data_9BO0 # _model_server_result.job_id dLCQ6RB5kXz4nt0zHwY2pg _model_server_result.datetime_utc '2025-03-12 16:49:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9bo0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 9BO0 # _exptl.entry_id 9BO0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 565.379 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "(5P)-5-[(1P,3M,3'P)-3-{3-chloro-5-[(2-chlorophenyl)methoxy]-4-fluorophenyl}-2-oxo-2H-[1,3'-bipyridin]-5-yl]-1-methylpyrimidine-2,4(1H,3H)-dione" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9BO0 _cell.length_a 67.76 _cell.length_b 100.124 _cell.length_c 103.908 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9BO0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C28 H19 Cl2 F N4 O4' _chem_comp.formula_weight 565.379 _chem_comp.id XEK _chem_comp.mon_nstd_flag . _chem_comp.name "(5P)-5-[(1P,3M,3'P)-3-{3-chloro-5-[(2-chlorophenyl)methoxy]-4-fluorophenyl}-2-oxo-2H-[1,3'-bipyridin]-5-yl]-1-methylpyrimidine-2,4(1H,3H)-dione" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 XEK doub 376 n n C1 C2 XEK sing 377 n n C1 N3 XEK sing 378 n n C2 C3 XEK sing 379 n n C2 C16 XEK doub 380 n n C3 C4 XEK doub 381 n y C3 C15 XEK sing 382 n y C4 C5 XEK sing 383 n y C5 CL1 XEK sing 384 n n C5 C6 XEK doub 385 n y C6 F1 XEK sing 386 n n C6 C7 XEK sing 387 n y C7 O2 XEK sing 388 n n C7 C15 XEK doub 389 n y O2 C8 XEK sing 390 n n C8 C9 XEK sing 391 n n C9 C10 XEK doub 392 n y C9 C14 XEK sing 393 n y C10 C11 XEK sing 394 n y C11 C12 XEK doub 395 n y C12 C13 XEK sing 396 n y C13 C14 XEK doub 397 n y C14 CL2 XEK sing 398 n n C16 C17 XEK sing 399 n n C17 C18 XEK sing 400 n n C17 C23 XEK doub 401 n n C18 C19 XEK sing 402 n n C18 C20 XEK doub 403 n n C19 N1 XEK sing 404 n n C19 O3 XEK doub 405 n n N1 C22 XEK sing 406 n n C20 N2 XEK sing 407 n n N2 C21 XEK sing 408 n n N2 C22 XEK sing 409 n n C22 O4 XEK doub 410 n n C23 N3 XEK sing 411 n n N3 C24 XEK sing 412 n n C24 C25 XEK doub 413 n y C24 C28 XEK sing 414 n y C25 C26 XEK sing 415 n y C26 C27 XEK doub 416 n y C27 N4 XEK sing 417 n y N4 C28 XEK doub 418 n y C4 H1 XEK sing 419 n n C8 H2 XEK sing 420 n n C8 H3 XEK sing 421 n n C10 H4 XEK sing 422 n n C11 H5 XEK sing 423 n n C12 H6 XEK sing 424 n n C13 H7 XEK sing 425 n n C15 H8 XEK sing 426 n n C21 H13 XEK sing 427 n n C21 H14 XEK sing 428 n n C21 H12 XEK sing 429 n n C25 H16 XEK sing 430 n n C27 H18 XEK sing 431 n n C16 H9 XEK sing 432 n n C20 H11 XEK sing 433 n n C23 H15 XEK sing 434 n n C26 H17 XEK sing 435 n n C28 H19 XEK sing 436 n n N1 H10 XEK sing 437 