data_9BVB
#
_model_server_result.job_id            DpW1LmsZKdeOgpfVPccvkg 
_model_server_result.datetime_utc      '2025-08-02 17:52:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9bvb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":601}' 
#
_entry.id    9BVB 
#
_exptl.entry_id    9BVB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9BVB 
_cell.length_a            77.503 
_cell.length_b            100.526 
_cell.length_c            129.331 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9BVB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 421 A CYS 442 1_555 B FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? 
metalc ? metalc2 B FE HEM . A HEM 601 1_555 C N20 A1ASP . A A1ASP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 170 n n 
CHA C4D HEM doub 171 n n 
CHA HHA HEM sing 172 n n 
CHB C4A HEM sing 173 n n 
CHB C1B HEM doub 174 n n 
CHB HHB HEM sing 175 n n 
CHC C4B HEM sing 176 n n 
CHC C1C HEM doub 177 n n 
CHC HHC HEM sing 178 n n 
CHD C4C HEM doub 179 n n 
CHD C1D HEM sing 180 n n 
CHD HHD HEM sing 181 n n 
C1A C2A HEM doub 182 n y 
C1A NA HEM sing 183 n y 
C2A C3A HEM sing 184 n y 
C2A CAA HEM sing 185 n n 
C3A C4A HEM doub 186 n y 
C3A CMA HEM sing 187 n n 
C4A NA HEM sing 188 n y 
CMA HMA HEM sing 189 n n 
CMA HMAA HEM sing 190 n n 
CMA HMAB HEM sing 191 n n 
CAA CBA HEM sing 192 n n 
CAA HAA HEM sing 193 n n 
CAA HAAA HEM sing 194 n n 
CBA CGA HEM sing 195 n n 
CBA HBA HEM sing 196 n n 
CBA HBAA HEM sing 197 n n 
CGA O1A HEM doub 198 n n 
CGA O2A HEM sing 199 n n 
C1B C2B HEM sing 200 n n 
C1B NB HEM sing 201 n n 
C2B C3B HEM doub 202 n n 
C2B CMB HEM sing 203 n n 
C3B C4B HEM sing 204 n n 
C3B CAB HEM sing 205 n n 
C4B NB HEM doub 206 n n 
CMB HMB HEM sing 207 n n 
CMB HMBA HEM sing 208 n n 
CMB HMBB HEM sing 209 n n 
CAB CBB HEM doub 210 n n 
CAB HAB HEM sing 211 n n 
CBB HBB HEM sing 212 n n 
CBB HBBA HEM sing 213 n n 
C1C C2C HEM sing 214 n y 
C1C NC HEM sing 215 n y 
C2C C3C HEM doub 216 n y 
C2C CMC HEM sing 217 n n 
C3C C4C HEM sing 218 n y 
C3C CAC HEM sing 219 n n 
C4C NC HEM sing 220 n y 
CMC HMC HEM sing 221 n n 
CMC HMCA HEM sing 222 n n 
CMC HMCB HEM sing 223 n n 
CAC CBC HEM doub 224 n n 
CAC HAC HEM sing 225 n n 
CBC HBC HEM sing 226 n n 
CBC HBCA HEM sing 227 n n 
C1D C2D HEM sing 228 n n 
C1D ND HEM doub 229 n n 
C2D C3D HEM doub 230 n n 
C2D CMD HEM sing 231 n n 
C3D C4D HEM sing 232 n n 
C3D CAD HEM sing 233 n n 
C4D ND HEM sing 234 n n 
CMD HMD HEM sing 235 n n 
CMD HMDA HEM sing 236 n n 
CMD HMDB HEM sing 237 n n 
CAD CBD HEM sing 238 n n 
CAD HAD HEM sing 239 n n 
CAD HADA HEM sing 240 n n 
CBD CGD HEM sing 241 n n 
CBD HBD HEM sing 242 n n 
CBD HBDA HEM sing 243 n n 
CGD O1D HEM doub 244 n n 
CGD O2D HEM sing 245 n n 
O2A H2A HEM sing 246 n n 
O2D H2D HEM sing 247 n n 
FE NA HEM sing 248 n n 
FE NB HEM sing 249 n n 
FE NC HEM sing 250 n n 
FE ND HEM sing 251 n n 
#
_atom_sites.entry_id                     9BVB 
_atom_sites.fract_transf_matrix[1][1]    0.012903 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009948 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007732 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEM A 1 601 501 HEM HEM . 
