data_9BV9 # _model_server_result.job_id eRKXJNiCVRyjPxcGZ8UH5Q _model_server_result.datetime_utc '2025-06-18 07:08:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9bv9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 9BV9 # _exptl.entry_id 9BV9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9BV9 _cell.length_a 77.044 _cell.length_b 100.902 _cell.length_c 128.19 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9BV9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 421 A CYS 442 1_555 B FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc2 B FE HEM . A HEM 601 1_555 C N25 A1ASR . A A1ASR 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 169 n n CHA C4D HEM doub 170 n n CHA HHA HEM sing 171 n n CHB C4A HEM sing 172 n n CHB C1B HEM doub 173 n n CHB HHB HEM sing 174 n n CHC C4B HEM sing 175 n n CHC C1C HEM doub 176 n n CHC HHC HEM sing 177 n n CHD C4C HEM doub 178 n n CHD C1D HEM sing 179 n n CHD HHD HEM sing 180 n n C1A C2A HEM doub 181 n y C1A NA HEM sing 182 n y C2A C3A HEM sing 183 n y C2A CAA HEM sing 184 n n C3A C4A HEM doub 185 n y C3A CMA HEM sing 186 n n C4A NA HEM sing 187 n y CMA HMA HEM sing 188 n n CMA HMAA HEM sing 189 n n CMA HMAB HEM sing 190 n n CAA CBA HEM sing 191 n n CAA HAA HEM sing 192 n n CAA HAAA HEM sing 193 n n CBA CGA HEM sing 194 n n CBA HBA HEM sing 195 n n CBA HBAA HEM sing 196 n n CGA O1A HEM doub 197 n n CGA O2A HEM sing 198 n n C1B C2B HEM sing 199 n n C1B NB HEM sing 200 n n C2B C3B HEM doub 201 n n C2B CMB HEM sing 202 n n C3B C4B HEM sing 203 n n C3B CAB HEM sing 204 n n C4B NB HEM doub 205 n n CMB HMB HEM sing 206 n n CMB HMBA HEM sing 207 n n CMB HMBB HEM sing 208 n n CAB CBB HEM doub 209 n n CAB HAB HEM sing 210 n n CBB HBB HEM sing 211 n n CBB HBBA HEM sing 212 n n C1C C2C HEM sing 213 n y C1C NC HEM sing 214 n y C2C C3C HEM doub 215 n y C2C CMC HEM sing 216 n n C3C C4C HEM sing 217 n y C3C CAC HEM sing 218 n n C4C NC HEM sing 219 n y CMC HMC HEM sing 220 n n CMC HMCA HEM sing 221 n n CMC HMCB HEM sing 222 n n CAC CBC HEM doub 223 n n CAC HAC HEM sing 224 n n CBC HBC HEM sing 225 n n CBC HBCA HEM sing 226 n n C1D C2D HEM sing 227 n n C1D ND HEM doub 228 n n C2D C3D HEM doub 229 n n C2D CMD HEM sing 230 n n C3D C4D HEM sing 231 n n C3D CAD HEM sing 232 n n C4D ND HEM sing 233 n n CMD HMD HEM sing 234 n n CMD HMDA HEM sing 235 n n CMD HMDB HEM sing 236 n n CAD CBD HEM sing 237 n n CAD HAD HEM sing 238 n n CAD HADA HEM sing 239 n n CBD CGD HEM sing 240 n n CBD HBD HEM sing 241 n n CBD HBDA HEM sing 242 n n CGD O1D HEM doub 243 n n CGD O2D HEM sing 244 n n O2A H2A HEM sing 245 n n O2D H2D HEM sing 246 n n FE NA HEM sing 247 n n FE NB HEM sing 248 n n FE NC HEM sing 249 n n FE ND HEM sing 250 n n # _atom_sites.entry_id 9BV9 _atom_sites.fract_transf_matrix[1][1] 0.01298 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009911 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007801 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 601 501 HEM HEM . C 3 A1ASR A 1 602 502 A1ASR CY8 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 -15.124 -19.829 -9.433 1 67.03 ? CHA HEM 601 A 1 HETATM 2 C CHB HEM . . . B 2 -16.039 -22.535 -13.431 1 66.91 ? CHB HEM 601 A 1 HETATM 3 C CHC HEM . . . B 2 -16.65 -26.343 -10.474 