data_9BQF # _model_server_result.job_id ttH48mmNw54eq5Jr5WJzrQ _model_server_result.datetime_utc '2025-07-16 12:31:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9bqf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 9BQF # _exptl.entry_id 9BQF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 602.762 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[(BENZYLOXY)CARBONYL]-O-(TERT-BUTYL)-L-THREONYL-3-CYCLOHEXYL-N-[(1S)-2-HYDROXY-1-{[(3S)-2-OXOPYRROLIDIN-3-YL]METHYL}ETHYL]-L-ALANINAMIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.095 _cell.angle_gamma 90 _cell.entry_id 9BQF _cell.length_a 54.3 _cell.length_b 81.04 _cell.length_c 86.399 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9BQF _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y (x,y,-x+z)' _symmetry.space_group_name_H-M 'I 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_455 -x-1,y,-z -1 0 0 0 1 0 0 0 -1 -54.3 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 145 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 145 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C35 _struct_conn.ptnr2_label_comp_id NOL _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id NOL _struct_conn.ptnr2_auth_seq_id 401 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.804 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C32 H50 N4 O7' _chem_comp.formula_weight 602.762 _chem_comp.id NOL _chem_comp.mon_nstd_flag . _chem_comp.name N-[(BENZYLOXY)CARBONYL]-O-(TERT-BUTYL)-L-THREONYL-3-CYCLOHEXYL-N-[(1S)-2-HYDROXY-1-{[(3S)-2-OXOPYRROLIDIN-3-YL]METHYL}ETHYL]-L-ALANINAMIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NOL sing 235 n y C1 C6 NOL doub 236 n y C1 H1 NOL sing 237 n n C2 C3 NOL doub 238 n y C2 C13 NOL sing 239 n n C3 C4 NOL sing 240 n y C3 H3 NOL sing 241 n n C4 C5 NOL doub 242 n y C4 H4 NOL sing 243 n n C5 C6 NOL sing 244 n y C5 H5 NOL sing 245 n n C6 H6 NOL sing 246 n n C13 O15 NOL sing 247 n n C13 H131 NOL sing 248 n n C13 H132 NOL sing 249 n n O15 C17 NOL sing 250 n n C17 N19 NOL sing 251 n n C17 O89 NOL doub 252 n n N19 C21 NOL sing 253 n n N19 HN19 NOL sing 254 n n C21 C23 NOL sing 255 n n C21 C75 NOL sing 256 n n C21 H21 NOL sing 257 n n C23 N25 NOL sing 258 n n C23 O73 NOL doub 259 n n N25 C27 NOL sing 260 n n N25 HN25 NOL sing 261 n n C27 C29 NOL sing 262 n n C27 C58 NOL sing 263 n n C27 H27 NOL sing 264 n n C29 N31 NOL sing 265 n n C29 O56 NOL doub 266 n n N31 C33 NOL sing 267 n n N31 HN31 NOL sing 268 n n C33 C35 NOL sing 269 n n C33 C41 NOL sing 270 n n C33 H33 NOL sing 271 n n C35 O39 NOL sing 272 n n C35 H351 NOL sing 273 n n C35 H352 NOL sing 274 n n O39 HO39 NOL sing 275 n n C41 C43 NOL sing 276 n n C41 H411 NOL sing 277 n n C41 H412 NOL sing 278 n n C43 C45 NOL sing 279 n n C43 C51 NOL sing 280 n n C43 H43 NOL sing 281 n n C45 C47 NOL sing 282 n n C45 H451 NOL sing 283 n n C45 H452 NOL sing 284 n n C47 N49 NOL sing 285 n n C47 H471 NOL sing 286 n n C47 H472 NOL sing 287 n n N49 C51 NOL sing 288 n n N49 HN49 NOL sing 289 n n C51 O54 NOL doub 290 n n C58 C60 NOL sing 291 n n C58 H581 NOL sing 292 n n C58 H582 NOL sing 293 n n C60 C62 NOL sing 294 n n C60 C66 NOL sing 295 n n C60 H60 NOL sing 296 n n C62 C63 NOL sing 297 n n C62 H621 NOL sing 298 n n C62 H622 NOL sing 299 n n C63 C64 NOL sing 300 n n C63 H631 NOL sing 301 n n C63 H632 NOL sing 302 n n C64 C65 NOL sing 303 n n C64 H641 NOL sing 304 n n C64 H642 NOL sing 305 n n C65 C66 NOL sing 306 n n C65 H651 NOL sing 307 n n C65 H652 NOL sing 308 n n C66 H661 NOL sing 309 n n C66 H662 NOL sing 310 n n C75 C77 NOL sing 311 n n C75 O79 NOL sing 312 n n C75 H75 NOL sing 313 n n C77 H771 NOL sing 314 n n C77 H772 NOL sing 315 n n C77 H773 NOL sing 316 n n O79 C81 NOL sing 317 n n C81 C83 NOL sing 318 n n C81 C85 NOL sing 319 n n C81 C87 NOL sing 320 n n C83 H831 NOL sing 321 n n C83 H832 NOL sing 322 n n C83 H833 NOL sing 323 n n C85 H851 NOL sing 324 n n C85 H852 NOL sing 325 n n C85 H853 NOL sing 326 n n C87 H871 NOL sing 327 n n C87 H872 NOL sing 328 n n C87 H873 NOL sing 329 n n # _atom_sites.entry_id 9BQF _atom_sites.fract_transf_matrix[1][1] 0.018416 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002292 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01234 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011664 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id NOL _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 401 _pdbx_nonpoly_scheme.auth_seq_num 401 _pdbx_nonpoly_scheme.pdb_mon_id NOL _pdbx_nonpoly_scheme.auth_mon_id i78 _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NOL . . . B 2 -6.018 -22.467 -17.405 1 43.4 ? C1 NOL 401 A 1 HETATM 2 C C2 NOL . . . B 2 -5.722 -21.183 -17.851 1 43.34 ? C2 NOL 401 A 1 HETATM 3 C C3 NOL . . . B 2 -5.494 -20.977 -19.21 1 45.24 ? C3 NOL 401 A 1 HETATM 4 C C4 NOL . . . B 2 -5.568 -22.039 -20.108 1 46.11 ? C4 NOL 401 A 1 HETATM 5 C C5 NOL . . . B 2 -5.871 -23.32 -19.655 1 43.93 ? C5 NOL 401 A 1 HETATM 6 C C6 NOL . . . B 2 -6.091 -23.532 -18.303 1 42.88 ? C6 NOL 401 A 1 HETATM 7 C C13 NOL . . . B 2 -5.639 -20.029 -16.866 1 42.33 ? C13 NOL 401 A 1 HETATM 8 O O15 NOL . . . B 2 -6.93 -19.482 -16.556 1 42 ? O15 NOL 401 A 1 HETATM 9 C C17 NOL . . . B 2 -7.645 -18.659 -17.522 1 40.31 ? C17 NOL 401 A 1 HETATM 10 N N19 NOL . . . B 2 -8.933 -18.418 -17.314 1 33.51 ? N19 NOL 401 A 1 HETATM 11 C C21 NOL . . . B 2 -9.712 -17.561 -18.172 1 31.65 ? C21 NOL 401 A 1 HETATM 12 C C23 NOL . . . B 2 -10.012 -16.258 -17.499 1 30.27 ? C23 NOL 401 A 1 HETATM 13 N N25 NOL . . . B 2 -9.521 -15.132 -18.042 1 30.65 ? N25 NOL 401 A 1 HETATM 14 C C27 NOL . . . B 2 -9.762 -13.843 -17.426 1 27.66 ? C27 NOL 401 A 1 HETATM 15 C C29 NOL . . . B 2 -11.229 -13.509 -17.454 1 26.33 ? C29 NOL 401 A 1 HETATM 16 N N31 NOL . . . B 2 -11.787 -12.976 -16.367 1 24.17 ? N31 NOL 401 A 1 HETATM 17 C C33 NOL . . . B 2 -13.162 -12.487 -16.396 1 22.7 ? C33 NOL 401 A 1 HETATM 18 C C35 NOL . . . B 2 -13.167 -10.985 -16.05 1 22.09 ? C35 NOL 401 A 1 HETATM 19 O O39 NOL . . . B 2 -14.434 -10.311 -16.145 1 23.76 ? O39 NOL 401 A 1 HETATM 20 C C41 NOL . . . B 2 -14 -13.331 -15.432 1 21.11 ? C41 NOL 401 A 1 HETATM 21 C C43 NOL . . . B 2 -14.02 -14.805 -15.835 1 21.93 ? C43 NOL 401 A 1 HETATM 22 C C45 NOL . . . B 2 -14.66 -15.03 -17.193 1 22.28 ? C45 NOL 401 A 1 HETATM 23 C C47 NOL . . . B 2 -15.652 -16.181 -17.009 1 25.12 ? C47 NOL 401 A 1 HETATM 24 N N49 NOL . . . B 2 -15.692 -16.434 -15.57 1 22.73 ? N49 NOL 401 A 1 HETATM 25 C C51 NOL . . . B 2 -14.893 -15.608 -14.903 1 21.7 ? C51 NOL 401 A 1 HETATM 26 O O54 NOL . . . B 2 -14.852 -15.479 -13.699 1 21.95 ? O54 NOL 401 A 1 HETATM 27 O O56 NOL . . . B 2 -11.882 -13.746 -18.454 1 24.98 ? O56 NOL 401 A 1 HETATM 28 C C58 NOL . . . B 2 -8.976 -12.755 -18.166 1 28.97 ? C58 NOL 401 A 1 HETATM 29 C C60 NOL . . . B 2 -7.465 -12.985 -18.123 1 31.87 ? C60 NOL 401 A 1 HETATM 30 C C62 NOL . . . B 2 -6.947 -13.176 -16.708 1 28.51 ? C62 NOL 401 A 1 HETATM 31 C C63 NOL . . . B 2 -5.462 -13.503 -16.742 1 33.08 ? C63 NOL 401 A 1 HETATM 32 C C64 NOL . . . B 2 -4.668 -12.39 -17.42 1 33.59 ? C64 NOL 401 A 1 HETATM 33 C C65 NOL . . . B 2 -5.261 -11.985 -18.759 1 42.71 ? C65 NOL 401 A 1 HETATM 34 C C66 NOL . . . B 2 -6.765 -11.744 -18.649 1 39.21 ? C66 NOL 401 A 1 HETATM 35 O O73 NOL . . . B 2 -10.678 -16.256 -16.483 1 27.01 ? O73 NOL 401 A 1 HETATM 36 C C75 NOL . . . B 2 -11.021 -18.277 -18.455 1 32.28 ? C75 NOL 401 A 1 HETATM 37 C C77 NOL . . . B 2 -12.033 -17.306 -19.063 1 33.27 ? C77 NOL 401 A 1 HETATM 38 O O79 NOL . . . B 2 -10.782 -19.369 -19.344 1 37.36 ? O79 NOL 401 A 1 HETATM 39 C C81 NOL . . . B 2 -11.416 -20.626 -19.035 1 37.02 ? C81 NOL 401 A 1 HETATM 40 C C83 NOL . . . B 2 -10.63 -21.344 -17.943 1 35.93 ? C83 NOL 401 A 1 HETATM 41 C C85 NOL . . . B 2 -11.358 -21.429 -20.32 1 41.53 ? C85 NOL 401 A 1 HETATM 42 C C87 NOL . . . B 2 -12.881 -20.522 -18.616 1 36.45 ? C87 NOL 401 A 1 HETATM 43 O O89 NOL . . . B 2 -7.041 -18.209 -18.485 1 43.5 ? O89 NOL 401 A 1 # _model_server_stats.io_time_ms 96 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #