data_9BTM # _model_server_result.job_id 2zP-rvOF3ZcH3KZtjbh88Q _model_server_result.datetime_utc '2025-09-01 15:58:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9btm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 9BTM # _exptl.entry_id 9BTM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.18 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9BTM _cell.length_a 78.884 _cell.length_b 89.339 _cell.length_c 119.768 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9BTM _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B OG SER 17 A SER 17 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? metalc ? metalc2 B OG1 THR 35 A THR 35 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? metalc ? metalc3 C O2G GTP . A GTP 201 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? metalc ? metalc4 C O1B GTP . A GTP 201 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.962 ? metalc ? metalc5 D MG MG . A MG 202 1_555 F O HOH . A HOH 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? metalc ? metalc6 D MG MG . A MG 202 1_555 F O HOH . A HOH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.978 ? # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 129 n n PG O2G GTP sing 130 n n PG O3G GTP sing 131 n n PG O3B GTP sing 132 n n O2G HOG2 GTP sing 133 n n O3G HOG3 GTP sing 134 n n O3B PB GTP sing 135 n n PB O1B GTP doub 136 n n PB O2B GTP sing 137 n n PB O3A GTP sing 138 n n O2B HOB2 GTP sing 139 n n O3A PA GTP sing 140 n n PA O1A GTP doub 141 n n PA O2A GTP sing 142 n n PA O5' GTP sing 143 n n O2A HOA2 GTP sing 144 n n O5' C5' GTP sing 145 n n C5' C4' GTP sing 146 n n C5' H5' GTP sing 147 n n C5' "H5''" GTP sing 148 n n C4' O4' GTP sing 149 n n C4' C3' GTP sing 150 n n C4' H4' GTP sing 151 n n O4' C1' GTP sing 152 n n C3' O3' GTP sing 153 n n C3' C2' GTP sing 154 n n C3' H3' GTP sing 155 n n O3' HO3' GTP sing 156 n n C2' O2' GTP sing 157 n n C2' C1' GTP sing 158 n n C2' H2' GTP sing 159 n n O2' HO2' GTP sing 160 n n C1' N9 GTP sing 161 n n C1' H1' GTP sing 162 n n N9 C8 GTP sing 163 n y N9 C4 GTP sing 164 n y C8 N7 GTP doub 165 n y C8 H8 GTP sing 166 n n N7 C5 GTP sing 167 n y C5 C6 GTP sing 168 n n C5 C4 GTP doub 169 n y C6 O6 GTP doub 170 n n C6 N1 GTP sing 171 n n N1 C2 GTP sing 172 n n N1 HN1 GTP sing 173 n n C2 N2 GTP sing 174 n n C2 N3 GTP doub 175 n n N2 HN21 GTP sing 176 n n N2 HN22 GTP sing 177 n n N3 C4 GTP sing 178 n n # _atom_sites.entry_id 9BTM _atom_sites.fract_transf_matrix[1][1] 0.012677 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011193 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008349 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GTP A 1 201 201 GTP GTP . D 4 MG A 1 202 202 MG MG . E 5 HOH B 1 601 17 HOH HOH . E 5 HOH B 2 602 46 HOH HOH . E 5 HOH B 3 603 47 HOH HOH . F 5 