data_9BVC
#
_model_server_result.job_id            L0ECFIntU6g9we6YbMoYpg 
_model_server_result.datetime_utc      '2025-08-03 14:40:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9bvc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":602}' 
#
_entry.id    9BVC 
#
_exptl.entry_id    9BVC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              486.874 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "N-(2-chlorophenyl)-N-[(3-hydroxyphenyl)methyl]-N'-[(2P)-2-(1H-imidazol-1-yl)-5-(trifluoromethyl)phenyl]urea" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9BVC 
_cell.length_a            76.743 
_cell.length_b            101.705 
_cell.length_c            127.317 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9BVC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 421 A CYS 442 1_555 B FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? 
metalc ? metalc2 B FE HEM . A HEM 601 1_555 C N17 A1ASO . A A1ASO 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? 
#
_chem_comp.formula           'C24 H18 Cl F3 N4 O2' 
_chem_comp.formula_weight    486.874 
_chem_comp.id                A1ASO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "N-(2-chlorophenyl)-N-[(3-hydroxyphenyl)methyl]-N'-[(2P)-2-(1H-imidazol-1-yl)-5-(trifluoromethyl)phenyl]urea" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C32 C31 A1ASO doub 1 n y 
C32 C33 A1ASO sing 2 n y 
C31 C29 A1ASO sing 3 n y 
C33 C34 A1ASO doub 4 n y 
C29 CL30 A1ASO sing 5 n n 
C29 C28 A1ASO doub 6 n y 
C34 C28 A1ASO sing 7 n y 
C20 C21 A1ASO sing 8 n n 
C20 N19 A1ASO sing 9 n n 
C28 N19 A1ASO sing 10 n n 
C22 C21 A1ASO doub 11 n y 
C22 C23 A1ASO sing 12 n y 
C21 C27 A1ASO sing 13 n y 
C23 C24 A1ASO doub 14 n y 
C27 C25 A1ASO doub 15 n y 
C24 C25 A1ASO sing 16 n y 
C25 O26 A1ASO sing 17 n n 
N19 C02 A1ASO sing 18 n n 
C02 N03 A1ASO sing 19 n n 
C02 O01 A1ASO doub 20 n n 
C16 C15 A1ASO doub 21 n y 
C16 N17 A1ASO sing 22 n y 
N03 C04 A1ASO sing 23 n n 
C15 N14 A1ASO sing 24 n y 
N17 C18 A1ASO doub 25 n y 
N14 C18 A1ASO sing 26 n y 
N14 C13 A1ASO sing 27 n n 
C04 C13 A1ASO doub 28 n y 
C04 C05 A1ASO sing 29 n y 
C13 C12 A1ASO sing 30 n y 
C05 C06 A1ASO doub 31 n y 
C12 C11 A1ASO doub 32 n y 
C06 C11 A1ASO sing 33 n y 
C06 C07 A1ASO sing 34 n n 
F08 C07 A1ASO sing 35 n n 
C07 F09 A1ASO sing 36 n n 
C07 F10 A1ASO sing 37 n n 
C11 H1 A1ASO sing 38 n n 
C12 H2 A1ASO sing 39 n n 
C15 H3 A1ASO sing 40 n n 
C16 H4 A1ASO sing 41 n n 
C18 H5 A1ASO sing 42 n n 
C05 H6 A1ASO sing 43 n n 
C20 H7 A1ASO sing 44 n n 
C20 H8 A1ASO sing 45 n n 
C22 H9 A1ASO sing 46 n n 
C23 H10 A1ASO sing 47 n n 
C24 H11 A1ASO sing 48 n n 
C27 H12 A1ASO sing 49 n n 
C31 H13 A1ASO sing 50 n n 
C32 H14 A1ASO sing 51 n n 
C33 H15 A1ASO sing 52 n n 
C34 H16 A1ASO sing 53 n n 
N03 H17 A1ASO sing 54 n n 
O26 H18 A1ASO sing 55 n n 
#
_atom_sites.entry_id                     9BVC 
_atom_sites.fract_transf_matrix[1][1]    0.013031 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009832 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007854 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEM A 1 601 501 HEM HEM . 
C 3 A1ASO A 1 602 502 A1ASO SJ1 . 
D 4 HOH A 1 701 2 HOH HOH . 
