data_9BV6
#
_model_server_result.job_id            v3QN7pgI2QDm4AcvMF9CTQ 
_model_server_result.datetime_utc      '2025-06-18 03:35:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9bv6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":601}' 
#
_entry.id    9BV6 
#
_exptl.entry_id    9BV6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9BV6 
_cell.length_a            75.878 
_cell.length_b            100.692 
_cell.length_c            123.09 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9BV6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 421 A CYS 442 1_555 B FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? 
metalc ? metalc2 B FE HEM . A HEM 601 1_555 C N11 A1ASU . A A1ASU 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 173 n n 
CHA C4D HEM doub 174 n n 
CHA HHA HEM sing 175 n n 
CHB C4A HEM sing 176 n n 
CHB C1B HEM doub 177 n n 
CHB HHB HEM sing 178 n n 
CHC C4B HEM sing 179 n n 
CHC C1C HEM doub 180 n n 
CHC HHC HEM sing 181 n n 
CHD C4C HEM doub 182 n n 
CHD C1D HEM sing 183 n n 
CHD HHD HEM sing 184 n n 
C1A C2A HEM doub 185 n y 
C1A NA HEM sing 186 n y 
C2A C3A HEM sing 187 n y 
C2A CAA HEM sing 188 n n 
C3A C4A HEM doub 189 n y 
C3A CMA HEM sing 190 n n 
C4A NA HEM sing 191 n y 
CMA HMA HEM sing 192 n n 
CMA HMAA HEM sing 193 n n 
CMA HMAB HEM sing 194 n n 
CAA CBA HEM sing 195 n n 
CAA HAA HEM sing 196 n n 
CAA HAAA HEM sing 197 n n 
CBA CGA HEM sing 198 n n 
CBA HBA HEM sing 199 n n 
CBA HBAA HEM sing 200 n n 
CGA O1A HEM doub 201 n n 
CGA O2A HEM sing 202 n n 
C1B C2B HEM sing 203 n n 
C1B NB HEM sing 204 n n 
C2B C3B HEM doub 205 n n 
C2B CMB HEM sing 206 n n 
C3B C4B HEM sing 207 n n 
C3B CAB HEM sing 208 n n 
C4B NB HEM doub 209 n n 
CMB HMB HEM sing 210 n n 
CMB HMBA HEM sing 211 n n 
CMB HMBB HEM sing 212 n n 
CAB CBB HEM doub 213 n n 
CAB HAB HEM sing 214 n n 
CBB HBB HEM sing 215 n n 
CBB HBBA HEM sing 216 n n 
C1C C2C HEM sing 217 n y 
C1C NC HEM sing 218 n y 
C2C C3C HEM doub 219 n y 
C2C CMC HEM sing 220 n n 
C3C C4C HEM sing 221 n y 
C3C CAC HEM sing 222 n n 
C4C NC HEM sing 223 n y 
CMC HMC HEM sing 224 n n 
CMC HMCA HEM sing 225 n n 
CMC HMCB HEM sing 226 n n 
CAC CBC HEM doub 227 n n 
CAC HAC HEM sing 228 n n 
CBC HBC HEM sing 229 n n 
CBC HBCA HEM sing 230 n n 
C1D C2D HEM sing 231 n n 
C1D ND HEM doub 232 n n 
C2D C3D HEM doub 233 n n 
C2D CMD HEM sing 234 n n 
C3D C4D HEM sing 235 n n 
C3D CAD HEM sing 236 n n 
C4D ND HEM sing 237 n n 
CMD HMD HEM sing 238 n n 
CMD HMDA HEM sing 239 n n 
CMD HMDB HEM sing 240 n n 
CAD CBD HEM sing 241 n n 
CAD HAD HEM sing 242 n n 
CAD HADA HEM sing 243 n n 
CBD CGD HEM sing 244 n n 
CBD HBD HEM sing 245 n n 
CBD HBDA HEM sing 246 n n 
CGD O1D HEM doub 247 n n 
CGD O2D HEM sing 248 n n 
O2A H2A HEM sing 249 n n 
O2D H2D HEM sing 250 n n 
FE NA HEM sing 251 n n 
FE NB HEM sing 252 n n 
FE NC HEM sing 253 n n 
FE ND HEM sing 254 n n 
#
_atom_sites.entry_id                     9BV6 
_atom_sites.fract_transf_matrix[1][1]    0.013179 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009931 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008124 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEM A 1 601 601 HEM HEM . 
C 3 A1ASU A 1 602 602 A1ASU C82 . 
D 4 PG0 A 1 603 603 PG0 PG0 . 