HOH A 1 301 6 HOH HOH . F 5 HOH A 2 302 45 HOH HOH . F 5 HOH A 3 303 24 HOH HOH . F 5 HOH A 4 304 1 HOH HOH . F 5 HOH A 5 305 2 HOH HOH . F 5 HOH A 6 306 40 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . C 3 24.833 -9.341 -12.856 1 65.91 ? PG GTP 201 A 1 HETATM 2 O O1G GTP . . . C 3 25.814 -8.327 -12.316 1 72.63 ? O1G GTP 201 A 1 HETATM 3 O O2G GTP . . . C 3 24.121 -9.984 -11.689 1 63.46 ? O2G GTP 201 A 1 HETATM 4 O O3G GTP . . . C 3 25.579 -10.375 -13.666 1 56.25 ? O3G GTP 201 A 1 HETATM 5 O O3B GTP . . . C 3 23.771 -8.576 -13.797 1 69.98 ? O3B GTP 201 A 1 HETATM 6 P PB GTP . . . C 3 22.636 -9.398 -14.595 1 63.44 ? PB GTP 201 A 1 HETATM 7 O O1B GTP . . . C 3 22.054 -10.451 -13.682 1 57.77 ? O1B GTP 201 A 1 HETATM 8 O O2B GTP . . . C 3 23.185 -10.027 -15.853 1 64.21 ? O2B GTP 201 A 1 HETATM 9 O O3A GTP . . . C 3 21.515 -8.293 -14.953 1 64.07 ? O3A GTP 201 A 1 HETATM 10 P PA GTP . . . C 3 20.01 -8.407 -14.397 1 66.39 ? PA GTP 201 A 1 HETATM 11 O O1A GTP . . . C 3 20.036 -8.535 -12.892 1 69.51 ? O1A GTP 201 A 1 HETATM 12 O O2A GTP . . . C 3 19.268 -9.562 -15.025 1 61.95 ? O2A GTP 201 A 1 HETATM 13 O O5' GTP . . . C 3 19.321 -7.007 -14.773 1 62.79 ? O5' GTP 201 A 1 HETATM 14 C C5' GTP . . . C 3 20.069 -5.873 -15.141 1 68.67 ? C5' GTP 201 A 1 HETATM 15 C C4' GTP . . . C 3 19.1 -4.704 -15.183 1 64.62 ? C4' GTP 201 A 1 HETATM 16 O O4' GTP . . . C 3 18.614 -4.617 -16.502 1 70.34 ? O4' GTP 201 A 1 HETATM 17 C C3' GTP . . . C 3 17.907 -4.96 -14.28 1 73.03 ? C3' GTP 201 A 1 HETATM 18 O O3' GTP . . . C 3 17.685 -3.823 -13.483 1 73.37 ? O3' GTP 201 A 1 HETATM 19 C C2' GTP . . . C 3 16.724 -5.17 -15.201 1 66.63 ? C2' GTP 201 A 1 HETATM 20 O O2' GTP . . . C 3 15.595 -4.45 -14.761 1 79.08 ? O2' GTP 201 A 1 HETATM 21 C C1' GTP . . . C 3 17.205 -4.663 -16.547 1 69.16 ? C1' GTP 201 A 1 HETATM 22 N N9 GTP . . . C 3 16.828 -5.604 -17.607 1 75.17 ? N9 GTP 201 A 1 HETATM 23 C C8 GTP . . . C 3 17.134 -6.937 -17.673 1 72.85 ? C8 GTP 201 A 1 HETATM 24 N N7 GTP . . . C 3 16.61 -7.437 -18.815 1 70.88 ? N7 GTP 201 A 1 HETATM 25 C C5 GTP . . . C 3 15.983 -6.438 -19.477 1 75.77 ? C5 GTP 201 A 1 HETATM 26 C C6 GTP . . . C 3 15.29 -6.393 -20.68 1 80.33 ? C6 GTP 201 A 1 HETATM 27 O O6 GTP . . . C 3 15.158 -7.41 -21.362 1 77.43 ? O6 GTP 201 A 1 HETATM 28 N N1 GTP . . . C 3 14.748 -5.196 -21.107 1 84.65 ? N1 GTP 201 A 1 HETATM 29 C C2 GTP . . . C 3 14.897 -4.057 -20.341 1 74.15 ? C2 GTP 201 A 1 HETATM 30 N N2 GTP . . . C 3 14.376 -2.905 -20.747 1 82.59 ? N2 GTP 201 A 1 HETATM 31 N N3 GTP . . . C 3 15.585 -4.111 -19.15 1 68.09 ? N3 GTP 201 A 1 HETATM 32 C C4 GTP . . . C 3 16.117 -5.28 -18.728 1 72.09 ? C4 GTP 201 A 1 # _model_server_stats.io_time_ms 31 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 207 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 32 #