C 3 A1ASP A 1 602 502 A1ASP S75 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . B 2 -15.269 -19.804 -9.727 1 66.23 ? CHA HEM 601 A 1 
HETATM 2 C CHB HEM . . . B 2 -16.168 -22.769 -13.539 1 66.55 ? CHB HEM 601 A 1 
HETATM 3 C CHC HEM . . . B 2 -16.785 -26.372 -10.343 1 71.21 ? CHC HEM 601 A 1 
HETATM 4 C CHD HEM . . . B 2 -15.072 -23.644 -6.747 1 73.91 ? CHD HEM 601 A 1 
HETATM 5 C C1A HEM . . . B 2 -15.508 -20.278 -11.01 1 67.94 ? C1A HEM 601 A 1 
HETATM 6 C C2A HEM . . . B 2 -15.568 -19.468 -12.208 1 63.93 ? C2A HEM 601 A 1 
HETATM 7 C C3A HEM . . . B 2 -15.808 -20.281 -13.248 1 58.57 ? C3A HEM 601 A 1 
HETATM 8 C C4A HEM . . . B 2 -15.92 -21.638 -12.759 1 61.38 ? C4A HEM 601 A 1 
HETATM 9 C CMA HEM . . . B 2 -15.955 -19.874 -14.722 1 66.1 ? CMA HEM 601 A 1 
HETATM 10 C CAA HEM . . . B 2 -15.366 -17.935 -12.279 1 72.12 ? CAA HEM 601 A 1 
HETATM 11 C CBA HEM . . . B 2 -13.876 -17.626 -12.241 1 73.1 ? CBA HEM 601 A 1 
HETATM 12 C CGA HEM . . . B 2 -13.622 -16.196 -12.594 1 70.13 ? CGA HEM 601 A 1 
HETATM 13 O O1A HEM . . . B 2 -14.473 -15.336 -12.199 1 78.29 ? O1A HEM 601 A 1 
HETATM 14 O O2A HEM . . . B 2 -12.452 -15.844 -12.914 1 74.69 ? O2A HEM 601 A 1 
HETATM 15 C C1B HEM . . . B 2 -16.469 -24.008 -13.002 1 68.8 ? C1B HEM 601 A 1 
HETATM 16 C C2B HEM . . . B 2 -16.954 -25.185 -13.719 1 68.22 ? C2B HEM 601 A 1 
HETATM 17 C C3B HEM . . . B 2 -17.122 -26.178 -12.829 1 70.21 ? C3B HEM 601 A 1 
HETATM 18 C C4B HEM . . . B 2 -16.748 -25.654 -11.519 1 67.45 ? C4B HEM 601 A 1 
HETATM 19 C CMB HEM . . . B 2 -17.206 -25.212 -15.252 1 67.02 ? CMB HEM 601 A 1 
HETATM 20 C CAB HEM . . . B 2 -17.609 -27.632 -13.012 1 81.7 ? CAB HEM 601 A 1 
HETATM 21 C CBB HEM . . . B 2 -17.841 -28.274 -14.162 1 79.45 ? CBB HEM 601 A 1 
HETATM 22 C C1C HEM . . . B 2 -16.363 -25.973 -9.105 1 69.18 ? C1C HEM 601 A 1 
HETATM 23 C C2C HEM . . . B 2 -16.326 -26.794 -7.917 1 73.22 ? C2C HEM 601 A 1 
HETATM 24 C C3C HEM . . . B 2 -15.847 -26.044 -6.905 1 71.75 ? C3C HEM 601 A 1 
HETATM 25 C C4C HEM . . . B 2 -15.574 -24.734 -7.433 1 72.22 ? C4C HEM 601 A 1 
HETATM 26 C CMC HEM . . . B 2 -16.772 -28.263 -7.895 1 78.21 ? CMC HEM 601 A 1 
HETATM 27 C CAC HEM . . . B 2 -15.603 -26.409 -5.428 1 77.19 ? CAC HEM 601 A 1 
HETATM 28 C CBC HEM . . . B 2 -15.222 -27.613 -5.002 1 72.13 ? CBC HEM 601 A 1 
HETATM 29 C C1D HEM . . . B 2 -15.025 -22.359 -7.239 1 67.49 ? C1D HEM 601 A 1 
HETATM 30 C C2D HEM . . . B 2 -14.723 -21.167 -6.487 1 72.11 ? C2D HEM 601 A 1 
HETATM 31 C C3D HEM . . . B 2 -14.773 -20.105 -7.288 1 72.53 ? C3D HEM 601 A 1 
HETATM 32 C C4D HEM . . . B 2 -15.116 -20.58 -8.615 1 68.37 ? C4D HEM 601 A 1 
HETATM 33 C CMD HEM . . . B 2 -14.403 -21.18 -4.98 1 70.3 ? CMD HEM 601 A 1 
HETATM 34 C CAD HEM . . . B 2 -14.521 -18.642 -6.897 1 74.28 ? CAD HEM 601 A 1 
HETATM 35 C CBD HEM . . . B 2 -13.03 -18.435 -6.688 1 76.6 ? CBD HEM 601 A 1 
HETATM 36 C CGD HEM . . . B 2 -12.73 -17.108 -6.032 1 82.46 ? CGD HEM 601 A 1 
HETATM 37 O O1D HEM . . . B 2 -13.716 -16.411 -5.667 1 87.45 ? O1D HEM 601 A 1 
HETATM 38 O O2D HEM . . . B 2 -11.54 -16.847 -5.681 1 87.86 ? O2D HEM 601 A 1 
HETATM 39 N NA HEM . . . B 2 -15.738 -21.59 -11.383 1 62.41 ? NA HEM 601 A 1 
HETATM 40 N NB HEM . . . B 2 -16.346 -24.345 -11.672 1 66.12 ? NB HEM 601 A 1 
HETATM 41 N NC HEM . . . B 2 -15.904 -24.726 -8.763 1 70.16 ? NC HEM 601 A 1 
HETATM 42 N ND HEM . . . B 2 -15.249 -21.962 -8.537 1 64.69 ? ND HEM 601 A 1 
HETATM 43 FE FE HEM . . . B 2 -15.752 -23.191 -10.103 1 67.21 ? FE HEM 601 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           234 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           43 
#