data_9BVA
#
_model_server_result.job_id            VZjSAi79GxWR3DCrhFpUIA 
_model_server_result.datetime_utc      '2025-06-18 03:59:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9bva 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":602}' 
#
_entry.id    9BVA 
#
_exptl.entry_id    9BVA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              408.805 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "N-[2-(2-chloroethyl)phenyl]-N'-[(2P)-2-(1H-imidazol-1-yl)-5-(trifluoromethyl)phenyl]urea" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9BVA 
_cell.length_a            76.782 
_cell.length_b            101.101 
_cell.length_c            125.636 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9BVA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 421 A CYS 442 1_555 B FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? 
metalc ? metalc2 B FE HEM . A HEM 601 1_555 C N17 A1ASQ . A A1ASQ 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? 
#
_chem_comp.formula           'C19 H16 Cl F3 N4 O' 
_chem_comp.formula_weight    408.805 
_chem_comp.id                A1ASQ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "N-[2-(2-chloroethyl)phenyl]-N'-[(2P)-2-(1H-imidazol-1-yl)-5-(trifluoromethyl)phenyl]urea" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CL24 C23 A1ASQ sing 1 n n 
C26 C27 A1ASQ doub 2 n y 
C26 C25 A1ASQ sing 3 n y 
C23 C22 A1ASQ sing 4 n n 
C27 C28 A1ASQ sing 5 n y 
C25 C21 A1ASQ doub 6 n y 
C28 C20 A1ASQ doub 7 n y 
C21 C20 A1ASQ sing 8 n y 
C21 C22 A1ASQ sing 9 n n 
C20 N19 A1ASQ sing 10 n n 
N19 C02 A1ASQ sing 11 n n 
C02 N03 A1ASQ sing 12 n n 
C02 O01 A1ASQ doub 13 n n 
C16 N17 A1ASQ sing 14 n y 
C16 C15 A1ASQ doub 15 n y 
N03 C04 A1ASQ sing 16 n n 
N17 C18 A1ASQ doub 17 n y 
C15 N14 A1ASQ sing 18 n y 
C18 N14 A1ASQ sing 19 n y 
N14 C13 A1ASQ sing 20 n n 
C04 C13 A1ASQ doub 21 n y 
C04 C05 A1ASQ sing 22 n y 
C13 C12 A1ASQ sing 23 n y 
C05 C06 A1ASQ doub 24 n y 
C12 C11 A1ASQ doub 25 n y 
F10 C07 A1ASQ sing 26 n n 
C06 C11 A1ASQ sing 27 n y 
C06 C07 A1ASQ sing 28 n n 
C07 F09 A1ASQ sing 29 n n 
C07 F08 A1ASQ sing 30 n n 
C25 H1 A1ASQ sing 31 n n 
C26 H2 A1ASQ sing 32 n n 
C27 H3 A1ASQ sing 33 n n 
C28 H4 A1ASQ sing 34 n n 
C11 H5 A1ASQ sing 35 n n 
C12 H6 A1ASQ sing 36 n n 
C15 H7 A1ASQ sing 37 n n 
C16 H8 A1ASQ sing 38 n n 
C22 H9 A1ASQ sing 39 n n 
C22 H10 A1ASQ sing 40 n n 
C18 H11 A1ASQ sing 41 n n 
C23 H12 A1ASQ sing 42 n n 
C23 H13 A1ASQ sing 43 n n 
C05 H14 A1ASQ sing 44 n n 
N03 H15 A1ASQ sing 45 n n 
N19 H16 A1ASQ sing 46 n n 
#
_atom_sites.entry_id                     9BVA 
_atom_sites.fract_transf_matrix[1][1]    0.013024 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009891 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00796 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEM A 1 601 501 HEM HEM . 
