data_9BNI # _model_server_result.job_id D3niKe4dh2_M99sFeJ6dEg _model_server_result.datetime_utc '2024-10-18 05:21:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9bni # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":103}' # _entry.id 9BNI # _exptl.entry_id 9BNI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 282.331 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEXAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9BNI _cell.length_a 45.518 _cell.length_b 45.518 _cell.length_c 45.518 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9BNI _symmetry.cell_setting ? _symmetry.Int_Tables_number 199 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 21 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_656 -z+1,x+1/2,-y+3/2 0 0 -1 1 0 0 0 -1 0 45.518 22.759 68.277 3 'crystal symmetry operation' 11_466 y-1/2,-z+3/2,-x+1 0 1 0 0 0 -1 -1 0 0 -22.759 68.277 45.518 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C HIS 12 A HIS 12 1_555 A N NH2 13 A NH2 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? metalc ? metalc1 A N SER 1 A SER 1 1_555 C CU CU . A CU 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc2 A OG SER 1 A SER 1 1_555 C CU CU . A CU 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? metalc ? metalc3 A NE2 HIS 5 A HIS 5 1_555 C CU CU . A CU 102 16_566 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? metalc ? metalc4 A ND1 HIS 12 A HIS 12 1_555 C CU CU . A CU 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.948 ? metalc ? metalc5 C CU CU . A CU 102 1_555 F O1 SO4 . A SO4 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? # _chem_comp.formula 'C12 H26 O7' _chem_comp.formula_weight 282.331 _chem_comp.id P6G _chem_comp.mon_nstd_flag . _chem_comp.name 'HEXAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'POLYETHYLENE GLYCOL PEG400' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C2 P6G sing 102 n n O1 H1 P6G sing 103 n n C2 C3 P6G sing 104 n n C2 H21 P6G sing 105 n n C2 H22 P6G sing 106 n n C3 O4 P6G sing 107 n n C3 H31 P6G sing 108 n n C3 H32 P6G sing 109 n n O4 C5 P6G sing 110 n n C5 C6 P6G sing 111 n n C5 H51 P6G sing 112 n n C5 H52 P6G sing 113 n n C6 O7 P6G sing 114 n n C6 H61 P6G sing 115 n n C6 H62 P6G sing 116 n n O7 C8 P6G sing 117 n n C8 C9 P6G sing 118 n n C8 H81 P6G sing 119 n n C8 H82 P6G sing 120 n n C9 O10 P6G sing 121 n n C9 H91 P6G sing 122 n n C9 H92 P6G sing 123 n n O10 C11 P6G sing 124 n n C11 C12 P6G sing 125 n n C11 H111 P6G sing 126 n n C11 H112 P6G sing 127 n n C12 O13 P6G sing 128 n n C12 H121 P6G sing 129 n n C12 H122 P6G sing 130 n n O13 C14 P6G sing 131 n n C14 C15 P6G sing 132 n n C14 H141 P6G sing 133 n n C14 H142 P6G sing 134 n n C15 O16 P6G sing 135 n n C15 H151 P6G sing 136 n n C15 H152 P6G sing 137 n n O16 C17 P6G sing 138 n n C17 C18 P6G sing 139 n n C17 H171 P6G sing 140 n n C17 H172 P6G sing 141 n n C18 O19 P6G sing 142 n n C18 H181 P6G sing 143 n n C18 H182 P6G sing 144 n n O19 H19 P6G sing 145 n n # _atom_sites.entry_id 9BNI _atom_sites.fract_transf_matrix[1][1] 0.021969 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021969 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021969 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL A 1 101 102 CL CL . C 3 CU A 1 102 103 CU CU . D 4 P6G A 1 103 104 P6G P6G . E 5 SO4 A 1 104 105 SO4 SO4 . F 5 SO4 A 1 105 106 SO4 SO4 . G 5 SO4 A 1 106 107 SO4 SO4 . H 6 HOH A 1 201 201 HOH HOH . H 6 HOH A 2 202 202 HOH HOH . H 6 HOH A 3 203 203 HOH HOH . H 6 HOH A 4 204 204 HOH HOH . H 6 HOH A 5 205 205 HOH HOH . H 6 HOH A 6 206 206 HOH HOH . H 6 HOH A 7 207 207 