data_9BY4 # _model_server_result.job_id 8EOdkWCTR6jLjM0LsPZ1Aw _model_server_result.datetime_utc '2025-08-03 16:10:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9by4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1304}' # _entry.id 9BY4 # _exptl.entry_id 9BY4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 76.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,3-PROPANDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9BY4 _cell.length_a 145.968 _cell.length_b 145.968 _cell.length_c 145.968 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9BY4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 324 A ASP 1008 1_555 D CA CA . A CA 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.823 ? metalc ? metalc2 A OD2 ASP 324 A ASP 1008 1_555 D CA CA . A CA 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.772 ? # _chem_comp.formula 'C3 H8 O2' _chem_comp.formula_weight 76.094 _chem_comp.id PDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,3-PROPANDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PDO sing 237 n n C1 C2 PDO sing 238 n n C1 H11 PDO sing 239 n n C1 H12 PDO sing 240 n n O1 HO1 PDO sing 241 n n C2 C3 PDO sing 242 n n C2 H21 PDO sing 243 n n C2 H22 PDO sing 244 n n C3 O3 PDO sing 245 n n C3 H31 PDO sing 246 n n C3 H32 PDO sing 247 n n O3 HO3 PDO sing 248 n n # _atom_sites.entry_id 9BY4 _atom_sites.fract_transf_matrix[1][1] 0.006851 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006851 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006851 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PDO A 1 1301 1301 PDO PDO . C 3 Q6K A 1 1302 1401 Q6K YY4 . D 4 CA A 1 1303 1501 CA CA . E 2 PDO A 1 1304 1601 PDO PDO . F 2 PDO A 1 1305 1701 PDO PDO . G 5 HOH A 1 1401 70 HOH HOH . G 5 HOH A 2 1402 88 HOH HOH . G 5 HOH A 3 1403 58 HOH HOH . G 5 HOH A 4 1404 59 HOH HOH . G 5 HOH A 5 1405 69 HOH HOH . G 5 HOH A 6 1406 67 HOH HOH . G 5 HOH A 7 1407 62 HOH HOH . G 5 HOH A 8 1408 80 HOH HOH . G 5 HOH A 9 1409 85 HOH HOH . G 5 HOH A 10 1410 65 HOH HOH . G 5 HOH A 11 1411 56 HOH HOH . G 5 HOH A 12 1412 4 HOH HOH . G 5 HOH A 13 1413 75 HOH HOH . G 5 HOH A 14 1414 33 HOH HOH . G 5 HOH A 15 1415 10 HOH HOH . G 5 HOH A 16 1416 72 HOH HOH . G 5 HOH A 17 1417 5 HOH HOH . G 5 HOH A 18 1418 87 HOH HOH . G 5 HOH A 19 1419 78 HOH HOH . G 5 HOH A 20 1420 1 HOH HOH . G 5 HOH A 21 1421 79 HOH HOH . G 5 HOH A 22 1422 66 HOH HOH . G 5 HOH A 23 1423 64 HOH HOH . G 5 HOH A 24 1424 35 HOH HOH . G 5 HOH A 25 1425 86 HOH HOH . G 5 HOH A 26 1426 40 HOH HOH . G 5 HOH A 27 1427 84 HOH HOH . G 5 HOH A 28 1428 71 HOH HOH . G 5 HOH A 29 1429 68 HOH HOH . G 5 HOH A 30 1430 81 HOH HOH . G 5 HOH A 31 1431 6 HOH HOH . G 5 HOH A 32 1432 89 HOH HOH . G 5 HOH A 33 1433 19 HOH HOH . G 5 HOH A 34 1434 57 HOH HOH . G 5 HOH A 35 1435 76 HOH HOH . G 5 HOH A 36 1436 8 HOH HOH . G 5 HOH A 37 1437 41 HOH HOH . G 5 HOH A 38 1438 27 HOH HOH . G 5 HOH A 39 1439 13 HOH HOH . G 5 HOH A 40 1440 15 HOH HOH . G 5 HOH A 41 1441 74 HOH HOH . G 5 HOH A 42 1442 61 HOH HOH . G 5 HOH A 43 1443 46 HOH HOH . G 5 HOH A 44 1444 82 HOH HOH . G 5 HOH A 45 1445 7 HOH HOH . G 5 HOH A 46 1446 77 HOH HOH . G 5 HOH A 47 1447 38 HOH HOH . G 5 HOH A 48 1448 29 HOH HOH . G 5 HOH A 49 1449 17 HOH HOH . G 5 HOH A 50 1450 42 HOH HOH . G 5 HOH A 51 1451 83 HOH HOH . G 5 HOH A 52 1452 51 HOH HOH . G 5 HOH A 53 1453 34 HOH HOH . G 5 HOH A 54 1454 40 HOH HOH . G 5 HOH A 55 1455 55 HOH HOH . G 5 HOH A 56 1456 63 HOH HOH . G 5 HOH A 57 1457 4 HOH HOH . G 5 HOH A 58 1458 60 HOH HOH . G 5 HOH A 59 1459 32 HOH HOH . G 5 HOH A 60 1460 30 HOH HOH . G 5 HOH A 61 1461 31 HOH HOH . G 5 HOH A 62 1462 16 HOH HOH . G 5 HOH A 63 1463 73 HOH HOH . G 5 HOH A 64 1464 2 HOH HOH . G 5 HOH A 65 1465 45 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PDO . . . E 2 51.674 -4.882 23.291 1 116.81 ? C1 PDO 1304 A 1 HETATM 2 O O1 PDO . . . E 2 50.811 -3.912 22.767 1 116.04 ? O1 PDO 1304 A 1 HETATM 3 C C2 PDO . . . E 2 50.862 -6.114 23.676 1 118.12 ? C2 PDO 1304 A 1 HETATM 4 C C3 PDO . . . E 2 50.354 -5.952 25.106 1 118.08 ? C3 PDO 1304 A 1 HETATM 5 O O3 PDO . . . E 2 49.806 -7.168 25.537 1 118.03 ? O3 PDO 1304 A 1 # _model_server_stats.io_time_ms 81 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 5 #