data_9BXK # _model_server_result.job_id cVwJRHHIGbuaL5R7YV3R5g _model_server_result.datetime_utc '2025-02-06 04:45:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9bxk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 9BXK # _exptl.entry_id 9BXK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 234.115 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-selanyl-L-histidine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9BXK _cell.length_a 83.838 _cell.length_b 90.058 _cell.length_c 80.321 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9BXK _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall 'C 2c 2' _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H9 N3 O2 Se' _chem_comp.formula_weight 234.115 _chem_comp.id A1AS0 _chem_comp.mon_nstd_flag n _chem_comp.name 5-selanyl-L-histidine _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA A1AS0 sing 1 n n CA C A1AS0 sing 2 n n CA CB A1AS0 sing 3 n n O C A1AS0 doub 4 n n C OXT A1AS0 sing 5 n n CB CG A1AS0 sing 6 n n CG ND1 A1AS0 sing 7 n y CG CD2 A1AS0 doub 8 n y SE2 CD2 A1AS0 sing 9 n n ND1 CE1 A1AS0 sing 10 n y CD2 NE2 A1AS0 sing 11 n y CE1 NE2 A1AS0 doub 12 n y N H A1AS0 sing 13 n n N H2 A1AS0 sing 14 n n CA HA A1AS0 sing 15 n n CB HB2 A1AS0 sing 16 n n CB HB3 A1AS0 sing 17 n n ND1 HD1 A1AS0 sing 18 n n CE1 HE1 A1AS0 sing 19 n n SE2 H10 A1AS0 sing 20 n n OXT HXT A1AS0 sing 21 n n # _atom_sites.entry_id 9BXK _atom_sites.fract_transf_matrix[1][1] 0.011928 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011104 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01245 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SAH A 1 301 301 SAH SAH . C 3 A1AS0 A 1 302 302 A1AS0 S4H . D 4 EDO A 1 303 401 EDO EDO . E 5 HOH A 1 401 57 HOH HOH . E 5 HOH A 2 402 9 HOH HOH . E 5 HOH A 3 403 52 HOH HOH . E 5 HOH A 4 404 127 HOH HOH . E 5 HOH A 5 405 31 HOH HOH . E 5 HOH A 6 406 59 HOH HOH . E 5 HOH A 7 407 36 HOH HOH . E 5 HOH A 8 408 230 HOH HOH . E 5 HOH A 9 409 128 HOH HOH . E 5 HOH A 10 410 143 HOH HOH . E 5 HOH A 11 411 155 HOH HOH . E 5 HOH A 12 412 51 HOH HOH . E 5 HOH A 13 413 33 HOH HOH . E 5 HOH A 14 414 42 HOH HOH . E 5 HOH A 15 415 186 HOH HOH . E 5 HOH A 16 416 212 HOH HOH . E 5 HOH A 17 417 88 HOH HOH . E 5 HOH A 18 418 100 HOH HOH . E 5 HOH A 19 419 153 HOH HOH . E 5 HOH A 20 420 157 HOH HOH . E 5 HOH A 21 421 28 HOH HOH . E 5 HOH A 22 422 289 HOH HOH . E 5 HOH A 23 423 71 HOH HOH . E 5 HOH A 24 424 118 HOH HOH . E 5 HOH A 25 425 229 HOH HOH . E 5 HOH A 26 426 41 HOH HOH . E 5 HOH A 27 427 282 HOH HOH . E 5 HOH A 28 428 53 HOH HOH . E 5 HOH A 29 429 108 HOH HOH . E 5 HOH A 30 430 141 HOH HOH . E 5 HOH A 31 431 35 HOH HOH . E 5 HOH A 32 432 219 HOH HOH . E 5 HOH A 33 433 256 HOH HOH . E 5 HOH A 34 434 182 HOH HOH . E 5 HOH A 35 435 104 HOH HOH . E 5 HOH A 36 436 112 HOH HOH . E 5 HOH A 37 437 8 HOH HOH . E 5 HOH A 38 438 45 HOH HOH . E 5 HOH A 39 439 13 HOH HOH . E 5 HOH A 40 440 7 HOH HOH . E 5 HOH A 41 441 226 HOH HOH . E 5 HOH A 42 442 115 HOH HOH . E 5 HOH A 43 443 103 HOH HOH . E 5 HOH A 44 444 90 HOH HOH . E 5 HOH A 45 445 142 HOH HOH . E 5 HOH A 46 446 69 HOH HOH . E 5 HOH A 47 447 11 HOH HOH . E 5 HOH A 48 448 168 HOH HOH . E 5 HOH A 49 449 129 HOH HOH . E 5 HOH A 50 450 87 HOH HOH . E 5 HOH A 51 451 2 HOH HOH . E 5 HOH A 52 452 172 HOH HOH . E 5 HOH A 53 453 18 HOH HOH . E 5 HOH A 54 454 223 HOH HOH . E 5 HOH A 55 455 232 HOH HOH . E 5 HOH A 56 456 81 HOH HOH . E 5 HOH A 57 457 75 HOH HOH . E 5 HOH A 58 458 160 HOH HOH . E 5 HOH A 59 459 70 HOH HOH . E 5 HOH A 60 460 39 HOH HOH . E 5 HOH A 61 461 4 HOH HOH . E 5 HOH A 62 462 225 HOH HOH . E 5 HOH A 63 463 63 HOH HOH . E 5 HOH A 64 464 43 HOH HOH . E 5 HOH A 65 465 62 HOH HOH . E 5 HOH A 66 466 101 HOH HOH . E 5 HOH A 67 467 307 HOH HOH . E 5 HOH A 68 468 107 HOH HOH . E 5 HOH A 69 469 61 HOH HOH . E 5 HOH A 70 470 292 HOH HOH . E 5 HOH A 71 471 10 HOH HOH . E 5 HOH A 72 472 6 HOH HOH . E 5 HOH A 73 473 34 HOH HOH . E 5 HOH A 74 474 80 HOH HOH . E 5 HOH A 75 475 21 HOH HOH . E 5 HOH A 76 476 213 HOH HOH . E 5 HOH A 77 477 136 HOH HOH . E 5 HOH A 78 478 38 HOH HOH . E 5 HOH A 79 479 310 HOH HOH . E 5 HOH A 80 480 22 HOH HOH . E 5 HOH A 81 481 89 HOH HOH . E 5 HOH A 82 482 68 HOH HOH . E 5 HOH A 83 483 96 HOH HOH . E 5 HOH A 84 484 228 HOH HOH . E 5 HOH A 85 485 308 HOH HOH . E 5 HOH A 86 486 12 HOH HOH . E 5 HOH A 87 487 146 HOH HOH . E 5 HOH A 88 488 3 HOH HOH . E 5 HOH A 89 489 110 HOH HOH . E 5 HOH A 90 490 247 HOH HOH . E 5 HOH A 91 491 281 HOH HOH . E 5 HOH A 92 492 29 HOH HOH . E 5 HOH A 93 493 158 HOH HOH . E 5 HOH A 94 494 102 HOH HOH . E 5 HOH A 95 495 167 HOH HOH . E 5 HOH A 96 496 37 HOH HOH . E 5 HOH A 97 497 185 HOH HOH . E 5 HOH A 98 498 176 HOH HOH . E 5 HOH A 99 499 14 HOH HOH . E 5 HOH A 100 500 196 HOH HOH . E 5 HOH A 101 501 98 HOH HOH . E 5 HOH A 102 502 309 HOH HOH . E 5 HOH A 103 503 137 HOH HOH . E 5 HOH A 104 504 262 HOH HOH . E 5 HOH A 105 505 54 HOH HOH . E 5 HOH A 106 506 50 HOH HOH . E 5 HOH A 107 507 264 HOH HOH . E 5 HOH A 108 508 82 HOH HOH . E 5 HOH A 109 509 20 HOH HOH . E 5 HOH A 110 510 15 HOH HOH . E 5 HOH A 111 511 119 HOH HOH . E 5 HOH A 112 512 79 HOH HOH . E 5 HOH A 113 513 74 HOH HOH . E 5 HOH A 114 514 221 HOH HOH . E 5 HOH A 115 515 16 HOH HOH . E 5 HOH A 116 516 73 HOH HOH . E 5 HOH A 117 517 48 HOH HOH . E 5 HOH A 118 518 122 HOH HOH . E 5 HOH A 119 519 91 HOH HOH . E 5 HOH A 120 520 23 HOH HOH . E 5 HOH A 121 521 84 HOH HOH . E 5 HOH A 122 522 17 HOH HOH . E 5 HOH A 123 523 302 HOH HOH . E 5 HOH A 124 524 124 HOH HOH . E 5 HOH A 125 525 144 HOH HOH . E 5 HOH A 126 526 192 HOH HOH . E 5 HOH A 127 527 317 HOH HOH . E 5 HOH A 128 528 27 HOH HOH . E 5 HOH A 129 529 147 HOH HOH . E 5 HOH A 130 530 93 HOH HOH . E 5 HOH A 131 531 5 HOH HOH . E 5 HOH A 132 532 235 HOH HOH . E 5 HOH A 133 533 