E 5 HOH A 1 701 1 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . B 2 -15.154 -19.724 -8.521 1 69.77 ? CHA HEM 601 A 1 
HETATM 2 C CHB HEM . . . B 2 -15.748 -22.651 -12.426 1 71.75 ? CHB HEM 601 A 1 
HETATM 3 C CHC HEM . . . B 2 -16.354 -26.35 -9.351 1 74.78 ? CHC HEM 601 A 1 
HETATM 4 C CHD HEM . . . B 2 -15.352 -23.566 -5.541 1 73.94 ? CHD HEM 601 A 1 
HETATM 5 C C1A HEM . . . B 2 -15.29 -20.191 -9.822 1 69.95 ? C1A HEM 601 A 1 
HETATM 6 C C2A HEM . . . B 2 -15.253 -19.371 -11.015 1 68.28 ? C2A HEM 601 A 1 
HETATM 7 C C3A HEM . . . B 2 -15.411 -20.175 -12.077 1 68.17 ? C3A HEM 601 A 1 
HETATM 8 C C4A HEM . . . B 2 -15.561 -21.535 -11.611 1 68.29 ? C4A HEM 601 A 1 
HETATM 9 C CMA HEM . . . B 2 -15.44 -19.762 -13.555 1 67.82 ? CMA HEM 601 A 1 
HETATM 10 C CAA HEM . . . B 2 -15.052 -17.836 -11.065 1 65.24 ? CAA HEM 601 A 1 
HETATM 11 C CBA HEM . . . B 2 -13.57 -17.494 -11.097 1 62.81 ? CBA HEM 601 A 1 
HETATM 12 C CGA HEM . . . B 2 -13.396 -16.061 -11.488 1 63.74 ? CGA HEM 601 A 1 
HETATM 13 O O1A HEM . . . B 2 -12.283 -15.723 -12.003 1 65.67 ? O1A HEM 601 A 1 
HETATM 14 O O2A HEM . . . B 2 -14.223 -15.193 -11.09 1 69.9 ? O2A HEM 601 A 1 
HETATM 15 C C1B HEM . . . B 2 -15.997 -23.916 -11.931 1 73.61 ? C1B HEM 601 A 1 
HETATM 16 C C2B HEM . . . B 2 -16.322 -25.113 -12.705 1 75.12 ? C2B HEM 601 A 1 
HETATM 17 C C3B HEM . . . B 2 -16.486 -26.13 -11.843 1 74.81 ? C3B HEM 601 A 1 
HETATM 18 C C4B HEM . . . B 2 -16.272 -25.604 -10.503 1 75.03 ? C4B HEM 601 A 1 
HETATM 19 C CMB HEM . . . B 2 -16.429 -25.137 -14.255 1 76.75 ? CMB HEM 601 A 1 
HETATM 20 C CAB HEM . . . B 2 -16.829 -27.616 -12.068 1 79.23 ? CAB HEM 601 A 1 
HETATM 21 C CBB HEM . . . B 2 -17.324 -28.178 -13.173 1 86.1 ? CBB HEM 601 A 1 
HETATM 22 C C1C HEM . . . B 2 -16.13 -25.935 -8.071 1 75.34 ? C1C HEM 601 A 1 
HETATM 23 C C2C HEM . . . B 2 -16.194 -26.777 -6.905 1 76.3 ? C2C HEM 601 A 1 
HETATM 24 C C3C HEM . . . B 2 -15.917 -26.022 -5.831 1 75.08 ? C3C HEM 601 A 1 
HETATM 25 C C4C HEM . . . B 2 -15.671 -24.679 -6.294 1 76.31 ? C4C HEM 601 A 1 
HETATM 26 C CMC HEM . . . B 2 -16.521 -28.273 -6.955 1 80.05 ? CMC HEM 601 A 1 
HETATM 27 C CAC HEM . . . B 2 -15.866 -26.446 -4.354 1 74.84 ? CAC HEM 601 A 1 
HETATM 28 C CBC HEM . . . B 2 -14.808 -26.262 -3.573 1 85.69 ? CBC HEM 601 A 1 
HETATM 29 C C1D HEM . . . B 2 -15.239 -22.285 -6.03 1 70.95 ? C1D HEM 601 A 1 
HETATM 30 C C2D HEM . . . B 2 -15.027 -21.102 -5.24 1 72.48 ? C2D HEM 601 A 1 
HETATM 31 C C3D HEM . . . B 2 -14.966 -20.033 -6.034 1 72.47 ? C3D HEM 601 A 1 
HETATM 32 C C4D HEM . . . B 2 -15.144 -20.502 -7.399 1 70.18 ? C4D HEM 601 A 1 
HETATM 33 C CMD HEM . . . B 2 -14.895 -21.146 -3.705 1 75.21 ? CMD HEM 601 A 1 
HETATM 34 C CAD HEM . . . B 2 -14.759 -18.574 -5.599 1 72.31 ? CAD HEM 601 A 1 
HETATM 35 C CBD HEM . . . B 2 -13.282 -18.209 -5.646 1 71.6 ? CBD HEM 601 A 1 
HETATM 36 C CGD HEM . . . B 2 -12.999 -16.996 -4.786 1 73.51 ? CGD HEM 601 A 1 
HETATM 37 O O1D HEM . . . B 2 -13.867 -16.08 -4.78 1 75.27 ? O1D HEM 601 A 1 
HETATM 38 O O2D HEM . . . B 2 -11.95 -16.952 -4.075 1 72.79 ? O2D HEM 601 A 1 
HETATM 39 N NA HEM . . . B 2 -15.489 -21.501 -10.225 1 67.5 ? NA HEM 601 A 1 
HETATM 40 N NB HEM . . . B 2 -15.98 -24.265 -10.597 1 75.01 ? NB HEM 601 A 1 
HETATM 41 N NC HEM . . . B 2 -15.812 -24.665 -7.656 1 72.93 ? NC HEM 601 A 1 
HETATM 42 N ND HEM . . . B 2 -15.308 -21.883 -7.345 1 69.86 ? ND HEM 601 A 1 
HETATM 43 FE FE HEM . . . B 2 -15.603 -23.114 -8.96 1 70.96 ? FE HEM 601 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           325 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           43 
#