data_9BVC
#
_model_server_result.job_id            xOWTcDYM0NBDrvcf6zaDbA 
_model_server_result.datetime_utc      '2025-08-04 00:01:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9bvc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":601}' 
#
_entry.id    9BVC 
#
_exptl.entry_id    9BVC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9BVC 
_cell.length_a            76.743 
_cell.length_b            101.705 
_cell.length_c            127.317 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9BVC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 421 A CYS 442 1_555 B FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? 
metalc ? metalc2 B FE HEM . A HEM 601 1_555 C N17 A1ASO . A A1ASO 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 184 n n 
CHA C4D HEM doub 185 n n 
CHA HHA HEM sing 186 n n 
CHB C4A HEM sing 187 n n 
CHB C1B HEM doub 188 n n 
CHB HHB HEM sing 189 n n 
CHC C4B HEM sing 190 n n 
CHC C1C HEM doub 191 n n 
CHC HHC HEM sing 192 n n 
CHD C4C HEM doub 193 n n 
CHD C1D HEM sing 194 n n 
CHD HHD HEM sing 195 n n 
C1A C2A HEM doub 196 n y 
C1A NA HEM sing 197 n y 
C2A C3A HEM sing 198 n y 
C2A CAA HEM sing 199 n n 
C3A C4A HEM doub 200 n y 
C3A CMA HEM sing 201 n n 
C4A NA HEM sing 202 n y 
CMA HMA HEM sing 203 n n 
CMA HMAA HEM sing 204 n n 
CMA HMAB HEM sing 205 n n 
CAA CBA HEM sing 206 n n 
CAA HAA HEM sing 207 n n 
CAA HAAA HEM sing 208 n n 
CBA CGA HEM sing 209 n n 
CBA HBA HEM sing 210 n n 
CBA HBAA HEM sing 211 n n 
CGA O1A HEM doub 212 n n 
CGA O2A HEM sing 213 n n 
C1B C2B HEM sing 214 n n 
C1B NB HEM sing 215 n n 
C2B C3B HEM doub 216 n n 
C2B CMB HEM sing 217 n n 
C3B C4B HEM sing 218 n n 
C3B CAB HEM sing 219 n n 
C4B NB HEM doub 220 n n 
CMB HMB HEM sing 221 n n 
CMB HMBA HEM sing 222 n n 
CMB HMBB HEM sing 223 n n 
CAB CBB HEM doub 224 n n 
CAB HAB HEM sing 225 n n 
CBB HBB HEM sing 226 n n 
CBB HBBA HEM sing 227 n n 
C1C C2C HEM sing 228 n y 
C1C NC HEM sing 229 n y 
C2C C3C HEM doub 230 n y 
C2C CMC HEM sing 231 n n 
C3C C4C HEM sing 232 n y 
C3C CAC HEM sing 233 n n 
C4C NC HEM sing 234 n y 
CMC HMC HEM sing 235 n n 
CMC HMCA HEM sing 236 n n 
CMC HMCB HEM sing 237 n n 
CAC CBC HEM doub 238 n n 
CAC HAC HEM sing 239 n n 
CBC HBC HEM sing 240 n n 
CBC HBCA HEM sing 241 n n 
C1D C2D HEM sing 242 n n 
C1D ND HEM doub 243 n n 
C2D C3D HEM doub 244 n n 
C2D CMD HEM sing 245 n n 
C3D C4D HEM sing 246 n n 
C3D CAD HEM sing 247 n n 
C4D ND HEM sing 248 n n 
CMD HMD HEM sing 249 n n 
CMD HMDA HEM sing 250 n n 
CMD HMDB HEM sing 251 n n 
CAD CBD HEM sing 252 n n 
CAD HAD HEM sing 253 n n 
CAD HADA HEM sing 254 n n 
CBD CGD HEM sing 255 n n 
CBD HBD HEM sing 256 n n 
CBD HBDA HEM sing 257 n n 
CGD O1D HEM doub 258 n n 
CGD O2D HEM sing 259 n n 
O2A H2A HEM sing 260 n n 
O2D H2D HEM sing 261 n n 
FE NA HEM sing 262 n n 
FE NB HEM sing 263 n n 
FE NC HEM sing 264 n n 
FE ND HEM sing 265 n n 
#
_atom_sites.entry_id                     9BVC 
_atom_sites.fract_transf_matrix[1][1]    0.013031 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009832 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007854 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEM A 1 601 501 HEM HEM . 
C 3 A1ASO A 1 602 502 A1ASO SJ1 . 
D 4 HOH A 1 701 2 HOH HOH . 