D 4 HOH A 2 702 1 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C11 A1ASO . . . C 3 -21.249 -20.471 -5.432 1 94.62 ? C11 A1ASO 602 A 1 
HETATM 2 C C12 A1ASO . . . C 3 -20.517 -21.386 -6.206 1 93.61 ? C12 A1ASO 602 A 1 
HETATM 3 C C13 A1ASO . . . C 3 -20.291 -21.136 -7.574 1 90.88 ? C13 A1ASO 602 A 1 
HETATM 4 C C15 A1ASO . . . C 3 -20.012 -23.03 -9.29 1 83.74 ? C15 A1ASO 602 A 1 
HETATM 5 C C16 A1ASO . . . C 3 -18.906 -23.696 -9.813 1 80.79 ? C16 A1ASO 602 A 1 
HETATM 6 C C18 A1ASO . . . C 3 -18.12 -22.202 -8.373 1 82.31 ? C18 A1ASO 602 A 1 
HETATM 7 C C02 A1ASO . . . C 3 -19.769 -18.786 -10.238 1 87.47 ? C02 A1ASO 602 A 1 
HETATM 8 C C04 A1ASO . . . C 3 -20.784 -19.979 -8.19 1 90.6 ? C04 A1ASO 602 A 1 
HETATM 9 C C05 A1ASO . . . C 3 -21.514 -19.076 -7.415 1 94.26 ? C05 A1ASO 602 A 1 
HETATM 10 C C06 A1ASO . . . C 3 -21.749 -19.313 -6.053 1 98.24 ? C06 A1ASO 602 A 1 
HETATM 11 C C07 A1ASO . . . C 3 -22.552 -18.293 -5.221 1 100.67 ? C07 A1ASO 602 A 1 
HETATM 12 C C20 A1ASO . . . C 3 -18.822 -17.778 -12.415 1 87.77 ? C20 A1ASO 602 A 1 
HETATM 13 C C21 A1ASO . . . C 3 -19.217 -16.311 -12.322 1 89.49 ? C21 A1ASO 602 A 1 
HETATM 14 C C22 A1ASO . . . C 3 -20.568 -15.952 -12.339 1 90.9 ? C22 A1ASO 602 A 1 
HETATM 15 C C23 A1ASO . . . C 3 -20.952 -14.599 -12.263 1 89 ? C23 A1ASO 602 A 1 
HETATM 16 C C24 A1ASO . . . C 3 -19.99 -13.575 -12.174 1 91.52 ? C24 A1ASO 602 A 1 
HETATM 17 C C25 A1ASO . . . C 3 -18.642 -13.961 -12.164 1 91.6 ? C25 A1ASO 602 A 1 
HETATM 18 C C27 A1ASO . . . C 3 -18.249 -15.289 -12.238 1 90.04 ? C27 A1ASO 602 A 1 
HETATM 19 C C28 A1ASO . . . C 3 -20.154 -19.94 -12.402 1 85.95 ? C28 A1ASO 602 A 1 
HETATM 20 C C29 A1ASO . . . C 3 -21.493 -19.975 -12.825 1 88.53 ? C29 A1ASO 602 A 1 
HETATM 21 C C31 A1ASO . . . C 3 -22.074 -21.059 -13.523 1 85.16 ? C31 A1ASO 602 A 1 
HETATM 22 C C32 A1ASO . . . C 3 -21.285 -22.191 -13.805 1 87.75 ? C32 A1ASO 602 A 1 
HETATM 23 C C33 A1ASO . . . C 3 -19.941 -22.21 -13.387 1 81.24 ? C33 A1ASO 602 A 1 
HETATM 24 C C34 A1ASO . . . C 3 -19.397 -21.113 -12.694 1 76.89 ? C34 A1ASO 602 A 1 
HETATM 25 F F08 A1ASO . . . C 3 -23.333 -17.428 -5.961 1 101.52 ? F08 A1ASO 602 A 1 
HETATM 26 F F09 A1ASO . . . C 3 -21.826 -17.423 -4.472 1 96.84 ? F09 A1ASO 602 A 1 
HETATM 27 F F10 A1ASO . . . C 3 -23.424 -18.827 -4.343 1 102.72 ? F10 A1ASO 602 A 1 
HETATM 28 N N03 A1ASO . . . C 3 -20.515 -19.811 -9.586 1 86.55 ? N03 A1ASO 602 A 1 
HETATM 29 N N14 A1ASO . . . C 3 -19.509 -22.113 -8.374 1 82.06 ? N14 A1ASO 602 A 1 
HETATM 30 N N17 A1ASO . . . C 3 -17.734 -23.18 -9.238 1 81.32 ? N17 A1ASO 602 A 1 
HETATM 31 N N19 A1ASO . . . C 3 -19.583 -18.809 -11.656 1 87.88 ? N19 A1ASO 602 A 1 
HETATM 32 O O01 A1ASO . . . C 3 -19.319 -17.876 -9.516 1 87.8 ? O01 A1ASO 602 A 1 
HETATM 33 O O26 A1ASO . . . C 3 -17.616 -13.003 -12.079 1 89.76 ? O26 A1ASO 602 A 1 
HETATM 34 CL CL30 A1ASO . . . C 3 -22.614 -18.629 -12.545 1 99.17 ? CL30 A1ASO 602 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           280 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           34 
#