data_9BY6 # _model_server_result.job_id 2vxZOKlfVD1guiYS59M0Wg _model_server_result.datetime_utc '2025-07-20 10:12:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9by6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1302}' # _entry.id 9BY6 # _exptl.entry_id 9BY6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 499.607 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(2-{[2-(dimethylamino)ethyl](methyl)amino}-4-methoxy-5-{[4-(1-methyl-1H-indol-3-yl)pyrimidin-2-yl]amino}phenyl)prop-2-enamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9BY6 _cell.length_a 145.916 _cell.length_b 145.916 _cell.length_c 145.916 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9BY6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C28 H33 N7 O2' _chem_comp.formula_weight 499.607 _chem_comp.id YY3 _chem_comp.mon_nstd_flag . _chem_comp.name N-(2-{[2-(dimethylamino)ethyl](methyl)amino}-4-methoxy-5-{[4-(1-methyl-1H-indol-3-yl)pyrimidin-2-yl]amino}phenyl)prop-2-enamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Osimertinib;AZD 9291' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C13 N2 YY3 sing 388 n n N2 C11 YY3 sing 389 n n N2 C12 YY3 sing 390 n n C10 C11 YY3 sing 391 n n C10 N1 YY3 sing 392 n n C28 N1 YY3 sing 393 n n N1 C2 YY3 sing 394 n n C14 O1 YY3 sing 395 n n C3 C2 YY3 doub 396 n y C3 C4 YY3 sing 397 n y C2 C1 YY3 sing 398 n y O1 C4 YY3 sing 399 n n C4 C5 YY3 doub 400 n y C1 N YY3 sing 401 n n C1 C6 YY3 doub 402 n y N C7 YY3 sing 403 n n C7 C8 YY3 sing 404 n n C7 O YY3 doub 405 n n C5 C6 YY3 sing 406 n y C5 N3 YY3 sing 407 n n C8 C9 YY3 doub 408 n n N3 C15 YY3 sing 409 n n C15 N5 YY3 doub 410 n y C15 N4 YY3 sing 411 n y C24 C25 YY3 doub 412 n y C24 C23 YY3 sing 413 n y N5 C18 YY3 sing 414 n y N4 C16 YY3 doub 415 n y C25 C26 YY3 sing 416 n y C23 C22 YY3 doub 417 n y C18 C19 YY3 sing 418 n n C18 C17 YY3 doub 419 n y C26 C19 YY3 sing 420 n y C26 C21 YY3 doub 421 n y C16 C17 YY3 sing 422 n y C19 C20 YY3 doub 423 n y C22 C21 YY3 sing 424 n y C21 N6 YY3 sing 425 n y C20 N6 YY3 sing 426 n y N6 C27 YY3 sing 427 n n C13 H1 YY3 sing 428 n n C13 H2 YY3 sing 429 n n C13 H3 YY3 sing 430 n n C12 H5 YY3 sing 431 n n C12 H6 YY3 sing 432 n n C12 H7 YY3 sing 433 n n C11 H8 YY3 sing 434 n n C11 H9 YY3 sing 435 n n C10 H10 YY3 sing 436 n n C10 H11 YY3 sing 437 n n C28 H12 YY3 sing 438 n n C28 H13 YY3 sing 439 n n C28 H14 YY3 sing 440 n n C3 H15 YY3 sing 441 n n C14 H16 YY3 sing 442 n n C14 H17 YY3 sing 443 n n C14 H18 YY3 sing 444 n n N H19 YY3 sing 445 n n C8 H20 YY3 sing 446 n n C9 H22 YY3 sing 447 n n C9 H23 YY3 sing 448 n n C6 H25 YY3 sing 449 n n N3 H26 YY3 sing 450 n n C16 H27 YY3 sing 451 n n C17 H28 YY3 sing 452 n n C25 H29 YY3 sing 453 n n C24 H30 YY3 sing 454 n n C23 H31 YY3 sing 455 n n C22 H32 YY3 sing 456 n n C27 H33 YY3 sing 457 n n C27 H34 YY3 sing 458 n n C27 H35 YY3 sing 459 n n C20 H36 YY3 sing 460 n n # _atom_sites.entry_id 9BY6 _atom_sites.fract_transf_matrix[1][1] 0.006853 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006853 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006853 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PDO