D 4 HOH A 2 702 1 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . B 2 -15.102 -20.007 -9.355 1 75.5 ? CHA HEM 601 A 1 
HETATM 2 C CHB HEM . . . B 2 -15.872 -22.762 -13.349 1 72.88 ? CHB HEM 601 A 1 
HETATM 3 C CHC HEM . . . B 2 -16.601 -26.516 -10.364 1 78.34 ? CHC HEM 601 A 1 
HETATM 4 C CHD HEM . . . B 2 -15.086 -23.983 -6.541 1 77.51 ? CHD HEM 601 A 1 
HETATM 5 C C1A HEM . . . B 2 -15.282 -20.414 -10.674 1 75.38 ? C1A HEM 601 A 1 
HETATM 6 C C2A HEM . . . B 2 -15.274 -19.547 -11.84 1 76.27 ? C2A HEM 601 A 1 
HETATM 7 C C3A HEM . . . B 2 -15.482 -20.305 -12.928 1 74.55 ? C3A HEM 601 A 1 
HETATM 8 C C4A HEM . . . B 2 -15.634 -21.68 -12.503 1 72.99 ? C4A HEM 601 A 1 
HETATM 9 C CMA HEM . . . B 2 -15.555 -19.83 -14.389 1 74.92 ? CMA HEM 601 A 1 
HETATM 10 C CAA HEM . . . B 2 -15.055 -18.013 -11.84 1 77.69 ? CAA HEM 601 A 1 
HETATM 11 C CBA HEM . . . B 2 -13.576 -17.672 -11.891 1 75.5 ? CBA HEM 601 A 1 
HETATM 12 C CGA HEM . . . B 2 -13.393 -16.257 -12.33 1 78.35 ? CGA HEM 601 A 1 
HETATM 13 O O1A HEM . . . B 2 -14.161 -15.369 -11.83 1 83.34 ? O1A HEM 601 A 1 
HETATM 14 O O2A HEM . . . B 2 -12.348 -15.944 -12.963 1 76.95 ? O2A HEM 601 A 1 
HETATM 15 C C1B HEM . . . B 2 -16.195 -24.023 -12.883 1 74.51 ? C1B HEM 601 A 1 
HETATM 16 C C2B HEM . . . B 2 -16.641 -25.165 -13.68 1 74.25 ? C2B HEM 601 A 1 
HETATM 17 C C3B HEM . . . B 2 -16.84 -26.195 -12.85 1 76.29 ? C3B HEM 601 A 1 
HETATM 18 C C4B HEM . . . B 2 -16.528 -25.738 -11.498 1 77.61 ? C4B HEM 601 A 1 
HETATM 19 C CMB HEM . . . B 2 -16.836 -25.143 -15.221 1 77.77 ? CMB HEM 601 A 1 
HETATM 20 C CAB HEM . . . B 2 -17.316 -27.63 -13.152 1 82.72 ? CAB HEM 601 A 1 
HETATM 21 C CBB HEM . . . B 2 -16.976 -28.378 -14.209 1 84.01 ? CBB HEM 601 A 1 
HETATM 22 C C1C HEM . . . B 2 -16.226 -26.181 -9.091 1 80.46 ? C1C HEM 601 A 1 
HETATM 23 C C2C HEM . . . B 2 -16.232 -27.078 -7.957 1 82.27 ? C2C HEM 601 A 1 
HETATM 24 C C3C HEM . . . B 2 -15.814 -26.394 -6.88 1 81.13 ? C3C HEM 601 A 1 
HETATM 25 C C4C HEM . . . B 2 -15.532 -25.043 -7.308 1 79.35 ? C4C HEM 601 A 1 
HETATM 26 C CMC HEM . . . B 2 -16.651 -28.552 -8.025 1 83.4 ? CMC HEM 601 A 1 
HETATM 27 C CAC HEM . . . B 2 -15.657 -26.916 -5.44 1 80.07 ? CAC HEM 601 A 1 
HETATM 28 C CBC HEM . . . B 2 -14.614 -26.636 -4.662 1 84.43 ? CBC HEM 601 A 1 
HETATM 29 C C1D HEM . . . B 2 -15.011 -22.676 -6.972 1 77.99 ? C1D HEM 601 A 1 
HETATM 30 C C2D HEM . . . B 2 -14.732 -21.529 -6.145 1 78.28 ? C2D HEM 601 A 1 
HETATM 31 C C3D HEM . . . B 2 -14.729 -20.425 -6.897 1 77.69 ? C3D HEM 601 A 1 
HETATM 32 C C4D HEM . . . B 2 -15.015 -20.829 -8.266 1 75.93 ? C4D HEM 601 A 1 
HETATM 33 C CMD HEM . . . B 2 -14.486 -21.644 -4.624 1 81.28 ? CMD HEM 601 A 1 
HETATM 34 C CAD HEM . . . B 2 -14.481 -18.987 -6.416 1 80.57 ? CAD HEM 601 A 1 
HETATM 35 C CBD HEM . . . B 2 -12.988 -18.711 -6.351 1 82.77 ? CBD HEM 601 A 1 
HETATM 36 C CGD HEM . . . B 2 -12.72 -17.39 -5.668 1 83.75 ? CGD HEM 601 A 1 
HETATM 37 O O1D HEM . . . B 2 -13.673 -16.564 -5.632 1 85.7 ? O1D HEM 601 A 1 
HETATM 38 O O2D HEM . . . B 2 -11.581 -17.158 -5.162 1 84.33 ? O2D HEM 601 A 1 
HETATM 39 N NA HEM . . . B 2 -15.505 -21.703 -11.12 1 73.32 ? NA HEM 601 A 1 
HETATM 40 N NB HEM . . . B 2 -16.141 -24.419 -11.562 1 77.45 ? NB HEM 601 A 1 
HETATM 41 N NC HEM . . . B 2 -15.793 -24.951 -8.652 1 78.38 ? NC HEM 601 A 1 
HETATM 42 N ND HEM . . . B 2 -15.178 -22.209 -8.259 1 77.02 ? ND HEM 601 A 1 
HETATM 43 FE FE HEM . . . B 2 -15.612 -23.351 -9.905 1 72.41 ? FE HEM 601 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           331 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           43 
#