HOH HOH . H 6 HOH A 8 208 208 HOH HOH . H 6 HOH A 9 209 209 HOH HOH . H 6 HOH A 10 210 210 HOH HOH . H 6 HOH A 11 211 211 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 P6G . . . D 4 11.38 41.455 22.759 1 35.27 ? O1 P6G 103 A 1 HETATM 2 C C2 P6G . . . D 4 12.707 41.287 22.28 1 36.85 ? C2 P6G 103 A 1 HETATM 3 C C3 P6G . . . D 4 13.071 40.165 23.191 1 37.29 ? C3 P6G 103 A 1 HETATM 4 O O4 P6G . . . D 4 14.485 39.971 23.189 1 41.79 ? O4 P6G 103 A 1 HETATM 5 C C5 P6G . . . D 4 14.869 38.855 23.981 1 43.68 ? C5 P6G 103 A 1 HETATM 6 C C6 P6G . . . D 4 14.915 39.225 25.427 1 46.47 ? C6 P6G 103 A 1 HETATM 7 O O7 P6G . . . D 4 15.596 38.219 26.162 1 51.83 ? O7 P6G 103 A 1 HETATM 8 C C8 P6G . . . D 4 14.823 37.031 26.307 1 55.24 ? C8 P6G 103 A 1 HETATM 9 C C9 P6G . . . D 4 15.482 35.859 25.648 1 57.49 ? C9 P6G 103 A 1 HETATM 10 O O10 P6G . . . D 4 14.588 34.756 25.616 1 59.7 ? O10 P6G 103 A 1 HETATM 11 C C11 P6G . . . D 4 15.155 33.575 25.065 1 62.25 ? C11 P6G 103 A 1 HETATM 12 C C12 P6G . . . D 4 14.277 32.402 25.386 1 65.56 ? C12 P6G 103 A 1 HETATM 13 O O13 P6G . . . D 4 14.682 31.221 24.68 1 67.79 ? O13 P6G 103 A 1 HETATM 14 C C14 P6G . . . D 4 14.558 31.324 23.264 1 67.86 ? C14 P6G 103 A 1 HETATM 15 C C15 P6G . . . D 4 13.814 30.148 22.728 1 67.32 ? C15 P6G 103 A 1 HETATM 16 O O16 P6G . . . D 4 14.709 29.062 22.533 1 67.64 ? O16 P6G 103 A 1 HETATM 17 C C17 P6G . . . D 4 14.396 27.944 23.352 1 68.1 ? C17 P6G 103 A 1 HETATM 18 C C18 P6G . . . D 4 15.175 26.742 22.912 1 68.11 ? C18 P6G 103 A 1 HETATM 19 O O19 P6G . . . D 4 14.726 26.253 21.66 1 68.48 ? O19 P6G 103 A 1 HETATM 20 H H21 P6G . . . D 4 12.876 41.029 21.361 1 44.23 ? H21 P6G 103 A 1 HETATM 21 H H22 P6G . . . D 4 13.237 42.067 22.504 1 44.23 ? H22 P6G 103 A 1 HETATM 22 H H31 P6G . . . D 4 12.778 40.375 24.092 1 44.75 ? H31 P6G 103 A 1 HETATM 23 H H32 P6G . . . D 4 12.635 39.353 22.891 1 44.75 ? H32 P6G 103 A 1 HETATM 24 H H51 P6G . . . D 4 14.227 38.139 23.855 1 52.43 ? H51 P6G 103 A 1 HETATM 25 H H52 P6G . . . D 4 15.748 38.554 23.701 1 52.43 ? H52 P6G 103 A 1 HETATM 26 H H61 P6G . . . D 4 15.381 40.069 25.529 1 55.78 ? H61 P6G 103 A 1 HETATM 27 H H62 P6G . . . D 4 14.01 39.313 25.765 1 55.78 ? H62 P6G 103 A 1 HETATM 28 H H81 P6G . . . D 4 14.715 36.84 27.252 1 66.3 ? H81 P6G 103 A 1 HETATM 29 H H82 P6G . . . D 4 13.953 37.171 25.903 1 66.3 ? H82 P6G 103 A 1 HETATM 30 H H91 P6G . . . D 4 15.73 36.097 24.741 1 69 ? H91 P6G 103 A 1 HETATM 31 H H92 P6G . . . D 4 16.277 35.614 26.147 1 69 ? H92 P6G 103 A 1 HETATM 32 H H111 P6G . . . D 4 15.228 33.67 24.103 1 74.7 ? H111 P6G 103 A 1 HETATM 33 H H112 P6G . . . D 4 16.037 33.432 25.444 1 74.7 ? H112 P6G 103 A 1 HETATM 34 H H121 P6G . . . D 4 14.321 32.228 26.34 1 78.67 ? H121 P6G 103 A 1 HETATM 35 H H122 P6G . . . D 4 13.364 32.617 25.139 1 78.67 ? H122 P6G 103 A 1 HETATM 36 H H141 P6G . . . D 4 14.076 32.137 23.043 1 81.44 ? H141 P6G 103 A 1 HETATM 37 H H142 P6G . . . D 4 15.442 31.354 22.866 1 81.44 ? H142 P6G 103 A 1 HETATM 38 H H151 P6G . . . D 4 13.124 29.887 23.358 1 80.79 ? H151 P6G 103 A 1 HETATM 39 H H152 P6G . . . D 4 13.405 30.383 21.88 1 80.79 ? H152 P6G 103 A 1 HETATM 40 H H171 P6G . . . D 4 14.619 28.149 24.273 1 81.73 ? H171 P6G 103 A 1 HETATM 41 H H172 P6G . . . D 4 13.448 27.752 23.283 1 81.73 ? H172 P6G 103 A 1 HETATM 42 H H181 P6G . . . D 4 16.111 26.985 22.837 1 81.74 ? H181 P6G 103 A 1 HETATM 43 H H182 P6G . . . D 4 15.074 26.043 23.577 1 81.74 ? H182 P6G 103 A 1 HETATM 44 H H19 P6G . . . D 4 15.073 26.641 20.988 1 82.19 ? H19 P6G 103 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 44 #