data_9BV7
#
_model_server_result.job_id            xYgh-AfhQ92MW4vBmRocnA 
_model_server_result.datetime_utc      '2025-06-18 03:52:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9bv7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":601}' 
#
_entry.id    9BV7 
#
_exptl.entry_id    9BV7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9BV7 
_cell.length_a            76.828 
_cell.length_b            101.944 
_cell.length_c            127.353 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9BV7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 421 A CYS 442 1_555 B FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? 
metalc ? metalc2 B FE HEM . A HEM 601 1_555 C N27 A1AST . A A1AST 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 181 n n 
CHA C4D HEM doub 182 n n 
CHA HHA HEM sing 183 n n 
CHB C4A HEM sing 184 n n 
CHB C1B HEM doub 185 n n 
CHB HHB HEM sing 186 n n 
CHC C4B HEM sing 187 n n 
CHC C1C HEM doub 188 n n 
CHC HHC HEM sing 189 n n 
CHD C4C HEM doub 190 n n 
CHD C1D HEM sing 191 n n 
CHD HHD HEM sing 192 n n 
C1A C2A HEM doub 193 n y 
C1A NA HEM sing 194 n y 
C2A C3A HEM sing 195 n y 
C2A CAA HEM sing 196 n n 
C3A C4A HEM doub 197 n y 
C3A CMA HEM sing 198 n n 
C4A NA HEM sing 199 n y 
CMA HMA HEM sing 200 n n 
CMA HMAA HEM sing 201 n n 
CMA HMAB HEM sing 202 n n 
CAA CBA HEM sing 203 n n 
CAA HAA HEM sing 204 n n 
CAA HAAA HEM sing 205 n n 
CBA CGA HEM sing 206 n n 
CBA HBA HEM sing 207 n n 
CBA HBAA HEM sing 208 n n 
CGA O1A HEM doub 209 n n 
CGA O2A HEM sing 210 n n 
C1B C2B HEM sing 211 n n 
C1B NB HEM sing 212 n n 
C2B C3B HEM doub 213 n n 
C2B CMB HEM sing 214 n n 
C3B C4B HEM sing 215 n n 
C3B CAB HEM sing 216 n n 
C4B NB HEM doub 217 n n 
CMB HMB HEM sing 218 n n 
CMB HMBA HEM sing 219 n n 
CMB HMBB HEM sing 220 n n 
CAB CBB HEM doub 221 n n 
CAB HAB HEM sing 222 n n 
CBB HBB HEM sing 223 n n 
CBB HBBA HEM sing 224 n n 
C1C C2C HEM sing 225 n y 
C1C NC HEM sing 226 n y 
C2C C3C HEM doub 227 n y 
C2C CMC HEM sing 228 n n 
C3C C4C HEM sing 229 n y 
C3C CAC HEM sing 230 n n 
C4C NC HEM sing 231 n y 
CMC HMC HEM sing 232 n n 
CMC HMCA HEM sing 233 n n 
CMC HMCB HEM sing 234 n n 
CAC CBC HEM doub 235 n n 
CAC HAC HEM sing 236 n n 
CBC HBC HEM sing 237 n n 
CBC HBCA HEM sing 238 n n 
C1D C2D HEM sing 239 n n 
C1D ND HEM doub 240 n n 
C2D C3D HEM doub 241 n n 
C2D CMD HEM sing 242 n n 
C3D C4D HEM sing 243 n n 
C3D CAD HEM sing 244 n n 
C4D ND HEM sing 245 n n 
CMD HMD HEM sing 246 n n 
CMD HMDA HEM sing 247 n n 
CMD HMDB HEM sing 248 n n 
CAD CBD HEM sing 249 n n 
CAD HAD HEM sing 250 n n 
CAD HADA HEM sing 251 n n 
CBD CGD HEM sing 252 n n 
CBD HBD HEM sing 253 n n 
CBD HBDA HEM sing 254 n n 
CGD O1D HEM doub 255 n n 
CGD O2D HEM sing 256 n n 
O2A H2A HEM sing 257 n n 
O2D H2D HEM sing 258 n n 
FE NA HEM sing 259 n n 
FE NB HEM sing 260 n n 
FE NC HEM sing 261 n n 
FE ND HEM sing 262 n n 
#
_atom_sites.entry_id                     9BV7 
_atom_sites.fract_transf_matrix[1][1]    0.013016 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009809 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007852 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEM A 1 601 501 HEM HEM . 
C 3 A1AST A 1 602 502 A1AST S15 . 
