 421 421 HOH HOH . J 6 HOH G 22 422 422 HOH HOH . J 6 HOH G 23 423 423 HOH HOH . J 6 HOH G 24 424 424 HOH HOH . J 6 HOH G 25 425 425 HOH HOH . J 6 HOH G 26 426 426 HOH HOH . J 6 HOH G 27 427 427 HOH HOH . J 6 HOH G 28 428 428 HOH HOH . J 6 HOH G 29 429 429 HOH HOH . J 6 HOH G 30 430 430 HOH HOH . J 6 HOH G 31 431 431 HOH HOH . J 6 HOH G 32 432 432 HOH HOH . J 6 HOH G 33 433 433 HOH HOH . J 6 HOH G 34 434 434 HOH HOH . J 6 HOH G 35 435 435 HOH HOH . J 6 HOH G 36 436 436 HOH HOH . J 6 HOH G 37 437 437 HOH HOH . J 6 HOH G 38 438 438 HOH HOH . J 6 HOH G 39 439 439 HOH HOH . J 6 HOH G 40 440 440 HOH HOH . J 6 HOH G 41 441 441 HOH HOH . J 6 HOH G 42 442 442 HOH HOH . J 6 HOH G 43 443 443 HOH HOH . J 6 HOH G 44 444 444 HOH HOH . J 6 HOH G 45 445 445 HOH HOH . J 6 HOH G 46 446 446 HOH HOH . J 6 HOH G 47 447 447 HOH HOH . J 6 HOH G 48 448 448 HOH HOH . J 6 HOH G 49 449 449 HOH HOH . J 6 HOH G 50 450 450 HOH HOH . J 6 HOH G 51 451 451 HOH HOH . J 6 HOH G 52 452 452 HOH HOH . J 6 HOH G 53 453 453 HOH HOH . J 6 HOH G 54 454 454 HOH HOH . J 6 HOH G 55 455 455 HOH HOH . J 6 HOH G 56 456 456 HOH HOH . J 6 HOH G 57 457 457 HOH HOH . J 6 HOH G 58 458 458 HOH HOH . J 6 HOH G 59 459 459 HOH HOH . J 6 HOH G 60 460 460 HOH HOH . J 6 HOH G 61 461 461 HOH HOH . J 6 HOH G 62 462 462 HOH HOH . J 6 HOH G 63 463 463 HOH HOH . J 6 HOH G 64 464 464 HOH HOH . J 6 HOH G 65 465 465 HOH HOH . J 6 HOH G 66 466 466 HOH HOH . J 6 HOH G 67 467 467 HOH HOH . J 6 HOH G 68 468 468 HOH HOH . J 6 HOH G 69 469 469 HOH HOH . J 6 HOH G 70 470 470 HOH HOH . J 6 HOH G 71 471 471 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . E 5 15.871 37.388 -12.132 1 67.94 ? C1 NAG 301 G 1 HETATM 2 C C2 NAG . . . E 5 16.143 37.13 -13.618 1 67.78 ? C2 NAG 301 G 1 HETATM 3 C C3 NAG . . . E 5 16.693 35.723 -13.815 1 71.04 ? C3 NAG 301 G 1 HETATM 4 C C4 NAG . . . E 5 17.963 35.551 -12.995 1 69.04 ? C4 NAG 301 G 1 HETATM 5 C C5 NAG . . . E 5 17.649 35.801 -11.525 1 69.19 ? C5 NAG 301 G 1 HETATM 6 C C6 NAG . . . E 5 18.877 35.742 -10.647 1 67.17 ? C6 NAG 301 G 1 HETATM 7 C C7 NAG . . . E 5 14.786 38.414 -15.21 1 67.87 ? C7 NAG 301 G 1 HETATM 8 C C8 NAG . . . E 5 13.508 38.46 -16.002 1 66.57 ? C8 NAG 301 G 1 HETATM 9 N N2 NAG . . . E 5 14.959 37.335 -14.436 1 65.27 ? N2 NAG 301 G 1 HETATM 10 O O3 NAG . . . E 5 16.966 35.506 -15.195 1 73.35 ? O3 NAG 301 G 1 HETATM 11 O O4 NAG . . . E 5 18.491 34.241 -13.158 1 71.85 ? O4 NAG 301 G 1 HETATM 12 O O5 NAG . . . E 5 17.078 37.112 -11.358 1 71.26 ? O5 NAG 301 G 1 HETATM 13 O O6 NAG . . . E 5 18.543 35.84 -9.269 1 66.21 ? O6 NAG 301 G 1 HETATM 14 O O7 NAG . . . E 5 15.611 39.328 -15.251 1 68.54 ? O7 NAG 301 G 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 232 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 14 #