data_9BV5
#
_model_server_result.job_id            X9dJQJ3PiaWPdkH9jvWnBA 
_model_server_result.datetime_utc      '2025-06-19 16:20:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9bv5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":601}' 
#
_entry.id    9BV5 
#
_exptl.entry_id    9BV5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9BV5 
_cell.length_a            76.364 
_cell.length_b            98.393 
_cell.length_c            132.262 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9BV5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 421 A CYS 442 1_555 B FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? 
metalc ? metalc2 B FE HEM . A HEM 601 1_555 C N07 A1ASV . A A1ASV 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 177 n n 
CHA C4D HEM doub 178 n n 
CHA HHA HEM sing 179 n n 
CHB C4A HEM sing 180 n n 
CHB C1B HEM doub 181 n n 
CHB HHB HEM sing 182 n n 
CHC C4B HEM sing 183 n n 
CHC C1C HEM doub 184 n n 
CHC HHC HEM sing 185 n n 
CHD C4C HEM doub 186 n n 
CHD C1D HEM sing 187 n n 
CHD HHD HEM sing 188 n n 
C1A C2A HEM doub 189 n y 
C1A NA HEM sing 190 n y 
C2A C3A HEM sing 191 n y 
C2A CAA HEM sing 192 n n 
C3A C4A HEM doub 193 n y 
C3A CMA HEM sing 194 n n 
C4A NA HEM sing 195 n y 
CMA HMA HEM sing 196 n n 
CMA HMAA HEM sing 197 n n 
CMA HMAB HEM sing 198 n n 
CAA CBA HEM sing 199 n n 
CAA HAA HEM sing 200 n n 
CAA HAAA HEM sing 201 n n 
CBA CGA HEM sing 202 n n 
CBA HBA HEM sing 203 n n 
CBA HBAA HEM sing 204 n n 
CGA O1A HEM doub 205 n n 
CGA O2A HEM sing 206 n n 
C1B C2B HEM sing 207 n n 
C1B NB HEM sing 208 n n 
C2B C3B HEM doub 209 n n 
C2B CMB HEM sing 210 n n 
C3B C4B HEM sing 211 n n 
C3B CAB HEM sing 212 n n 
C4B NB HEM doub 213 n n 
CMB HMB HEM sing 214 n n 
CMB HMBA HEM sing 215 n n 
CMB HMBB HEM sing 216 n n 
CAB CBB HEM doub 217 n n 
CAB HAB HEM sing 218 n n 
CBB HBB HEM sing 219 n n 
CBB HBBA HEM sing 220 n n 
C1C C2C HEM sing 221 n y 
C1C NC HEM sing 222 n y 
C2C C3C HEM doub 223 n y 
C2C CMC HEM sing 224 n n 
C3C C4C HEM sing 225 n y 
C3C CAC HEM sing 226 n n 
C4C NC HEM sing 227 n y 
CMC HMC HEM sing 228 n n 
CMC HMCA HEM sing 229 n n 
CMC HMCB HEM sing 230 n n 
CAC CBC HEM doub 231 n n 
CAC HAC HEM sing 232 n n 
CBC HBC HEM sing 233 n n 
CBC HBCA HEM sing 234 n n 
C1D C2D HEM sing 235 n n 
C1D ND HEM doub 236 n n 
C2D C3D HEM doub 237 n n 
C2D CMD HEM sing 238 n n 
C3D C4D HEM sing 239 n n 
C3D CAD HEM sing 240 n n 
C4D ND HEM sing 241 n n 
CMD HMD HEM sing 242 n n 
CMD HMDA HEM sing 243 n n 
CMD HMDB HEM sing 244 n n 
CAD CBD HEM sing 245 n n 
CAD HAD HEM sing 246 n n 
CAD HADA HEM sing 247 n n 
CBD CGD HEM sing 248 n n 
CBD HBD HEM sing 249 n n 
CBD HBDA HEM sing 250 n n 
CGD O1D HEM doub 251 n n 
CGD O2D HEM sing 252 n n 
O2A H2A HEM sing 253 n n 
O2D H2D HEM sing 254 n n 
FE NA HEM sing 255 n n 
FE NB HEM sing 256 n n 
FE NC HEM sing 257 n n 
FE ND HEM sing 258 n n 
#
_atom_sites.entry_id                     9BV5 
_atom_sites.fract_transf_matrix[1][1]    0.013095 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010163 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007561 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEM A 1 601 501 HEM HEM . 
