data_9BYJ # _model_server_result.job_id sqsLjtyl42holhIpz37UjA _model_server_result.datetime_utc '2024-12-01 10:54:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9byj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Y","auth_seq_id":624}' # _entry.id 9BYJ # _exptl.entry_id 9BYJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9BYJ _cell.length_a 43.346 _cell.length_b 85.025 _cell.length_c 128.798 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9BYJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 H N N ? 3 I N N ? 3 O N N ? 3 X N N ? 3 Y N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLN 449 A GLN 526 1_555 A N PTR 450 A PTR 527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C PTR 450 A PTR 527 1_555 A N GLU 451 A GLU 528 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 92 n n C1 C2 EDO sing 93 n n C1 H11 EDO sing 94 n n C1 H12 EDO sing 95 n n O1 HO1 EDO sing 96 n n C2 O2 EDO sing 97 n n C2 H21 EDO sing 98 n n C2 H22 EDO sing 99 n n O2 HO2 EDO sing 100 n n # _atom_sites.entry_id 9BYJ _atom_sites.fract_transf_matrix[1][1] 0.02307 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011761 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007764 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 VSE A 1 601 601 VSE VSE . C 3 EDO A 1 602 603 EDO EDO . D 4 DMS A 1 603 604 DMS DMS . E 5 SCN A 1 604 605 SCN SCN . F 5 SCN A 1 605 606 SCN SCN . G 5 SCN A 1 606 613 SCN SCN . H 3 EDO A 1 607 614 EDO EDO . I 3 EDO A 1 608 615 EDO EDO . J 5 SCN A 1 609 616 SCN SCN . K 5 SCN A 1 610 617 SCN SCN . L 5 SCN A 1 611 618 SCN SCN . M 5 SCN A 1 612 619 SCN SCN . N 5 SCN A 1 613 620 SCN SCN . O 3 EDO A 1 614 621 EDO EDO . P 5 SCN A 1 615 622 SCN SCN . Q 5 SCN A 1 616 623 SCN SCN . R 5 SCN A 1 617 624 SCN SCN . S 5 SCN A 1 618 625 SCN SCN . T 5 SCN A 1 619 626 SCN SCN . U 5 SCN A 1 620 627 SCN SCN . V 5 SCN A 1 621 629 SCN SCN . W 4 DMS A 1 622 630 DMS DMS . X 3 EDO A 1 623 631 EDO EDO . Y 3 EDO A 1 624 632 EDO EDO . Z 6 HOH A 1 701 146 HOH HOH . Z 6 HOH A 2 702 148 HOH HOH . Z 6 HOH A 3 703 144 HOH HOH . Z 6 HOH A 4 704 111 HOH HOH . Z 6 HOH A 5 705 84 HOH HOH . Z 6 HOH A 6 706 94 HOH HOH . Z 6 HOH A 7 707 29 HOH HOH . Z 6 HOH A 8 708 41 HOH HOH . Z 6 HOH A 9 709 129 HOH HOH . Z 6 HOH A 10 710 75 HOH HOH . Z 6 HOH A 11 711 85 HOH HOH . Z 6 HOH A 12 712 73 HOH HOH . Z 6 HOH A 13 713 142 HOH HOH . Z 6 HOH A 14 714 70 HOH HOH . Z 6 HOH A 15 715 177 HOH HOH . Z 6 HOH A 16 716 128 HOH HOH . Z 6 HOH A 17 717 25 HOH HOH . Z 6 HOH A 18 718 9 HOH HOH . Z 6 HOH A 19 719 139 HOH HOH . Z 6 HOH A 20 720 34 HOH HOH . Z 6 HOH A 21 721 155 HOH HOH . Z 6 HOH A 22 722 46 HOH HOH . Z 6 HOH A 23 723 22 HOH HOH . Z 6 HOH A 24 724 45 HOH HOH . Z 6 HOH A 25 725 95 HOH HOH . Z 6 HOH A 26 726 52 HOH HOH . Z 6 HOH A 27 727 103 HOH HOH . Z 6 HOH A 28 728 37 HOH HOH . Z 6 HOH A 29 729 192 HOH HOH . Z 6 HOH A 30 730 48 HOH HOH . Z 6 HOH A 31 731 76 HOH HOH . Z 6 HOH A 32 732 151 HOH HOH . Z 6 HOH A 33 733 186 HOH HOH . Z 6 HOH A 34 734 162 HOH HOH . Z 6 HOH A 35 735 10 HOH HOH . Z 6 HOH A 36 736 100 HOH HOH . Z 6 HOH A 37 737 86 HOH HOH . Z 6 HOH A 38 738 106 HOH HOH . Z 6 HOH A 39 739 59 HOH HOH . Z 6 HOH A 40 740 33 HOH HOH . Z 6 HOH A 41 741 31 HOH HOH . Z 6 HOH A 42 742 99 HOH HOH . Z 6 HOH A 43 743 120 HOH HOH . Z 6 HOH A 44 744 11 HOH HOH . Z 6 HOH A 45 745 36 HOH HOH . Z 6 HOH A 46 746 17 HOH HOH . Z 6 HOH A 47 747 107 HOH HOH . Z 6 HOH A 48 748 58 HOH HOH . Z 6 HOH A 49 749 82 HOH HOH . Z 6 HOH A 50 750 15 HOH HOH . Z 6 HOH A 51 751 64 HOH HOH . Z 6 HOH A 52 752 32 HOH HOH . Z 6 HOH A 53 753 98 HOH HOH . Z 6 HOH A 54 754 137 HOH HOH . Z 6 HOH A 55 755 117 HOH HOH . Z 6 HOH A 56 756 71 HOH HOH . Z 6 HOH A 57 757 205 HOH HOH . Z 6 HOH A 58 758 50 HOH HOH . Z 6 HOH A 59 759 79 HOH HOH . Z 6 HOH A 60 760 207 HOH HOH . Z 6 HOH A 61 761 87 HOH HOH . Z 6 HOH A 62 762 21 HOH HOH . Z 6 HOH A 63 763 6 HOH HOH . Z 6 HOH A 64 764 158 HOH HOH . Z 6 HOH A 65 765 7 HOH HOH . Z 6 HOH A 66 766 5 HOH HOH . Z 6 HOH A 67 767 131 HOH HOH . Z 6 HOH A 68 768 135 HOH HOH . Z 6 HOH A 69 769 83 HOH HOH . Z 6 HOH A 70 770 140 HOH HOH . Z 6 HOH A 71 771 23 HOH HOH . Z 6 HOH A 72 772 16 HOH HOH . Z 6 HOH A 73 773 105 HOH HOH . Z 6 HOH A 74 774 4 HOH HOH . Z 6 HOH A 75 775 157 HOH HOH . Z 6 HOH A 76 776 12 HOH HOH . Z 6 HOH A 77 777 213 HOH HOH . Z 6 HOH A 78 778 18 HOH HOH . Z 6 HOH A 79 779 40 HOH HOH . Z 6 HOH A 80 780 92 HOH HOH . Z 6 HOH A 81 781 44 HOH HOH . Z 6 HOH A 82 782 30 HOH HOH . Z 6 HOH A 83 783 14 HOH HOH . Z 6 HOH A 84 784 72 HOH HOH . Z 6 HOH A 85 785 42 HOH HOH . Z 6 HOH A 86 786 145 HOH HOH . Z 6 HOH A 87 787 179 HOH HOH . Z 6 HOH A 88 788 49 HOH HOH . Z 6 HOH A 89 789 61 HOH HOH . Z 6 HOH A 90 790 2 HOH HOH . Z 6 HOH A 91 791 115 HOH HOH . Z 6 HOH A 92 792 118 HOH HOH . Z 6 HOH A 93 793 190 HOH HOH . Z 6 HOH A 94 794 181 HOH HOH . Z 6 HOH A 95 795 168 HOH HOH . Z 6 HOH A 96 796 197 HOH HOH . Z 6 HOH A 97 797 13 HOH HOH . Z 6 HOH A 98 798 119 HOH HOH . Z 6 HOH A 99 799 109 HOH HOH . Z 6 HOH A 100 800 53 HOH HOH . Z 6 HOH A 101 801 35 HOH HOH . Z 6 HOH A 102 802 63 HOH HOH . Z 6 HOH A 103 803 90 HOH HOH . Z 6 HOH A 104 804 68 HOH HOH . Z 6 HOH A 105 805 39 HOH HOH . Z 6 HOH A 106 806 166 HOH HOH . Z 6 HOH A 107 807 167 HOH HOH . Z 6 HOH A 108 808 69 HOH HOH . Z 6 HOH A 109 809 152 HOH HOH . Z 6 HOH A 110 810 91 HOH HOH . Z 6 HOH A 111 811 116 HOH HOH . Z 6 HOH A 112 812 104 HOH HOH . Z 6 HOH A 113 813 1 HOH HOH . Z 6 HOH A 114 814 28 HOH HOH . Z 6 HOH A 115 815 110 HOH HOH . Z 6 HOH A 116 816 133 HOH HOH . Z 6 HOH A 117 817 62 HOH HOH . Z 6 HOH A 118 818 93 HOH HOH . Z 6 HOH A 119 819 20 HOH HOH . Z 6 HOH A 120 820 43 HOH HOH . Z 6 HOH A 121 821 169 HOH HOH . Z 6 HOH A 122 822 210 HOH HOH . Z 6 HOH A 123 823 54 HOH HOH . Z 6 HOH A 124 824 47 HOH HOH . Z 6 HOH A 125 825 74 HOH HOH . Z 6 HOH A 126 826 24 HOH HOH . Z 6 HOH A 127 827 125 HOH HOH . Z 6 HOH A 128 828 130 HOH HOH . Z 6 HOH A 129 829 8 HOH HOH . Z 6 HOH A 130 830 183 HOH HOH . Z 6 HOH A 131 831 27 HOH HOH . Z 6 HOH A 132 832 127 HOH HOH . Z 6 HOH A 133 833 185 HOH HOH . Z 6 HOH A 134 834 80 HOH HOH . Z 6 HOH A 135 835 161 HOH HOH . Z 6 HOH A 136 836 67 HOH HOH . Z 6 HOH A 137 837 3 HOH HOH . Z 6 HOH A 138 838 124 HOH HOH . Z 6 HOH A 139 839 147 HOH HOH . Z 6 HOH A 140 840 51 HOH HOH . Z 6 HOH A 141 841 65 HOH HOH . Z 6 HOH A 142 842 77 HOH HOH . Z 6 HOH A 143 843 149 HOH HOH . Z 6 HOH A 144 844 56 HOH HOH . Z 6 HOH A 145 845 60 HOH HOH . Z 6 HOH A 146 846 113 HOH HOH . Z 6 HOH A 147 847 81 HOH HOH . Z 6 HOH A 148 848 184 HOH HOH . Z 6 HOH A 149 849 88 HOH HOH . Z 6 HOH A 150 850 96 HOH HOH . Z 6 HOH A 151 851 26 HOH HOH . Z 6 HOH A 152 852 78 HOH HOH . Z 6 HOH A 153 853 112 HOH HOH . Z 6 HOH A 154 854 178 HOH HOH . Z 6 HOH A 155 855 220 HOH HOH . Z 6 HOH A 156 856 217 HOH HOH . Z 6 HOH A 157 857 193 HOH HOH . Z 6 HOH A 158 858 228 HOH HOH . Z 6 HOH A 159 859 265 HOH HOH . Z 6 HOH A 160 860 202 HOH HOH . Z 6 HOH A 161 861 165 HOH HOH . Z 6 HOH A 162 862 264 HOH HOH . Z 6 HOH A 163 863 66 HOH HOH . Z 6 HOH A 164 864 272 HOH HOH . Z 6 HOH A 165 865 19 HOH HOH . Z 6 HOH A 166 866 156 HOH HOH . Z 6 HOH A 167 867 273 HOH HOH . Z 6 HOH A 168 868 216 HOH HOH . Z 6 HOH A 169 869 211 HOH HOH . Z 6 HOH A 170 870 122 HOH HOH . Z 6 HOH A 171 871 132 HOH HOH . Z 6 HOH A 172 872 191 HOH HOH . Z 6 HOH A 173 873 163 HOH HOH . Z 6 HOH A 174 874 196 HOH HOH . Z 6 HOH A 175 875 254 HOH HOH . Z 6 HOH A 176 876 243 HOH HOH . Z 6 HOH A 177 877 154 HOH HOH . Z 6 HOH A 178 878 195 HOH HOH . Z 6 HOH A 179 879 214 HOH HOH . Z 6 HOH A 180 880 199 HOH HOH . Z 6 HOH A 181 881 172 HOH HOH . Z 6 HOH A 182 882 143 HOH HOH . Z 6 HOH A 183 883 206 HOH HOH . Z 6 HOH A 184 884 174 HOH HOH . Z 6 HOH A 185 885 222 HOH HOH . Z 6 HOH A 186 886 215 HOH HOH . Z 6 HOH A 187 887 226 HOH HOH . Z 6 HOH A 188 888 241 HOH HOH . Z 6 HOH A 189 889 201 HOH HOH . Z 6 HOH A 190 890 126 HOH HOH . Z 6 HOH A 191 891 134 HOH HOH . Z 6 HOH A 192 892 108 HOH HOH . Z 6 HOH A 193 893 180 HOH HOH . Z 6 HOH A 194 894 209 HOH HOH . Z 6 HOH A 195 895 123 HOH HOH . Z 6 HOH A 196 896 221 HOH HOH . Z 6 HOH A 197 897 170 HOH HOH . Z 6 HOH A 198 898 160 HOH HOH . Z 6 HOH A 199 899 248 HOH HOH . Z 6 HOH A 200 900 173 HOH HOH . Z 6 HOH A 201 901 204 HOH HOH . Z 6 HOH A 202 902 224 HOH HOH . Z 6 HOH A 203 903 121 HOH HOH . Z 6 HOH A 204 904 198 HOH HOH . Z 6 HOH A 205 905 227 HOH HOH . Z 6 HOH A 206 906 38 HOH HOH . Z 6 HOH A 207 907 55 HOH HOH . Z 6 HOH A 208 908 101 HOH HOH . Z 6 HOH A 209 909 188 HOH HOH . Z 6 HOH A 210 910 141 HOH HOH . Z 6 HOH A 211 911 89 HOH HOH . Z 6 HOH A 212 912 57 HOH HOH . Z 6 HOH A 213 913 189 HOH HOH . