data_9BPY
#
_model_server_result.job_id            K5lGP3SI8zMWet6ctj9f8A 
_model_server_result.datetime_utc      '2025-06-22 17:31:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9bpy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":1102}' 
#
_entry.id    9BPY 
#
_exptl.entry_id    9BPY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              662.46 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            CARBA-NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         98.49 
_cell.angle_beta          105.16 
_cell.angle_gamma         104.8 
_cell.entry_id            9BPY 
_cell.length_a            44.664 
_cell.length_b            74.142 
_cell.length_c            85.182 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9BPY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,J 1 1 
B,G,K 2 1 
C,H,L 3 1 
D,I,M 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C22 H30 N7 O13 P2 1' 
_chem_comp.formula_weight    662.46 
_chem_comp.id                CNA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              CARBA-NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O3B C3B CNA sing 70 n n 
O2B C2B CNA sing 71 n n 
C3B C2B CNA sing 72 n n 
C3B C4B CNA sing 73 n n 
C2B C1B CNA sing 74 n n 
N3A C2A CNA doub 75 n y 
N3A C4A CNA sing 76 n y 
C2A N1A CNA sing 77 n y 
C1B N9A CNA sing 78 n n 
C1B O4B CNA sing 79 n n 
C4B O4B CNA sing 80 n n 
C4B C5B CNA sing 81 n n 
C4A N9A CNA sing 82 n y 
C4A C5A CNA doub 83 n y 
N9A C8A CNA sing 84 n y 
N1A C6A CNA doub 85 n y 
O2A PA CNA doub 86 n n 
O5B C5B CNA sing 87 n n 
O5B PA CNA sing 88 n n 
C5A C6A CNA sing 89 n y 
C5A N7A CNA sing 90 n y 
C6A N6A CNA sing 91 n n 
C8A N7A CNA doub 92 n y 
PA O3 CNA sing 93 n n 
PA O1A CNA sing 94 n n 
O3 PN CNA sing 95 n n 
O1N PN CNA doub 96 n n 
PN O2N CNA sing 97 n n 
PN O5D CNA sing 98 n n 
C5D O5D CNA sing 99 n n 
C5D C4D CNA sing 100 n n 
C3D O3D CNA sing 101 n n 
C3D C4D CNA sing 102 n n 
C3D C2D CNA sing 103 n n 
C4D C4' CNA sing 104 n n 
O2D C2D CNA sing 105 n n 
C2D C1D CNA sing 106 n n 
C4' C1D CNA sing 107 n n 
C1D N1N CNA sing 108 n n 
N1N C6N CNA doub 109 n y 
N1N C2N CNA sing 110 n y 
C6N C5N CNA sing 111 n y 
C2N C3N CNA doub 112 n y 
C5N C4N CNA doub 113 n y 
C3N C4N CNA sing 114 n y 
C3N C7N CNA sing 115 n n 
N7N C7N CNA sing 116 n n 
C7N O7N CNA doub 117 n n 
O1A H1 CNA sing 118 n n 
C5B H2 CNA sing 119 n n 
C5B H3 CNA sing 120 n n 
C4B H4 CNA sing 121 n n 
C3B H5 CNA sing 122 n n 
O3B H6 CNA sing 123 n n 
C2B H7 CNA sing 124 n n 
O2B H8 CNA sing 125 n n 
C1B H9 CNA sing 126 n n 
C8A H10 CNA sing 127 n n 
N6A H11 CNA sing 128 n n 
N6A H12 CNA sing 129 n n 
C2A H13 CNA sing 130 n n 
O2N H14 CNA sing 131 n n 
C5D H15 CNA sing 132 n n 
C5D H16 CNA sing 133 n n 
C4D H17 CNA sing 134 n n 
C4' H18 CNA sing 135 n n 
C4' H19 CNA sing 136 n n 
C3D H20 CNA sing 137 n n 
O3D H21 CNA sing 138 n n 
C2D H22 CNA sing 139 n n 
O2D H23 CNA sing 140 n n 
C1D H24 CNA sing 141 n n 
C2N H25 CNA sing 142 n n 
N7N H26 CNA sing 143 n n 
N7N H27 CNA sing 144 n n 
C4N H28 CNA sing 145 n n 
C5N H29 CNA sing 146 n n 
C6N H30 CNA sing 147 n n 
#
_atom_sites.entry_id                     9BPY 
_atom_sites.fract_transf_matrix[1][1]    0.022389 
_atom_sites.fract_transf_matrix[1][2]    0.005916 
_atom_sites.fract_transf_matrix[1][3]    0.00763 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01395 
_atom_sites.fract_transf_matrix[2][3]    0.003294 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012497 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 DQV A 1 1101 1101 DQV DQV . 