32 HOH HOH . E 5 HOH A 134 534 240 HOH HOH . E 5 HOH A 135 535 145 HOH HOH . E 5 HOH A 136 536 297 HOH HOH . E 5 HOH A 137 537 133 HOH HOH . E 5 HOH A 138 538 175 HOH HOH . E 5 HOH A 139 539 184 HOH HOH . E 5 HOH A 140 540 238 HOH HOH . E 5 HOH A 141 541 231 HOH HOH . E 5 HOH A 142 542 26 HOH HOH . E 5 HOH A 143 543 85 HOH HOH . E 5 HOH A 144 544 178 HOH HOH . E 5 HOH A 145 545 60 HOH HOH . E 5 HOH A 146 546 120 HOH HOH . E 5 HOH A 147 547 207 HOH HOH . E 5 HOH A 148 548 86 HOH HOH . E 5 HOH A 149 549 30 HOH HOH . E 5 HOH A 150 550 106 HOH HOH . E 5 HOH A 151 551 170 HOH HOH . E 5 HOH A 152 552 65 HOH HOH . E 5 HOH A 153 553 151 HOH HOH . E 5 HOH A 154 554 105 HOH HOH . E 5 HOH A 155 555 19 HOH HOH . E 5 HOH A 156 556 149 HOH HOH . E 5 HOH A 157 557 165 HOH HOH . E 5 HOH A 158 558 195 HOH HOH . E 5 HOH A 159 559 46 HOH HOH . E 5 HOH A 160 560 169 HOH HOH . E 5 HOH A 161 561 72 HOH HOH . E 5 HOH A 162 562 161 HOH HOH . E 5 HOH A 163 563 123 HOH HOH . E 5 HOH A 164 564 64 HOH HOH . E 5 HOH A 165 565 275 HOH HOH . E 5 HOH A 166 566 95 HOH HOH . E 5 HOH A 167 567 117 HOH HOH . E 5 HOH A 168 568 181 HOH HOH . E 5 HOH A 169 569 24 HOH HOH . E 5 HOH A 170 570 250 HOH HOH . E 5 HOH A 171 571 174 HOH HOH . E 5 HOH A 172 572 171 HOH HOH . E 5 HOH A 173 573 56 HOH HOH . E 5 HOH A 174 574 249 HOH HOH . E 5 HOH A 175 575 40 HOH HOH . E 5 HOH A 176 576 138 HOH HOH . E 5 HOH A 177 577 47 HOH HOH . E 5 HOH A 178 578 67 HOH HOH . E 5 HOH A 179 579 77 HOH HOH . E 5 HOH A 180 580 92 HOH HOH . E 5 HOH A 181 581 255 HOH HOH . E 5 HOH A 182 582 113 HOH HOH . E 5 HOH A 183 583 159 HOH HOH . E 5 HOH A 184 584 154 HOH HOH . E 5 HOH A 185 585 166 HOH HOH . E 5 HOH A 186 586 162 HOH HOH . E 5 HOH A 187 587 163 HOH HOH . E 5 HOH A 188 588 135 HOH HOH . E 5 HOH A 189 589 217 HOH HOH . E 5 HOH A 190 590 311 HOH HOH . E 5 HOH A 191 591 78 HOH HOH . E 5 HOH A 192 592 216 HOH HOH . E 5 HOH A 193 593 156 HOH HOH . E 5 HOH A 194 594 224 HOH HOH . E 5 HOH A 195 595 198 HOH HOH . E 5 HOH A 196 596 251 HOH HOH . E 5 HOH A 197 597 152 HOH HOH . E 5 HOH A 198 598 209 HOH HOH . E 5 HOH A 199 599 76 HOH HOH . E 5 HOH A 200 600 301 HOH HOH . E 5 HOH A 201 601 265 HOH HOH . E 5 HOH A 202 602 243 HOH HOH . E 5 HOH A 203 603 199 HOH HOH . E 5 HOH A 204 604 293 HOH HOH . E 5 HOH A 205 605 111 HOH HOH . E 5 HOH A 206 606 239 HOH HOH . E 5 HOH A 207 607 193 HOH HOH . E 5 HOH A 208 608 197 HOH HOH . E 5 HOH A 209 609 268 HOH HOH . E 5 HOH A 210 610 300 HOH HOH . E 5 HOH A 211 611 237 HOH HOH . E 5 HOH A 212 612 200 HOH HOH . E 5 HOH A 213 613 66 HOH HOH . E 5 HOH A 214 614 179 HOH HOH . E 5 HOH A 215 615 242 HOH HOH . E 5 HOH A 216 616 208 HOH HOH . E 5 HOH A 217 617 253 HOH HOH . E 5 HOH A 218 618 140 HOH HOH . E 5 HOH A 219 619 257 HOH HOH . E 5 HOH A 220 620 304 HOH HOH . E 5 HOH A 221 621 164 HOH HOH . E 5 HOH A 222 622 220 HOH HOH . E 5 HOH A 223 623 49 HOH HOH . E 5 HOH A 224 624 180 HOH HOH . E 5 HOH A 225 625 285 HOH HOH . E 5 HOH A 226 626 191 HOH HOH . E 5 HOH A 227 627 234 HOH HOH . E 5 HOH A 228 628 177 HOH HOH . E 5 HOH A 229 629 187 HOH HOH . E 5 HOH A 230 630 305 HOH HOH . E 5 HOH A 231 631 258 HOH HOH . E 5 HOH A 232 632 210 HOH HOH . E 5 HOH A 233 633 272 HOH HOH . E 5 HOH A 234 634 121 HOH HOH . E 5 HOH A 235 635 132 HOH HOH . E 5 HOH A 236 636 222 HOH HOH . E 5 HOH A 237 637 148 HOH HOH . E 5 HOH A 238 638 274 HOH HOH . E 5 HOH A 239 639 214 HOH HOH . E 5 HOH A 240 640 58 HOH HOH . E 5 HOH A 241 641 316 HOH HOH . E 5 HOH A 242 642 313 HOH HOH . E 5 HOH A 243 643 315 HOH HOH . E 5 HOH A 244 644 273 HOH HOH . E 5 HOH A 245 645 130 HOH HOH . E 5 HOH A 246 646 267 HOH HOH . E 5 HOH A 247 647 306 HOH HOH . E 5 HOH A 248 648 314 HOH HOH . E 5 HOH A 249 649 277 HOH HOH . E 5 HOH A 250 650 246 HOH HOH . E 5 HOH A 251 651 131 HOH HOH . E 5 HOH A 252 652 252 HOH HOH . E 5 HOH A 253 653 312 HOH HOH . E 5 HOH A 254 654 83 HOH HOH . E 5 HOH A 255 655 116 HOH HOH . E 5 HOH A 256 656 269 HOH HOH . E 5 HOH A 257 657 126 HOH HOH . E 5 HOH A 258 658 194 HOH HOH . E 5 HOH A 259 659 44 HOH HOH . E 5 HOH A 260 660 202 HOH HOH . E 5 HOH A 261 661 25 HOH HOH . E 5 HOH A 262 662 125 HOH HOH . E 5 HOH A 263 663 245 HOH HOH . E 5 HOH A 264 664 173 HOH HOH . E 5 HOH A 265 665 188 HOH HOH . E 5 HOH A 266 666 266 HOH HOH . E 5 HOH A 267 667 109 HOH HOH . E 5 HOH A 268 668 201 HOH HOH . E 5 HOH A 269 669 303 HOH HOH . E 5 HOH A 270 670 114 HOH HOH . E 5 HOH A 271 671 94 HOH HOH . E 5 HOH A 272 672 248 HOH HOH . E 5 HOH A 273 673 134 HOH HOH . E 5 HOH A 274 674 99 HOH HOH . E 5 HOH A 275 675 189 HOH HOH . E 5 HOH A 276 676 261 HOH HOH . E 5 HOH A 277 677 288 HOH HOH . E 5 HOH A 278 678 55 HOH HOH . E 5 HOH A 279 679 263 HOH HOH . E 5 HOH A 280 680 233 HOH HOH . E 5 HOH A 281 681 190 HOH HOH . E 5 HOH A 282 682 139 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N A1AS0 . . . C 3 -18.972 -5.74 3.377 1 17.33 ? N A1AS0 302 A 1 HETATM 2 C CA A1AS0 . . . C 3 -18.783 -7.213 3.446 1 19.26 ? CA A1AS0 302 A 1 HETATM 3 C C A1AS0 . . . C 3 -20.1 -7.877 3.842 1 17.57 ? C A1AS0 302 A 1 HETATM 4 O O A1AS0 . . . C 3 -20.161 -9.127 3.755 1 19.16 ? O A1AS0 302 A 1 HETATM 5 C CB A1AS0 . . . C 3 -17.698 -7.597 4.463 1 16.04 ? CB A1AS0 302 A 1 HETATM 6 C CG A1AS0 . . . C 3 -18.152 -7.627 5.892 1 17.51 ? CG A1AS0 302 A 1 HETATM 7 N ND1 A1AS0 . . . C 3 -18.542 -8.766 6.554 1 17.62 ? ND1 A1AS0 302 A 1 HETATM 8 C CD2 A1AS0 . . . C 3 -18.225 -6.587 6.811 1 17.22 ? CD2 A1AS0 302 A 1 HETATM 9 C CE1 A1AS0 . . . C 3 -18.853 -8.408 7.816 1 16.37 ? CE1 A1AS0 302 A 1 HETATM 10 N NE2 A1AS0 . . . C 3 -18.655 -7.073 7.97 1 19.78 ? NE2 A1AS0 302 A 1 HETATM 11 SE SE2 A1AS0 . . . C 3 -17.816 -4.747 6.529 1 21.95 ? SE2 A1AS0 302 A 1 HETATM 12 O OXT A1AS0 . . . C 3 -20.998 -7.124 4.26 1 19.05 -1 OXT A1AS0 302 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 12 #