data_9BTY # _model_server_result.job_id '_A1j8PKq2uou9xyu6k43Ww' _model_server_result.datetime_utc '2025-01-06 06:37:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9bty # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":303}' # _entry.id 9BTY # _exptl.entry_id 9BTY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.12 _cell.angle_gamma 90 _cell.entry_id 9BTY _cell.length_a 216.843 _cell.length_b 70.281 _cell.length_c 143.207 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9BTY _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 K N N ? 7 M N N ? 7 N N N ? 7 O N N ? 7 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 99 A CYS 98 1_555 A SG CYS 162 A CYS 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? disulf ? disulf2 A SG CYS 201 A CYS 200 1_555 A SG CYS 257 A CYS 256 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf3 B SG CYS 26 B CYS 25 1_555 B SG CYS 81 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf4 C SG CYS 99 C CYS 98 1_555 C SG CYS 162 C CYS 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? disulf ? disulf5 C SG CYS 201 C CYS 200 1_555 C SG CYS 257 C CYS 256 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf6 D SG CYS 23 D CYS 22 1_555 D SG CYS 89 D CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf7 D SG CYS 133 D CYS 132 1_555 D SG CYS 183 D CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf8 D SG CYS 158 D CYS 157 1_555 E SG CYS 173 E CYS 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf9 E SG CYS 24 E CYS 23 1_555 E SG CYS 92 E CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf10 E SG CYS 147 E CYS 146 1_555 E SG CYS 212 E CYS 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf11 F SG CYS 26 F CYS 25 1_555 F SG CYS 81 F CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf12 G SG CYS 23 G CYS 22 1_555 G SG CYS 89 G CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf13 G SG CYS 133 G CYS 132 1_555 G SG CYS 183 G CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf14 G SG CYS 158 G CYS 157 1_555 H SG CYS 173 H CYS 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf15 H SG CYS 24 H CYS 23 1_555 H SG CYS 92 H CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf16 H SG CYS 147 H CYS 146 1_555 H SG CYS 212 H CYS 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? covale ? covale1 A NZ LYS 44 A LYS 43 1_555 I C XIK . A XIK 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale2 C NZ LYS 44 C LYS 43 1_555 L C XIK . C XIK 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 135 n n C1 C2 GOL sing 136 n n C1 H11 GOL sing 137 n n C1 H12 GOL sing 138 n n O1 HO1 GOL sing 139 n n C2 O2 GOL sing 140 n n C2 C3 GOL sing 141 n n C2 H2 GOL sing 142 n n O2 HO2 GOL sing 143 n n C3 O3 GOL sing 144 n n C3 H31 GOL sing 145 n n C3 H32 GOL sing 146 n n O3 HO3 GOL sing 147 n n # _atom_sites.entry_id 9BTY _atom_sites.fract_transf_matrix[1][1] 0.004612 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00116 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014229 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0072 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 5 XIK A 1 301 301 XIK XIK . J 6 ACT A 1 302 302 ACT ACT . K 7 GOL A 1 303 303 GOL GOL . L 5 XIK C 1 301 301 XIK XIK . M 7 GOL C 1 302 302 GOL GOL . N 7 GOL C 1 303 303 GOL GOL . O 7 GOL E 1 301 301 GOL GOL . P 7 GOL