F 3 CNA A 1 1102 1102 CNA CNA . 
G 2 DQV B 1 1101 1101 DQV DQV . 
H 2 DQV C 1 1101 1101 DQV DQV . 
I 2 DQV D 1 1101 1101 DQV DQV . 
J 4 HOH A 1 1201 2 HOH HOH . 
J 4 HOH A 2 1202 1 HOH HOH . 
J 4 HOH A 3 1203 3 HOH HOH . 
K 4 HOH B 1 1201 6 HOH HOH . 
K 4 HOH B 2 1202 5 HOH HOH . 
K 4 HOH B 3 1203 4 HOH HOH . 
L 4 HOH C 1 1201 9 HOH HOH . 
L 4 HOH C 2 1202 10 HOH HOH . 
L 4 HOH C 3 1203 8 HOH HOH . 
M 4 HOH D 1 1201 7 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA CNA . . . F 3 -7.248 17.978 38.147 1 73 ? PA CNA 1102 A 1 
HETATM 2 O O1A CNA . . . F 3 -6.683 19.259 38.683 1 67.48 ? O1A CNA 1102 A 1 
HETATM 3 O O2A CNA . . . F 3 -6.656 16.673 38.57 1 73.81 ? O2A CNA 1102 A 1 
HETATM 4 O O5B CNA . . . F 3 -8.825 17.951 38.422 1 71.45 ? O5B CNA 1102 A 1 
HETATM 5 C C5B CNA . . . F 3 -9.543 16.702 38.302 1 74.11 ? C5B CNA 1102 A 1 
HETATM 6 C C4B CNA . . . F 3 -11.011 17.025 38.221 1 76.01 ? C4B CNA 1102 A 1 
HETATM 7 O O4B CNA . . . F 3 -11.775 15.802 38.338 1 80.84 ? O4B CNA 1102 A 1 
HETATM 8 C C3B CNA . . . F 3 -11.544 17.957 39.316 1 76.08 ? C3B CNA 1102 A 1 
HETATM 9 O O3B CNA . . . F 3 -12.547 18.807 38.778 1 76.34 ? O3B CNA 1102 A 1 
HETATM 10 C C2B CNA . . . F 3 -12.052 16.974 40.376 1 79.75 ? C2B CNA 1102 A 1 
HETATM 11 O O2B CNA . . . F 3 -13.105 17.413 41.21 1 80.33 ? O2B CNA 1102 A 1 
HETATM 12 C C1B CNA . . . F 3 -12.556 15.825 39.511 1 82.47 ? C1B CNA 1102 A 1 
HETATM 13 N N9A CNA . . . F 3 -12.403 14.553 40.195 1 86.48 ? N9A CNA 1102 A 1 
HETATM 14 C C8A CNA . . . F 3 -11.215 13.953 40.536 1 89.54 ? C8A CNA 1102 A 1 
HETATM 15 N N7A CNA . . . F 3 -11.37 12.823 41.177 1 92.99 ? N7A CNA 1102 A 1 
HETATM 16 C C5A CNA . . . F 3 -12.746 12.68 41.283 1 91.64 ? C5A CNA 1102 A 1 
HETATM 17 C C6A CNA . . . F 3 -13.545 11.682 41.865 1 92.47 ? C6A CNA 1102 A 1 
HETATM 18 N N6A CNA . . . F 3 -13.048 10.612 42.476 1 95.45 ? N6A CNA 1102 A 1 
HETATM 19 N N1A CNA . . . F 3 -14.888 11.843 41.797 1 93.77 ? N1A CNA 1102 A 1 
HETATM 20 C C2A CNA . . . F 3 -15.376 12.929 41.18 1 91.88 ? C2A CNA 1102 A 1 