C 3 A1ASQ A 1 602 502 A1ASQ CY9 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C25 A1ASQ . . . C 3 -22.307 -20.445 -12.785 1 87.86 ? C25 A1ASQ 602 A 1 
HETATM 2 C C26 A1ASQ . . . C 3 -21.706 -21.638 -13.159 1 87.76 ? C26 A1ASQ 602 A 1 
HETATM 3 C C27 A1ASQ . . . C 3 -20.354 -21.838 -12.931 1 81.79 ? C27 A1ASQ 602 A 1 
HETATM 4 C C28 A1ASQ . . . C 3 -19.601 -20.843 -12.329 1 81.2 ? C28 A1ASQ 602 A 1 
HETATM 5 C C11 A1ASQ . . . C 3 -21.135 -20.179 -5.261 1 87.2 ? C11 A1ASQ 602 A 1 
HETATM 6 C C12 A1ASQ . . . C 3 -20.476 -21.151 -5.994 1 84 ? C12 A1ASQ 602 A 1 
HETATM 7 C C13 A1ASQ . . . C 3 -20.267 -20.931 -7.342 1 83.92 ? C13 A1ASQ 602 A 1 
HETATM 8 C C15 A1ASQ . . . C 3 -20.208 -22.778 -8.935 1 81.45 ? C15 A1ASQ 602 A 1 
HETATM 9 C C16 A1ASQ . . . C 3 -19.257 -23.477 -9.601 1 79.11 ? C16 A1ASQ 602 A 1 
HETATM 10 C C22 A1ASQ . . . C 3 -22.216 -18.132 -11.769 1 86.61 ? C22 A1ASQ 602 A 1 
HETATM 11 C C18 A1ASQ . . . C 3 -18.286 -21.987 -8.389 1 76.6 ? C18 A1ASQ 602 A 1 
HETATM 12 C C23 A1ASQ . . . C 3 -22.488 -17.205 -12.953 1 90.57 ? C23 A1ASQ 602 A 1 
HETATM 13 C C20 A1ASQ . . . C 3 -20.197 -19.647 -11.966 1 84.61 ? C20 A1ASQ 602 A 1 
HETATM 14 C C21 A1ASQ . . . C 3 -21.554 -19.448 -12.186 1 86.18 ? C21 A1ASQ 602 A 1 
HETATM 15 C C02 A1ASQ . . . C 3 -19.536 -18.628 -9.878 1 82.62 ? C02 A1ASQ 602 A 1 
HETATM 16 C C04 A1ASQ . . . C 3 -20.707 -19.777 -7.945 1 88.07 ? C04 A1ASQ 602 A 1 
HETATM 17 C C05 A1ASQ . . . C 3 -21.368 -18.81 -7.224 1 86.81 ? C05 A1ASQ 602 A 1 
HETATM 18 C C06 A1ASQ . . . C 3 -21.581 -19.017 -5.876 1 88.73 ? C06 A1ASQ 602 A 1 
HETATM 19 C C07 A1ASQ . . . C 3 -22.315 -17.948 -5.077 1 90.56 ? C07 A1ASQ 602 A 1 
HETATM 20 F F08 A1ASQ . . . C 3 -21.44 -17.312 -4.248 1 88.19 ? F08 A1ASQ 602 A 1 
HETATM 21 F F09 A1ASQ . . . C 3 -23.308 -18.535 -4.344 1 93.41 ? F09 A1ASQ 602 A 1 
HETATM 22 F F10 A1ASQ . . . C 3 -22.866 -17.049 -5.944 1 92.71 ? F10 A1ASQ 602 A 1 
HETATM 23 N N03 A1ASQ . . . C 3 -20.451 -19.627 -9.358 1 85.69 ? N03 A1ASQ 602 A 1 
HETATM 24 N N14 A1ASQ . . . C 3 -19.598 -21.886 -8.194 1 79.13 ? N14 A1ASQ 602 A 1 
HETATM 25 N N17 A1ASQ . . . C 3 -18.092 -22.983 -9.26 1 76.41 ? N17 A1ASQ 602 A 1 
HETATM 26 N N19 A1ASQ . . . C 3 -19.397 -18.622 -11.319 1 81.89 ? N19 A1ASQ 602 A 1 
HETATM 27 O O01 A1ASQ . . . C 3 -18.96 -17.866 -9.174 1 76.25 ? O01 A1ASQ 602 A 1 
HETATM 28 CL CL24 A1ASQ . . . C 3 -24.121 -17.482 -13.619 1 103.73 ? CL24 A1ASQ 602 A 1 
#
_model_server_stats.io_time_ms              47 
_model_server_stats.parse_time_ms           33 
_model_server_stats.create_model_time_ms    43 
_model_server_stats.query_time_ms           887 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           28 
#