n n # _atom_sites.entry_id 9BO0 _atom_sites.fract_transf_matrix[1][1] 0.014758 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009988 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009624 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 XEK A 1 401 1 XEK M61 . D 3 HOH A 1 501 54 HOH HOH . D 3 HOH A 2 502 50 HOH HOH . D 3 HOH A 3 503 18 HOH HOH . D 3 HOH A 4 504 71 HOH HOH . D 3 HOH A 5 505 67 HOH HOH . D 3 HOH A 6 506 61 HOH HOH . D 3 HOH A 7 507 55 HOH HOH . D 3 HOH A 8 508 10 HOH HOH . D 3 HOH A 9 509 7 HOH HOH . D 3 HOH A 10 510 92 HOH HOH . D 3 HOH A 11 511 58 HOH HOH . D 3 HOH A 12 512 27 HOH HOH . D 3 HOH A 13 513 12 HOH HOH . D 3 HOH A 14 514 25 HOH HOH . D 3 HOH A 15 515 76 HOH HOH . D 3 HOH A 16 516 116 HOH HOH . D 3 HOH A 17 517 75 HOH HOH . D 3 HOH A 18 518 72 HOH HOH . D 3 HOH A 19 519 127 HOH HOH . D 3 HOH A 20 520 62 HOH HOH . D 3 HOH A 21 521 2 HOH HOH . D 3 HOH A 22 522 43 HOH HOH . D 3 HOH A 23 523 3 HOH HOH . D 3 HOH A 24 524 39 HOH HOH . D 3 HOH A 25 525 22 HOH HOH . D 3 HOH A 26 526 6 HOH HOH . D 3 HOH A 27 527 16 HOH HOH . D 3 HOH A 28 528 187 HOH HOH . D 3 HOH A 29 529 96 HOH HOH . D 3 HOH A 30 530 15 HOH HOH . D 3 HOH A 31 531 13 HOH HOH . D 3 HOH A 32 532 57 HOH HOH . D 3 HOH A 33 533 100 HOH HOH . D 3 HOH A 34 534 32 HOH HOH . D 3 HOH A 35 535 65 HOH HOH . D 3 HOH A 36 536 91 HOH HOH . D 3 HOH A 37 537 88 HOH HOH . D 3 HOH A 38 538 68 HOH HOH . D 3 HOH A 39 539 103 HOH HOH . D 3 HOH A 40 540 140 HOH HOH . D 3 HOH A 41 541 90 HOH HOH . D 3 HOH A 42 542 5 HOH HOH . D 3 HOH A 43 543 73 HOH HOH . D 3 HOH A 44 544 29 HOH HOH . D 3 HOH A 45 545 129 HOH HOH . D 3 HOH A 46 546 37 HOH HOH . D 3 HOH A 47 547 86 HOH HOH . D 3 HOH A 48 548 1 HOH HOH . D 3 HOH A 49 549 131 HOH HOH . D 3 HOH A 50 550 84 HOH HOH . D 3 HOH A 51 551 82 HOH HOH . D 3 HOH A 52 552 9 HOH HOH . D 3 HOH A 53 553 186 HOH HOH . D 3 HOH A 54 554 105 HOH HOH . D 3 HOH A 55 555 189 HOH HOH . D 3 HOH A 56 556 98 HOH HOH . D 3 HOH A 57 557 153 HOH HOH . D 3 HOH A 58 558 8 HOH HOH . D 3 HOH A 59 559 112 HOH HOH . D 3 HOH A 60 560 159 HOH HOH . D 3 HOH A 61 561 35 HOH HOH . D 3 HOH A 62 562 83 HOH HOH . D 3 HOH A 63 563 177 HOH HOH . D 3 HOH A 64 564 154 HOH HOH . D 3 HOH A 65 565 190 HOH HOH . D 3 HOH A 66 566 181 HOH HOH . D 3 HOH A 67 567 52 HOH HOH . D 3 HOH A 68 568 109 HOH HOH . D 3 HOH A 69 569 93 HOH HOH . D 3 HOH A 70 570 149 HOH HOH . D 3 HOH A 71 571 178 HOH HOH . D 3 HOH A 72 572 142 HOH HOH . D 3 HOH A 73 573 80 HOH HOH . D 3 HOH A 74 574 179 HOH HOH . D 3 HOH A 75 575 182 HOH HOH . D 3 HOH A 76 576 151 HOH HOH . D 3 HOH A 77 577 185 HOH HOH . D 3 HOH A 78 578 180 HOH HOH . D 3 HOH A 79 579 104 HOH HOH . D 3 HOH A 80 580 95 HOH HOH . D 3 HOH A 81 581 78 HOH HOH . D 3 HOH A 82 582 38 HOH HOH . D 3 HOH A 83 583 64 HOH HOH . D 3 HOH A 84 584 42 HOH HOH . D 3 HOH A 85 585 183 HOH HOH . E 3 HOH B 1 401 46 HOH HOH . E 3 HOH B 2 402 17 HOH HOH . E 3 HOH B 3 403 51 HOH HOH . E 3 HOH B 4 404 28 HOH HOH . E 3 HOH B 5 405 48 HOH HOH . E 3 HOH B 6 406 19 HOH HOH . E 3 HOH B 7 407 85 HOH HOH . E 3 HOH B 8 408 20 HOH HOH . E 3 HOH B 9 409 44 HOH HOH . E 3 HOH B 10 410 74 HOH HOH . E 3 HOH B 11 411 36 HOH HOH . E 3 HOH B 12 412 53 HOH HOH . E 3 HOH B 13 413 34 HOH HOH . E 3 HOH B 14 414 33 HOH HOH . E 3 HOH B 15 415 21 HOH HOH . E 3 HOH B 16 416 49 HOH HOH . E 3 HOH B 17 417 120 HOH HOH . E 3 HOH B 18 418 14 HOH HOH . E 3 HOH B 19 419 111 HOH HOH . E 3 HOH B 20 420 30 HOH HOH . E 3 HOH B 21 421 69 HOH HOH . E 3 HOH B 22 422 156 HOH HOH . E 3 HOH B 23 423 24 HOH HOH . E 3 HOH B 24 424 63 HOH HOH . E 3 HOH B 25 425 101 HOH HOH . E 3 HOH B 26 426 60 HOH HOH . E 3 HOH B 27 427 23 HOH HOH . E 3 HOH B 28 428 47 HOH HOH . E 3 HOH B 29 429 31 HOH HOH . E 3 HOH B 30 430 113 HOH HOH . E 3 HOH B 31 431 11 HOH HOH . E 3 HOH B 32 432 26 HOH HOH . E 3 HOH B 33 433 163 HOH HOH . E 3 HOH B 34 434 4 HOH HOH . E 3 HOH B 35 435 66 HOH HOH . E 3 HOH B 36 436 145 HOH HOH . E 3 HOH B 37 437 108 HOH HOH . E 3 HOH B 38 438 135 HOH HOH . E 3 HOH B 39 439 70 HOH HOH . E 3 HOH B 40 440 184 HOH HOH . E 3 HOH B 41 441 147 HOH HOH . E 3 HOH B 42 442 40 HOH HOH . E 3 HOH B 43 443 56 HOH HOH . E 3 HOH B 44 444 139 HOH HOH . E 3 HOH B 45 445 41 HOH HOH . E 3 HOH B 46 446 106 HOH HOH . E 3 HOH B 47 447 192 HOH HOH . E 3 HOH B 48 448 146 HOH HOH . E 3 HOH B 49 449 188 HOH HOH . E 3 HOH B 50 450 115 HOH HOH . E 3 HOH B 51 451 172 HOH HOH . E 3 HOH B 52 452 137 HOH HOH . E 3 HOH B 53 453 45 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 XEK . . . C 2 -20.096 -4.75 -26.899 1 41.91 ? C1 XEK 401 A 1 HETATM 2 C C2 XEK . . . C 2 -21.412 -4.489 -27.253 1 46.14 ? C2 XEK 401 A 1 HETATM 3 C C3 XEK . . . C 2 -21.814 -4.327 -28.721 1 46.64 ? C3 XEK 401 A 1 HETATM 4 C C4 XEK . . . C 2 -22.335 -3.114 -29.148 1 47.33 ? C4 XEK 401 A 1 HETATM 5 C C5 XEK . . . C 2 -22.707 -2.947 -30.474 1 52.48 ? C5 XEK 401 A 1 HETATM 6 C C6 XEK . . . C 2 -22.559 -3.994 -31.377 1 57 ? C6 XEK 401 A 1 HETATM 7 C C7 XEK . . . C 2 -22.041 -5.213 -30.952 1 59.53 ? C7 XEK 401 A 1 HETATM 8 C C8 XEK . . . C 2 -20.535 -6.547 -32.162 1 68.72 ? C8 XEK 401 A 1 HETATM 9 C C9 XEK . . . C 2 -20.433 -7.463 -33.387 1 69.5 ? C9 XEK 401 A 1 HETATM 10 C C10 XEK . . . C 2 -20.839 -8.79 -33.299 1 71.13 ? C10 XEK 401 A 1 HETATM 11 C C11 XEK . . . C 2 -20.744 -9.622 -34.41 1 76.83 ? C11 XEK 401 A 1 HETATM 12 C C12 XEK . . . C 2 -20.24 -9.132 -35.609 1 74.97 ? C12 XEK 401 A 1 HETATM 13 C C13 XEK . . . C 2 -19.83 -7.808 -35.698 1 73.04 ? C13 XEK 401 A 1 HETATM 14 C C14 XEK . . . C 2 -19.925 -6.977 -34.589 1 71.68 ? C14 XEK 401 A 1 HETATM 15 C C15 XEK . . . C 2 -21.668 -5.378 -29.621 1 51.24 ? C15 XEK 401 A 1 HETATM 16 C C17 XEK . . . C 2 -22.025 -4.51 -24.934 1 49.78 ? C17 XEK 401 A 1 HETATM 17 C C21 XEK . . . C 2 -26.735 -5.075 -23.626 1 63.99 ? C21 XEK 401 A 1 HETATM 18 C C22 XEK . . . C 2 -25.14 -4.145 -22.069 1 59.09 ? C22 XEK 401 A 1 HETATM 19 C C24 XEK . . . C 2 -18.397 -5.159 -25.252 1 42.58 ? C24 XEK 401 A 1 HETATM 20 C C25 XEK . . . C 2 -18.013 -6.434 -24.853 1 46.22 ? C25 XEK 401 A 1 HETATM 21 C C27 XEK . . . C 2 -15.785 -5.59 -24.613 1 35.81 ? C27 XEK 401 A 1 HETATM 22 C C16 XEK . . . C 2 -22.382 -4.367 -26.269 1 54.68 ? C16 XEK 401 A 1 HETATM 23 C C18 XEK . . . C 2 -23.121 -4.369 -23.871 1 54.91 ? C18 XEK 401 A 1 HETATM 24 C C19 XEK . . . C 2 -22.893 -3.843 -22.601 1 48.81 ? C19 XEK 401 A 1 HETATM 25 C C20 XEK . . . C 2 -24.414 -4.766 -24.185 1 57.65 ? C20 XEK 401 A 1 HETATM 26 C C23 XEK . . . C 2 -20.693 -4.779 -24.636 1 45.33 ? C23 XEK 401 A 1 HETATM 27 C C26 XEK . . . C 2 -16.677 -6.651 -24.527 1 42.72 ? C26 XEK 401 A 1 HETATM 28 C C28 XEK . . . C 2 -17.457 -4.137 -25.32 1 40.46 ? C28 XEK 401 A 1 HETATM 29 F F1 XEK . . . C 2 -22.925 -3.819 -32.677 1 51.22 ? F1 XEK 401 A 1 HETATM 30 N N1 XEK . . . C 2 -23.907 -3.749 -21.735 1 51.49 ? N1 XEK 401 A 1 HETATM 31 N N2 XEK . . . C 2 -25.389 -4.649 -23.282 1 63.57 ? N2 XEK 401 A 1 HETATM 32 N N3 XEK . . . C 2 -19.778 -4.886 -25.606 1 50.73 ? N3 XEK 401 A 1 HETATM 33 N N4 XEK . . . C 2 -16.182 -4.374 -25.001 1 36.36 ? N4 XEK 401 A 1 HETATM 34 O O1 XEK . . . C 2 -19.118 -4.876 -27.894 1 41.73 ? O1 XEK 401 A 1 HETATM 35 O O2 XEK . . . C 2 -21.884 -6.273 -31.866 1 67.52 ? O2 XEK 401 A 1 HETATM 36 O O3 XEK . . . C 2 -21.619 -3.412 -22.213 1 47.63 ? O3 XEK 401 A 1 HETATM 37 O O4 XEK . . . C 2 -26.021 -4.051 -21.281 1 62.37 ? O4 XEK 401 A 1 HETATM 38 CL CL1 XEK . . . C 2 -23.368 -1.378 -31.009 1 60.49 ? CL1 XEK 401 A 1 HETATM 39 CL CL2 XEK . . . C 2 -19.393 -5.281 -34.723 1 69.89 ? CL2 XEK 401 A 1 # _model_server_stats.io_time_ms 105 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 335 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 39 #