data_9BXY
#
_model_server_result.job_id            CX8Lw_p5JBJx-ahhBG5cdQ 
_model_server_result.datetime_utc      '2025-07-07 22:32:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9bxy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":507}' 
#
_entry.id    9BXY 
#
_exptl.entry_id    9BXY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    9 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            9BXY 
_cell.length_a            66.467 
_cell.length_b            67.686 
_cell.length_c            87.389 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9BXY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 13 A CYS 54 1_555 A SG CYS 33 A CYS 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
disulf ? disulf2 A SG CYS 78 A CYS 119 1_555 A SG CYS 91 A CYS 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf3 A SG CYS 104 A CYS 218 1_555 A SG CYS 133 A CYS 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? 
disulf ? disulf4 A SG CYS 114 A CYS 228 1_555 A SG CYS 125 A CYS 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? 
disulf ? disulf5 A SG CYS 182 A CYS 296 1_555 A SG CYS 201 A CYS 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? 
disulf ? disulf6 A SG CYS 247 A CYS 378 1_555 A SG CYS 308 A CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
disulf ? disulf7 A SG CYS 254 A CYS 385 1_555 A SG CYS 281 A CYS 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf8 A SG CYS 264 A CYS 395 1_555 A SG CYS 273 A CYS 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? 
covale ? covale1 A ND2 ASN 120 A ASN 234 1_555 B C1 NAG . A NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.427 ? 
covale ? covale2 A ND2 ASN 127 A ASN 241 1_555 C C1 NAG . A NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? 
covale ? covale3 A ND2 ASN 148 A ASN 262 1_555 D C1 NAG . A NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? 
covale ? covale4 A ND2 ASN 162 A ASN 276 1_555 E C1 NAG . A NAG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? 
covale ? covale5 A ND2 ASN 175 A ASN 289 1_555 F C1 NAG . A NAG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? 
covale ? covale6 A ND2 ASN 181 A ASN 295 1_555 G C1 NAG . A NAG 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? 
covale ? covale7 A ND2 ASN 204 A ASN 334 1_555 H C1 NAG . A NAG 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.421 ? 
covale ? covale8 A ND2 ASN 255 A ASN 386 1_555 I C1 NAG . A NAG 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? 
covale ? covale9 A ND2 ASN 311 A ASN 448 1_555 J C1 NAG . A NAG 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 343 n n 
C1 O1 NAG sing 344 n n 
C1 O5 NAG sing 345 n n 
C1 H1 NAG sing 346 n n 
C2 C3 NAG sing 347 n n 
C2 N2 NAG sing 348 n n 
C2 H2 NAG sing 349 n n 
C3 C4 NAG sing 350 n n 
C3 O3 NAG sing 351 n n 
C3 H3 NAG sing 352 n n 
C4 C5 NAG sing 353 n n 
C4 O4 NAG sing 354 n n 
C4 H4 NAG sing 355 n n 
C5 C6 NAG sing 356 n n 
C5 O5 NAG sing 357 n n 
C5 H5 NAG sing 358 n n 
C6 O6 NAG sing 359 n n 
C6 H61 NAG sing 360 n n 
C6 H62 NAG sing 361 n n 
C7 C8 NAG sing 362 n n 
C7 N2 NAG sing 363 n n 
C7 O7 NAG doub 364 n n 
C8 H81 NAG sing 365 n n 
C8 H82 NAG sing 366 n n 
C8 H83 NAG sing 367 n n 
N2 HN2 NAG sing 368 n n 
O1 HO1 NAG sing 369 n n 
O3 HO3 NAG sing 370 n n 
O4 HO4 NAG sing 371 n n 
O6 HO6 NAG sing 372 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     9BXY 
_atom_sites.fract_transf_matrix[1][1]    0.015045 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014774 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011443 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NAG A 1 501 501 NAG NAG . 
C 2 NAG A 1 502 502 NAG NAG . 
D 2 NAG A 1 503 503 NAG NAG . 
E 2 NAG A 1 504 504 NAG NAG . 
F 2 NAG A 1 505 505 NAG NAG . 
G 2 NAG A 1 506 506 NAG NAG . 
H 2 NAG A 1 507 507 NAG NAG . 
I 2 NAG A 1 508 508 NAG NAG . 
J 2 NAG A 1 509 510 NAG NAG . 
K 3 EPE A 1 510 512 EPE EPE . 
L 4 A1ATE A 1 511 1 A1ATE MW5 . 
M 5 HOH A 1 601 17 HOH HOH . 
M 5 HOH A 2 602 21 HOH HOH . 
M 5 HOH A 3 603 43 HOH HOH . 
M 5 HOH A 4 604 75 HOH HOH . 
M 5 HOH A 5 605 41 HOH HOH . 
M 5 HOH A 6 606 15 HOH HOH . 
M 5 HOH A 7 607 53 HOH HOH . 
M 5 HOH A 8 608 6 HOH HOH . 
M 5 HOH A 9 609 29 HOH HOH . 
M 5 HOH A 10 610 7 HOH HOH . 
M 5 HOH A 11 611 10 HOH HOH . 
M 5 HOH A 12 612 32 HOH HOH . 
M 5 HOH A 13 613 8 HOH HOH . 
M 5 HOH A 14 614 50 HOH HOH . 
M 5 HOH A 15 615 5 HOH HOH . 
M 5 HOH A 16 616 25 HOH HOH . 
M 5 HOH A 17 617 19 HOH HOH . 
M 5 HOH A 18 618 73 HOH HOH . 
M 5 HOH A 19 619 46 HOH HOH . 
M 5 HOH A 20 620 37 HOH HOH . 
M 5 HOH A 21 621 55 HOH HOH . 
M 5 HOH A 22 622 38 HOH HOH . 
M 5 HOH A 23 623 70 HOH HOH . 
M 5 HOH A 24 624 12 HOH HOH . 
M 5 HOH A 25 625 1 HOH HOH . 
M 5 HOH A 26 626 11 HOH HOH . 
M 5 HOH A 27 627 9 HOH HOH . 
M 5 HOH A 28 628 26 HOH HOH . 
M 5 HOH A 29 629 24 HOH HOH . 
M 5 HOH A 30 630 16 HOH HOH . 
M 5 HOH A 31 631 13 HOH HOH . 
M 5 HOH A 32 632 28 HOH HOH . 
M 5 HOH A 33 633 33 HOH HOH . 
M 5 HOH A 34 634 47 HOH HOH . 
M 5 HOH A 35 635 30 HOH HOH . 
M 5 HOH A 36 636 31 HOH HOH . 
M 5 HOH A 37 637 14 HOH HOH . 
M 5 HOH A 38 638 2 HOH HOH . 
M 5 HOH A 39 639 27 HOH HOH . 
M 5 HOH A 40 640 54 HOH HOH . 
M 5 HOH A 41 641 52 HOH HOH . 
M 5 HOH A 42 642 64 HOH HOH . 
M 5 HOH A 43 643 71 HOH HOH . 
M 5 HOH A 44 644 4 HOH HOH . 
M 5 HOH A 45 645 39 HOH HOH . 
M 5 HOH A 46 646 76 HOH HOH . 
M 5 HOH A 47 647 3 HOH HOH . 
M 5 HOH A 48 648 23 HOH HOH . 
M 5 HOH A 49 649 34 HOH HOH . 
M 5 HOH A 50 650 51 HOH HOH . 
M 5 HOH A 51 651 40 HOH HOH . 
M 5 HOH A 52 652 62 HOH HOH . 
M 5 HOH A 53 653 35 HOH HOH . 
M 5 HOH A 54 654 48 HOH HOH . 
M 5 HOH A 55 655 72 HOH HOH . 
M 5 HOH A 56 656 18 HOH HOH . 
M 5 HOH A 57 657 36 HOH HOH . 
M 5 HOH A 58 658 74 HOH HOH . 
M 5 HOH A 59 659 58 HOH HOH . 
M 5 HOH A 60 660 56 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . H 2 -30.332 24.897 -27.318 1 69.13 ? C1 NAG 507 A 1 
HETATM 2 C C2 NAG . . . H 2 -30.838 24.865 -28.773 1 79.57 ? C2 NAG 507 A 1 
HETATM 3 C C3 NAG . . . H 2 -32.357 25.049 -28.836 1 76.89 ? C3 NAG 507 A 1 
HETATM 4 C C4 NAG . . . H 2 -33.051 24.072 -27.897 1 80.46 ? C4 NAG 507 A 1 
HETATM 5 C C5 NAG . . . H 2 -32.518 24.299 -26.494 1 77.49 ? C5 NAG 507 A 1 
HETATM 6 C C6 NAG . . . H 2 -33.165 23.421 -25.447 1 83.48 ? C6 NAG 507 A 1 
HETATM 7 C C7 NAG . . . H 2 -29.442 25.613 -30.652 1 77.52 ? C7 NAG 507 A 1 
HETATM 8 C C8 NAG . . . H 2 -28.803 26.787 -31.332 1 86.62 ? C8 NAG 507 A 1 
HETATM 9 N N2 NAG . . . H 2 -30.164 25.887 -29.562 1 77.4 ? N2 NAG 507 A 1 
HETATM 10 O O3 NAG . . . H 2 -32.8 24.844 -30.173 1 85.72 ? O3 NAG 507 A 1 
HETATM 11 O O4 NAG . . . H 2 -34.462 24.249 -27.905 1 88.95 ? O4 NAG 507 A 1 
HETATM 12 O O5 NAG . . . H 2 -31.118 24.004 -26.499 1 66.24 ? O5 NAG 507 A 1 
HETATM 13 O O6 NAG . . . H 2 -32.41 22.244 -25.19 1 81.87 ? O6 NAG 507 A 1 
HETATM 14 O O7 NAG . . . H 2 -29.32 24.472 -31.076 1 72.52 ? O7 NAG 507 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           273 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           14 
#