D 4 HOH A 1 701 1 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . B 2 -15.093 -19.866 -9.351 1 77.24 ? CHA HEM 601 A 1 
HETATM 2 C CHB HEM . . . B 2 -16.08 -22.674 -13.265 1 75 ? CHB HEM 601 A 1 
HETATM 3 C CHC HEM . . . B 2 -16.794 -26.398 -10.234 1 74.58 ? CHC HEM 601 A 1 
HETATM 4 C CHD HEM . . . B 2 -15.382 -23.76 -6.432 1 73.06 ? CHD HEM 601 A 1 
HETATM 5 C C1A HEM . . . B 2 -15.307 -20.291 -10.662 1 78.67 ? C1A HEM 601 A 1 
HETATM 6 C C2A HEM . . . B 2 -15.238 -19.462 -11.853 1 75.71 ? C2A HEM 601 A 1 
HETATM 7 C C3A HEM . . . B 2 -15.505 -20.236 -12.92 1 75.61 ? C3A HEM 601 A 1 
HETATM 8 C C4A HEM . . . B 2 -15.763 -21.583 -12.455 1 72.12 ? C4A HEM 601 A 1 
HETATM 9 C CMA HEM . . . B 2 -15.545 -19.8 -14.396 1 78.42 ? CMA HEM 601 A 1 
HETATM 10 C CAA HEM . . . B 2 -14.9 -17.951 -11.885 1 74.87 ? CAA HEM 601 A 1 
HETATM 11 C CBA HEM . . . B 2 -13.406 -17.764 -12.051 1 79.21 ? CBA HEM 601 A 1 
HETATM 12 C CGA HEM . . . B 2 -13.082 -16.337 -12.348 1 80.18 ? CGA HEM 601 A 1 
HETATM 13 O O1A HEM . . . B 2 -14.018 -15.473 -12.324 1 79.87 ? O1A HEM 601 A 1 
HETATM 14 O O2A HEM . . . B 2 -11.879 -16.017 -12.547 1 82.37 ? O2A HEM 601 A 1 
HETATM 15 C C1B HEM . . . B 2 -16.371 -23.938 -12.785 1 77.33 ? C1B HEM 601 A 1 
HETATM 16 C C2B HEM . . . B 2 -16.76 -25.103 -13.574 1 75.43 ? C2B HEM 601 A 1 
HETATM 17 C C3B HEM . . . B 2 -16.958 -26.125 -12.735 1 73.25 ? C3B HEM 601 A 1 
HETATM 18 C C4B HEM . . . B 2 -16.699 -25.642 -11.382 1 74.84 ? C4B HEM 601 A 1 
HETATM 19 C CMB HEM . . . B 2 -16.909 -25.114 -15.118 1 79.17 ? CMB HEM 601 A 1 
HETATM 20 C CAB HEM . . . B 2 -17.376 -27.572 -13.049 1 78.87 ? CAB HEM 601 A 1 
HETATM 21 C CBB HEM . . . B 2 -16.68 -28.423 -13.807 1 82.36 ? CBB HEM 601 A 1 
HETATM 22 C C1C HEM . . . B 2 -16.445 -26.023 -8.963 1 72.53 ? C1C HEM 601 A 1 
HETATM 23 C C2C HEM . . . B 2 -16.419 -26.891 -7.807 1 71.02 ? C2C HEM 601 A 1 
HETATM 24 C C3C HEM . . . B 2 -16.028 -26.175 -6.746 1 70.54 ? C3C HEM 601 A 1 
HETATM 25 C C4C HEM . . . B 2 -15.794 -24.829 -7.201 1 73.66 ? C4C HEM 601 A 1 
HETATM 26 C CMC HEM . . . B 2 -16.783 -28.378 -7.827 1 75.35 ? CMC HEM 601 A 1 
HETATM 27 C CAC HEM . . . B 2 -15.849 -26.656 -5.293 1 69.95 ? CAC HEM 601 A 1 
HETATM 28 C CBC HEM . . . B 2 -14.679 -26.621 -4.655 1 74.68 ? CBC HEM 601 A 1 
HETATM 29 C C1D HEM . . . B 2 -15.2 -22.479 -6.901 1 73.44 ? C1D HEM 601 A 1 
HETATM 30 C C2D HEM . . . B 2 -14.821 -21.341 -6.1 1 76.02 ? C2D HEM 601 A 1 
HETATM 31 C C3D HEM . . . B 2 -14.731 -20.261 -6.883 1 76.36 ? C3D HEM 601 A 1 
HETATM 32 C C4D HEM . . . B 2 -15.059 -20.675 -8.241 1 76.02 ? C4D HEM 601 A 1 
HETATM 33 C CMD HEM . . . B 2 -14.57 -21.428 -4.577 1 76.48 ? CMD HEM 601 A 1 
HETATM 34 C CAD HEM . . . B 2 -14.366 -18.827 -6.461 1 78.77 ? CAD HEM 601 A 1 
HETATM 35 C CBD HEM . . . B 2 -12.882 -18.693 -6.17 1 78.8 ? CBD HEM 601 A 1 
HETATM 36 C CGD HEM . . . B 2 -12.584 -17.284 -5.706 1 82.5 ? CGD HEM 601 A 1 
HETATM 37 O O1D HEM . . . B 2 -13.437 -16.4 -5.994 1 84.01 ? O1D HEM 601 A 1 
HETATM 38 O O2D HEM . . . B 2 -11.588 -17.057 -4.959 1 82.36 ? O2D HEM 601 A 1 
HETATM 39 N NA HEM . . . B 2 -15.631 -21.573 -11.074 1 74.62 ? NA HEM 601 A 1 
HETATM 40 N NB HEM . . . B 2 -16.346 -24.311 -11.458 1 76.32 ? NB HEM 601 A 1 
HETATM 41 N NC HEM . . . B 2 -16.054 -24.768 -8.548 1 72.85 ? NC HEM 601 A 1 
HETATM 42 N ND HEM . . . B 2 -15.338 -22.038 -8.203 1 72.59 ? ND HEM 601 A 1 
HETATM 43 FE FE HEM . . . B 2 -15.892 -23.18 -9.822 1 74.34 ? FE HEM 601 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           353 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           43 
#