C 3 A1ASV A 1 602 502 A1ASV LIG . 
D 4 EDO A 1 603 504 EDO EDO . 
E 4 EDO A 1 604 505 EDO EDO . 
F 5 HOH A 1 701 9 HOH HOH . 
F 5 HOH A 2 702 12 HOH HOH . 
F 5 HOH A 3 703 7 HOH HOH . 
F 5 HOH A 4 704 5 HOH HOH . 
F 5 HOH A 5 705 2 HOH HOH . 
F 5 HOH A 6 706 11 HOH HOH . 
F 5 HOH A 7 707 1 HOH HOH . 
F 5 HOH A 8 708 13 HOH HOH . 
F 5 HOH A 9 709 4 HOH HOH . 
F 5 HOH A 10 710 6 HOH HOH . 
F 5 HOH A 11 711 3 HOH HOH . 
F 5 HOH A 12 712 10 HOH HOH . 
F 5 HOH A 13 713 8 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . B 2 -14.803 -19.727 -10.384 1 61.21 ? CHA HEM 601 A 1 
HETATM 2 C CHB HEM . . . B 2 -15.626 -22.383 -14.437 1 56.99 ? CHB HEM 601 A 1 
HETATM 3 C CHC HEM . . . B 2 -16.373 -26.222 -11.559 1 59.84 ? CHC HEM 601 A 1 
HETATM 4 C CHD HEM . . . B 2 -15.089 -23.729 -7.627 1 62.58 ? CHD HEM 601 A 1 
HETATM 5 C C1A HEM . . . B 2 -14.99 -20.103 -11.711 1 60.57 ? C1A HEM 601 A 1 
HETATM 6 C C2A HEM . . . B 2 -14.94 -19.213 -12.856 1 61.02 ? C2A HEM 601 A 1 
HETATM 7 C C3A HEM . . . B 2 -15.164 -19.947 -13.958 1 60.16 ? C3A HEM 601 A 1 
HETATM 8 C C4A HEM . . . B 2 -15.366 -21.324 -13.566 1 58 ? C4A HEM 601 A 1 
HETATM 9 C CMA HEM . . . B 2 -15.208 -19.446 -15.41 1 55.37 ? CMA HEM 601 A 1 
HETATM 10 C CAA HEM . . . B 2 -14.67 -17.686 -12.828 1 58.33 ? CAA HEM 601 A 1 
HETATM 11 C CBA HEM . . . B 2 -13.181 -17.393 -12.707 1 61.71 ? CBA HEM 601 A 1 
HETATM 12 C CGA HEM . . . B 2 -12.907 -15.97 -13.076 1 59.53 ? CGA HEM 601 A 1 
HETATM 13 O O1A HEM . . . B 2 -13.632 -15.089 -12.514 1 59.55 ? O1A HEM 601 A 1 
HETATM 14 O O2A HEM . . . B 2 -11.767 -15.662 -13.526 1 60.08 ? O2A HEM 601 A 1 
HETATM 15 C C1B HEM . . . B 2 -15.936 -23.66 -14.008 1 58.45 ? C1B HEM 601 A 1 
HETATM 16 C C2B HEM . . . B 2 -16.348 -24.787 -14.843 1 59.16 ? C2B HEM 601 A 1 
HETATM 17 C C3B HEM . . . B 2 -16.552 -25.843 -14.043 1 59.5 ? C3B HEM 601 A 1 
HETATM 18 C C4B HEM . . . B 2 -16.276 -25.418 -12.674 1 58.57 ? C4B HEM 601 A 1 
HETATM 19 C CMB HEM . . . B 2 -16.505 -24.724 -16.387 1 56.79 ? CMB HEM 601 A 1 
HETATM 20 C CAB HEM . . . B 2 -16.995 -27.275 -14.402 1 59.7 ? CAB HEM 601 A 1 
HETATM 21 C CBB HEM . . . B 2 -16.471 -28.038 -15.367 1 59.57 ? CBB HEM 601 A 1 
HETATM 22 C C1C HEM . . . B 2 -16.084 -25.896 -10.261 1 61.44 ? C1C HEM 601 A 1 
HETATM 23 C C2C HEM . . . B 2 -16.156 -26.799 -9.137 1 61.08 ? C2C HEM 601 A 1 
HETATM 24 C C3C HEM . . . B 2 -15.801 -26.122 -8.034 1 62.74 ? C3C HEM 601 A 1 
HETATM 25 C C4C HEM . . . B 2 -15.496 -24.773 -8.434 1 61.67 ? C4C HEM 601 A 1 
HETATM 26 C CMC HEM . . . B 2 -16.569 -28.272 -9.243 1 62.63 ? CMC HEM 601 A 1 
HETATM 27 C CAC HEM . . . B 2 -15.719 -26.627 -6.582 1 62.61 ? CAC HEM 601 A 1 
HETATM 28 C CBC HEM . . . B 2 -14.637 -26.5 -5.816 1 63.8 ? CBC HEM 601 A 1 
HETATM 29 C C1D HEM . . . B 2 -14.932 -22.428 -8.044 1 61.89 ? C1D HEM 601 A 1 
HETATM 30 C C2D HEM . . . B 2 -14.638 -21.308 -7.191 1 62.73 ? C2D HEM 601 A 1 
HETATM 31 C C3D HEM . . . B 2 -14.554 -20.198 -7.926 1 64.21 ? C3D HEM 601 A 1 
HETATM 32 C C4D HEM . . . B 2 -14.798 -20.573 -9.31 1 62.62 ? C4D HEM 601 A 1 
HETATM 33 C CMD HEM . . . B 2 -14.463 -21.453 -5.665 1 60.86 ? CMD HEM 601 A 1 
HETATM 34 C CAD HEM . . . B 2 -14.261 -18.776 -7.423 1 58.5 ? CAD HEM 601 A 1 
HETATM 35 C CBD HEM . . . B 2 -12.835 -18.702 -6.897 1 63.03 ? CBD HEM 601 A 1 
HETATM 36 C CGD HEM . . . B 2 -12.403 -17.267 -6.69 1 65.16 ? CGD HEM 601 A 1 
HETATM 37 O O1D HEM . . . B 2 -13.29 -16.476 -6.269 1 65.5 ? O1D HEM 601 A 1 
HETATM 38 O O2D HEM . . . B 2 -11.166 -17.003 -6.6 1 64.3 ? O2D HEM 601 A 1 
HETATM 39 N NA HEM . . . B 2 -15.256 -21.378 -12.183 1 58.33 ? NA HEM 601 A 1 
HETATM 40 N NB HEM . . . B 2 -15.907 -24.091 -12.698 1 59.32 ? NB HEM 601 A 1 
HETATM 41 N NC HEM . . . B 2 -15.678 -24.67 -9.789 1 61.25 ? NC HEM 601 A 1 
HETATM 42 N ND HEM . . . B 2 -15.023 -21.946 -9.332 1 60.34 ? ND HEM 601 A 1 
HETATM 43 FE FE HEM . . . B 2 -15.426 -23.056 -11.011 1 57.47 ? FE HEM 601 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           285 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           43 
#