F 1 101 101 GOL GOL . Q 8 HOH A 1 401 401 HOH HOH . Q 8 HOH A 2 402 402 HOH HOH . Q 8 HOH A 3 403 403 HOH HOH . Q 8 HOH A 4 404 404 HOH HOH . Q 8 HOH A 5 405 405 HOH HOH . Q 8 HOH A 6 406 406 HOH HOH . Q 8 HOH A 7 407 407 HOH HOH . Q 8 HOH A 8 408 408 HOH HOH . Q 8 HOH A 9 409 409 HOH HOH . Q 8 HOH A 10 410 410 HOH HOH . Q 8 HOH A 11 411 411 HOH HOH . Q 8 HOH A 12 412 412 HOH HOH . Q 8 HOH A 13 413 413 HOH HOH . Q 8 HOH A 14 414 414 HOH HOH . Q 8 HOH A 15 415 415 HOH HOH . Q 8 HOH A 16 416 416 HOH HOH . Q 8 HOH A 17 417 417 HOH HOH . Q 8 HOH A 18 418 418 HOH HOH . Q 8 HOH A 19 419 419 HOH HOH . Q 8 HOH A 20 420 420 HOH HOH . Q 8 HOH A 21 421 421 HOH HOH . Q 8 HOH A 22 422 422 HOH HOH . Q 8 HOH A 23 423 423 HOH HOH . Q 8 HOH A 24 424 424 HOH HOH . Q 8 HOH A 25 425 425 HOH HOH . Q 8 HOH A 26 426 426 HOH HOH . Q 8 HOH A 27 427 427 HOH HOH . Q 8 HOH A 28 428 428 HOH HOH . Q 8 HOH A 29 429 429 HOH HOH . Q 8 HOH A 30 430 430 HOH HOH . Q 8 HOH A 31 431 431 HOH HOH . Q 8 HOH A 32 432 432 HOH HOH . Q 8 HOH A 33 433 433 HOH HOH . Q 8 HOH A 34 434 434 HOH HOH . Q 8 HOH A 35 435 435 HOH HOH . Q 8 HOH A 36 436 436 HOH HOH . Q 8 HOH A 37 437 437 HOH HOH . Q 8 HOH A 38 438 438 HOH HOH . Q 8 HOH A 39 439 439 HOH HOH . Q 8 HOH A 40 440 440 HOH HOH . Q 8 HOH A 41 441 441 HOH HOH . Q 8 HOH A 42 442 442 HOH HOH . Q 8 HOH A 43 443 443 HOH HOH . Q 8 HOH A 44 444 444 HOH HOH . Q 8 HOH A 45 445 445 HOH HOH . Q 8 HOH A 46 446 446 HOH HOH . Q 8 HOH A 47 447 447 HOH HOH . Q 8 HOH A 48 448 448 HOH HOH . Q 8 HOH A 49 449 449 HOH HOH . R 8 HOH B 1 101 101 HOH HOH . R 8 HOH B 2 102 102 HOH HOH . R 8 HOH B 3 103 103 HOH HOH . R 8 HOH B 4 104 104 HOH HOH . R 8 HOH B 5 105 105 HOH HOH . R 8 HOH B 6 106 106 HOH HOH . R 8 HOH B 7 107 107 HOH HOH . S 8 HOH C 1 401 401 HOH HOH . S 8 HOH C 2 402 402 HOH HOH . S 8 HOH C 3 403 403 HOH HOH . S 8 HOH C 4 404 404 HOH HOH . S 8 HOH C 5 405 405 HOH HOH . S 8 HOH C 6 406 406 HOH HOH . S 8 HOH C 7 407 407 HOH HOH . S 8 HOH C 8 408 408 HOH HOH . S 8 HOH C 9 409 409 HOH HOH . S 8 HOH C 10 410 410 HOH HOH . S 8 HOH C 11 411 411 HOH HOH . S 8 HOH C 12 412 412 HOH HOH . S 8 HOH C 13 413 413 HOH HOH . S 8 HOH C 14 414 414 HOH HOH . S 8 HOH C 15 415 415 HOH HOH . S 8 HOH C 16 416 416 HOH HOH . S 8 HOH C 17 417 417 HOH HOH . S 8 HOH C 18 418 418 HOH HOH . S 8 HOH C 19 419 419 HOH HOH . S 8 HOH C 20 420 420 HOH HOH . S 8 HOH C 21 421 421 HOH HOH . S 8 HOH C 22 422 422 HOH HOH . S 8 HOH C 23 423 423 HOH HOH . S 8 HOH C 24 424 424 HOH HOH . S 8 HOH C 25 425 425 HOH HOH . S 8 HOH C 26 426 426 HOH HOH . S 8 HOH C 27 427 427 HOH HOH . S 8 HOH C 28 428 428 HOH HOH . S 8 HOH C 29 429 429 HOH HOH . S 8 HOH C 30 430 430 HOH HOH . S 8 HOH C 31 431 431 HOH HOH . S 8 HOH C 32 432 432 HOH HOH . S 8 HOH C 33 433 433 HOH HOH . S 8 HOH C 34 434 434 HOH HOH . S 8 HOH C 35 435 435 HOH HOH . S 8 HOH C 36 436 436 HOH HOH . S 8 HOH C 37 437 437 HOH HOH . S 8 HOH C 38 438 438 HOH HOH . S 8 HOH C 39 439 439 HOH HOH . S 8 HOH C 40 440 440 HOH HOH . S 8 HOH C 41 441 441 HOH HOH . T 8 HOH D 1 301 301 HOH HOH . T 8 HOH D 2 302 302 HOH HOH . T 8 HOH D 3 303 303 HOH HOH . T 8 HOH D 4 304 304 HOH HOH . T 8 HOH D 5 305 305 HOH HOH . T 8 HOH D 6 306 306 HOH HOH . T 8 HOH D 7 307 307 HOH HOH . T 8 HOH D 8 308 308 HOH HOH . T 8 HOH D 9 309 309 HOH HOH . T 8 HOH D 10 310 310 HOH HOH . T 8 HOH D 11 311 311 HOH HOH . U 8 HOH E 1 401 401 HOH HOH . U 8 HOH E 2 402 402 HOH HOH . U 8 HOH E 3 403 403 HOH HOH . U 8 HOH E 4 404 404 HOH HOH . U 8 HOH E 5 405 405 HOH HOH . U 8 HOH E 6 406 406 HOH HOH . U 8 HOH E 7 407 407 HOH HOH . U 8 HOH E 8 408 408 HOH HOH . U 8 HOH E 9 409 409 HOH HOH . U 8 HOH E 10 410 410 HOH HOH . U 8 HOH E 11 411 411 HOH HOH . U 8 HOH E 12 412 412 HOH HOH . U 8 HOH E 13 413 413 HOH HOH . U 8 HOH E 14 414 414 HOH HOH . U 8 HOH E 15 415 415 HOH HOH . U 8 HOH E 16 416 416 HOH HOH . U 8 HOH E 17 417 417 HOH HOH . V 8 HOH F 1 201 201 HOH HOH . V 8 HOH F 2 202 202 HOH HOH . V 8 HOH F 3 203 203 HOH HOH . V 8 HOH F 4 204 204 HOH HOH . V 8 HOH F 5 205 205 HOH HOH . V 8 HOH F 6 206 206 HOH HOH . V 8 HOH F 7 207 207 HOH HOH . V 8 HOH F 8 208 208 HOH HOH . V 8 HOH F 9 209 209 HOH HOH . V 8 HOH F 10 210 210 HOH HOH . V 8 HOH F 11 211 211 HOH HOH . V 8 HOH F 12 212 212 HOH HOH . W 8 HOH G 1 301 301 HOH HOH . W 8 HOH G 2 302 302 HOH HOH . W 8 HOH G 3 303 303 HOH HOH . W 8 HOH G 4 304 304 HOH HOH . W 8 HOH G 5 305 305 HOH HOH . W 8 HOH G 6 306 306 HOH HOH . W 8 HOH G 7 307 307 HOH HOH . W 8 HOH G 8 308 308 HOH HOH . W 8 HOH G 9 309 309 HOH HOH . W 8 HOH G 10 310 310 HOH HOH . W 8 HOH G 11 311 311 HOH HOH . W 8 HOH G 12 312 312 HOH HOH . W 8 HOH G 13 313 313 HOH HOH . W 8 HOH G 14 314 314 HOH HOH . W 8 HOH G 15 315 315 HOH HOH . W 8 HOH G 16 316 316 HOH HOH . W 8 HOH G 17 317 317 HOH HOH . W 8 HOH G 18 318 318 HOH HOH . W 8 HOH G 19 319 319 HOH HOH . W 8 HOH G 20 320 320 HOH HOH . W 8 HOH G 21 321 321 HOH HOH . W 8 HOH G 22 322 322 HOH HOH . W 8 HOH G 23 323 323 HOH HOH . W 8 HOH G 24 324 324 HOH HOH . W 8 HOH G 25 325 325 HOH HOH . W 8 HOH G 26 326 326 HOH HOH . W 8 HOH G 27 327 327 HOH HOH . W 8 HOH G 28 328 328 HOH HOH . W 8 HOH G 29 329 329 HOH HOH . W 8 HOH G 30 330 330 HOH HOH . W 8 HOH G 31 331 331 HOH HOH . X 8 HOH H 1 301 301 HOH HOH . X 8 HOH H 2 302 302 HOH HOH . X 8 HOH H 3 303 303 HOH HOH . X 8 HOH H 4 304 304 HOH HOH . X 8 HOH H 5 305 305 HOH HOH . X 8 HOH H 6 306 306 HOH HOH . X 8 HOH H 7 307 307 HOH HOH . X 8 HOH H 8 308 308 HOH HOH . X 8 HOH H 9 309 309 HOH HOH . X 8 HOH H 10 310 310 HOH HOH . X 8 HOH H 11 311 311 HOH HOH . X 8 HOH H 12 312 312 HOH HOH . X 8 HOH H 13 313 313 HOH HOH . X 8 HOH H 14 314 314 HOH HOH . X 8 HOH H 15 315 315 HOH HOH . X 8 HOH H 16 316 316 HOH HOH . X 8 HOH H 17 317 317 HOH HOH . X 8 HOH H 18 318 318 HOH HOH . X 8 HOH H 19 319 319 HOH HOH . X 8 HOH H 20 320 320 HOH HOH . X 8 HOH H 21 321 321 HOH HOH . X 8 HOH H 22 322 322 HOH HOH . X 8 HOH H 23 323 323 HOH HOH . X 8 HOH H 24 324 324 HOH HOH . X 8 HOH H 25 325 325 HOH HOH . X 8 HOH H 26 326 326 HOH HOH . X 8 HOH H 27 327 327 HOH HOH . X 8 HOH H 28 328 328 HOH HOH . X 8 HOH H 29 329 329 HOH HOH . X 8 HOH H 30 330 330 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . K 7 40.316 73.038 229.242 0.8 57.37 ? C1 GOL 303 A 1 HETATM 2 O O1 GOL . . . K 7 39.621 74.139 229.82 0.8 59.84 ? O1 GOL 303 A 1 HETATM 3 C C2 GOL . . . K 7 41.679 73.532 228.615 0.8 56 ? C2 GOL 303 A 1 HETATM 4 O O2 GOL . . . K 7 42.532 74.134 229.546 0.8 54.62 ? O2 GOL 303 A 1 HETATM 5 C C3 GOL . . . K 7 42.317 72.255 228.007 0.8 53.49 ? C3 GOL 303 A 1 HETATM 6 O O3 GOL . . . K 7 43.673 72.158 228.411 0.8 55.7 ? O3 GOL 303 A 1 # _model_server_stats.io_time_ms 41 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 6 #