A 1 1301 1301 PDO PDO . C 3 YY3 A 1 1302 1401 YY3 YY4 . D 4 HOH A 1 1401 1 HOH HOH . D 4 HOH A 2 1402 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 YY3 . . . C 3 -3.266 -49.882 12.604 1 128.57 ? C13 YY3 1302 A 1 HETATM 2 N N2 YY3 . . . C 3 -1.994 -49.528 11.998 1 128.72 ? N2 YY3 1302 A 1 HETATM 3 C C12 YY3 . . . C 3 -2.001 -49.91 10.597 1 130.73 ? C12 YY3 1302 A 1 HETATM 4 C C11 YY3 . . . C 3 -0.907 -50.205 12.683 1 127.98 ? C11 YY3 1302 A 1 HETATM 5 C C10 YY3 . . . C 3 -0.879 -49.765 14.144 1 124.38 ? C10 YY3 1302 A 1 HETATM 6 N N1 YY3 . . . C 3 0.485 -49.74 14.644 1 114.9 ? N1 YY3 1302 A 1 HETATM 7 C C28 YY3 . . . C 3 1.465 -48.885 13.999 1 112.02 ? C28 YY3 1302 A 1 HETATM 8 C C3 YY3 . . . C 3 1.946 -51.446 15.598 1 103.93 ? C3 YY3 1302 A 1 HETATM 9 C C4 YY3 . . . C 3 2.375 -52.247 16.643 1 95.49 ? C4 YY3 1302 A 1 HETATM 10 O O1 YY3 . . . C 3 3.438 -53.135 16.446 1 84.35 ? O1 YY3 1302 A 1 HETATM 11 C C14 YY3 . . . C 3 4.622 -52.524 16.019 1 77.52 ? C14 YY3 1302 A 1 HETATM 12 C C2 YY3 . . . C 3 0.895 -50.562 15.772 1 110.14 ? C2 YY3 1302 A 1 HETATM 13 C C1 YY3 . . . C 3 0.27 -50.478 17.012 1 106.6 ? C1 YY3 1302 A 1 HETATM 14 N N YY3 . . . C 3 -0.832 -49.555 17.238 1 104.28 ? N YY3 1302 A 1 HETATM 15 C C7 YY3 . . . C 3 -2.144 -50.009 17.669 1 103.85 ? C7 YY3 1302 A 1 HETATM 16 O O YY3 . . . C 3 -2.353 -51.16 17.855 1 101.74 ? O YY3 1302 A 1 HETATM 17 C C8 YY3 . . . C 3 -3.266 -48.995 17.888 1 104.48 ? C8 YY3 1302 A 1 HETATM 18 C C9 YY3 . . . C 3 -3.69 -49.005 19.355 1 106.26 ? C9 YY3 1302 A 1 HETATM 19 C C6 YY3 . . . C 3 0.707 -51.283 18.053 1 100.97 ? C6 YY3 1302 A 1 HETATM 20 C C5 YY3 . . . C 3 1.761 -52.169 17.882 1 96.47 ? C5 YY3 1302 A 1 HETATM 21 N N3 YY3 . . . C 3 2.247 -53.036 18.951 1 90.38 ? N3 YY3 1302 A 1 HETATM 22 C C15 YY3 . . . C 3 1.843 -52.991 20.351 1 90.21 ? C15 YY3 1302 A 1 HETATM 23 N N5 YY3 . . . C 3 1.121 -51.967 20.86 1 95.96 ? N5 YY3 1302 A 1 HETATM 24 N N4 YY3 . . . C 3 2.213 -54.002 21.17 1 85.61 ? N4 YY3 1302 A 1 HETATM 25 C C16 YY3 . . . C 3 1.865 -53.99 22.445 1 87.57 ? C16 YY3 1302 A 1 HETATM 26 C C17 YY3 . . . C 3 1.139 -52.962 22.944 1 92.28 ? C17 YY3 1302 A 1 HETATM 27 C C18 YY3 . . . C 3 0.764 -51.945 22.131 1 100.37 ? C18 YY3 1302 A 1 HETATM 28 C C19 YY3 . . . C 3 0.017 -50.89 22.642 1 107.96 ? C19 YY3 1302 A 1 HETATM 29 C C26 YY3 . . . C 3 -0.209 -49.704 21.978 1 106.21 ? C26 YY3 1302 A 1 HETATM 30 C C25 YY3 . . . C 3 0.13 -49.117 20.777 1 100.87 ? C25 YY3 1302 A 1 HETATM 31 C C24 YY3 . . . C 3 -0.32 -47.836 20.481 1 96.36 ? C24 YY3 1302 A 1 HETATM 32 C C23 YY3 . . . C 3 -1.113 -47.134 21.391 1 100.46 ? C23 YY3 1302 A 1 HETATM 33 C C22 YY3 . . . C 3 -1.467 -47.705 22.612 1 103.8 ? C22 YY3 1302 A 1 HETATM 34 C C21 YY3 . . . C 3 -1.028 -48.978 22.922 1 107.68 ? C21 YY3 1302 A 1 HETATM 35 N N6 YY3 . . . C 3 -1.161 -49.838 23.974 1 108.41 ? N6 YY3 1302 A 1 HETATM 36 C C27 YY3 . . . C 3 -1.922 -49.51 25.165 1 105.47 ? C27 YY3 1302 A 1 HETATM 37 C C20 YY3 . . . C 3 -0.557 -50.959 23.82 1 111.06 ? C20 YY3 1302 A 1 # _model_server_stats.io_time_ms 84 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 37 #