1 69.3 ? CHC HEM 601 A 1 HETATM 4 C CHD HEM . . . B 2 -15.118 -23.831 -6.648 1 67.81 ? CHD HEM 601 A 1 HETATM 5 C C1A HEM . . . B 2 -15.357 -20.211 -10.75 1 67.31 ? C1A HEM 601 A 1 HETATM 6 C C2A HEM . . . B 2 -15.373 -19.339 -11.909 1 67.43 ? C2A HEM 601 A 1 HETATM 7 C C3A HEM . . . B 2 -15.616 -20.083 -12.999 1 66.29 ? C3A HEM 601 A 1 HETATM 8 C C4A HEM . . . B 2 -15.777 -21.46 -12.583 1 65.29 ? C4A HEM 601 A 1 HETATM 9 C CMA HEM . . . B 2 -15.721 -19.595 -14.456 1 67.66 ? CMA HEM 601 A 1 HETATM 10 C CAA HEM . . . B 2 -15.138 -17.81 -11.905 1 67.48 ? CAA HEM 601 A 1 HETATM 11 C CBA HEM . . . B 2 -13.637 -17.564 -12.047 1 70.26 ? CBA HEM 601 A 1 HETATM 12 C CGA HEM . . . B 2 -13.329 -16.138 -12.37 1 70.04 ? CGA HEM 601 A 1 HETATM 13 O O1A HEM . . . B 2 -14.178 -15.246 -12.059 1 70.87 ? O1A HEM 601 A 1 HETATM 14 O O2A HEM . . . B 2 -12.134 -15.845 -12.649 1 71.67 ? O2A HEM 601 A 1 HETATM 15 C C1B HEM . . . B 2 -16.324 -23.808 -12.98 1 69.82 ? C1B HEM 601 A 1 HETATM 16 C C2B HEM . . . B 2 -16.744 -24.952 -13.786 1 70.61 ? C2B HEM 601 A 1 HETATM 17 C C3B HEM . . . B 2 -16.906 -26.001 -12.964 1 69.61 ? C3B HEM 601 A 1 HETATM 18 C C4B HEM . . . B 2 -16.595 -25.558 -11.608 1 68.84 ? C4B HEM 601 A 1 HETATM 19 C CMB HEM . . . B 2 -16.954 -24.916 -15.326 1 74.32 ? CMB HEM 601 A 1 HETATM 20 C CAB HEM . . . B 2 -17.344 -27.44 -13.284 1 73.43 ? CAB HEM 601 A 1 HETATM 21 C CBB HEM . . . B 2 -16.853 -28.215 -14.264 1 76.21 ? CBB HEM 601 A 1 HETATM 22 C C1C HEM . . . B 2 -16.266 -26.015 -9.204 1 70.6 ? C1C HEM 601 A 1 HETATM 23 C C2C HEM . . . B 2 -16.218 -26.927 -8.08 1 69.28 ? C2C HEM 601 A 1 HETATM 24 C C3C HEM . . . B 2 -15.799 -26.239 -7.002 1 69.51 ? C3C HEM 601 A 1 HETATM 25 C C4C HEM . . . B 2 -15.57 -24.877 -7.427 1 69.34 ? C4C HEM 601 A 1 HETATM 26 C CMC HEM . . . B 2 -16.597 -28.405 -8.172 1 71.61 ? CMC HEM 601 A 1 HETATM 27 C CAC HEM . . . B 2 -15.564 -26.727 -5.557 1 70.49 ? CAC HEM 601 A 1 HETATM 28 C CBC HEM . . . B 2 -14.727 -27.72 -5.246 1 74.53 ? CBC HEM 601 A 1 HETATM 29 C C1D HEM . . . B 2 -15.025 -22.523 -7.075 1 67.21 ? C1D HEM 601 A 1 HETATM 30 C C2D HEM . . . B 2 -14.701 -21.39 -6.239 1 67.93 ? C2D HEM 601 A 1 HETATM 31 C C3D HEM . . . B 2 -14.694 -20.283 -6.984 1 68.28 ? C3D HEM 601 A 1 HETATM 32 C C4D HEM . . . B 2 -15.021 -20.666 -8.35 1 67.31 ? C4D HEM 601 A 1 HETATM 33 C CMD HEM . . . B 2 -14.418 -21.513 -4.724 1 66.71 ? CMD HEM 601 A 1 HETATM 34 C CAD HEM . . . B 2 -14.421 -18.848 -6.51 1 71.08 ? CAD HEM 601 A 1 HETATM 35 C CBD HEM . . . B 2 -12.924 -18.629 -6.287 1 74.29 ? CBD HEM 601 A 1 HETATM 36 C CGD HEM . . . B 2 -12.659 -17.19 -5.911 1 75.46 ? CGD HEM 601 A 1 HETATM 37 O O1D HEM . . . B 2 -13.665 -16.439 -5.842 1 76.29 ? O1D HEM 601 A 1 HETATM 38 O O2D HEM . . . B 2 -11.503 -16.817 -5.553 1 77.26 ? O2D HEM 601 A 1 HETATM 39 N NA HEM . . . B 2 -15.612 -21.498 -11.2 1 65.85 ? NA HEM 601 A 1 HETATM 40 N NB HEM . . . B 2 -16.248 -24.223 -11.664 1 68.69 ? NB HEM 601 A 1 HETATM 41 N NC HEM . . . B 2 -15.864 -24.775 -8.763 1 68.97 ? NC HEM 601 A 1 HETATM 42 N ND HEM . . . B 2 -15.213 -22.044 -8.357 1 66.95 ? ND HEM 601 A 1 HETATM 43 FE FE HEM . . . B 2 -15.708 -23.158 -10.006 1 58.72 ? FE HEM 601 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 43 #