HETATM 21 N N3A CNA . . . F 3 -14.723 13.93 40.593 1 87.97 ? N3A CNA 1102 A 1 
HETATM 22 C C4A CNA . . . F 3 -13.396 13.744 40.683 1 88.63 ? C4A CNA 1102 A 1 
HETATM 23 O O3 CNA . . . F 3 -7.21 17.993 36.537 1 75.42 ? O3 CNA 1102 A 1 
HETATM 24 P PN CNA . . . F 3 -7.961 18.755 35.34 1 71.87 ? PN CNA 1102 A 1 
HETATM 25 O O1N CNA . . . F 3 -9.303 19.278 35.742 1 70.53 ? O1N CNA 1102 A 1 
HETATM 26 O O2N CNA . . . F 3 -7.008 19.749 34.779 1 72.7 ? O2N CNA 1102 A 1 
HETATM 27 O O5D CNA . . . F 3 -8.119 17.517 34.347 1 74.78 ? O5D CNA 1102 A 1 
HETATM 28 C C5D CNA . . . F 3 -8.727 16.275 34.771 1 78.26 ? C5D CNA 1102 A 1 
HETATM 29 C C4D CNA . . . F 3 -8.946 15.412 33.547 1 84.82 ? C4D CNA 1102 A 1 
HETATM 30 C C4' CNA . . . F 3 -10.077 14.392 33.76 1 89.29 ? C4' CNA 1102 A 1 
HETATM 31 C C3D CNA . . . F 3 -9.405 16.19 32.301 1 86.95 ? C3D CNA 1102 A 1 
HETATM 32 O O3D CNA . . . F 3 -9.187 15.489 31.087 1 87.3 ? O3D CNA 1102 A 1 
HETATM 33 C C2D CNA . . . F 3 -10.889 16.374 32.633 1 88.05 ? C2D CNA 1102 A 1 
HETATM 34 O O2D CNA . . . F 3 -11.581 16.953 31.539 1 89.14 ? O2D CNA 1102 A 1 
HETATM 35 C C1D CNA . . . F 3 -11.292 14.936 32.986 1 91.53 ? C1D CNA 1102 A 1 
HETATM 36 N N1N CNA . . . F 3 -12.572 14.777 33.718 1 94.07 ? N1N CNA 1102 A 1 
HETATM 37 C C2N CNA . . . F 3 -13.159 15.792 34.384 1 91.28 ? C2N CNA 1102 A 1 
HETATM 38 C C3N CNA . . . F 3 -14.358 15.586 35.066 1 93.22 ? C3N CNA 1102 A 1 
HETATM 39 C C7N CNA . . . F 3 -15.049 16.697 35.803 1 91.68 ? C7N CNA 1102 A 1 
HETATM 40 O O7N CNA . . . F 3 -16.067 16.445 36.469 1 92.95 ? O7N CNA 1102 A 1 
HETATM 41 N N7N CNA . . . F 3 -14.553 17.927 35.73 1 88.85 ? N7N CNA 1102 A 1 
HETATM 42 C C4N CNA . . . F 3 -14.944 14.327 35.042 1 96.62 ? C4N CNA 1102 A 1 
HETATM 43 C C5N CNA . . . F 3 -14.329 13.299 34.353 1 98.67 ? C5N CNA 1102 A 1 
HETATM 44 C C6N CNA . . . F 3 -13.138 13.528 33.694 1 97.89 ? C6N CNA 1102 A 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           237 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           44 
#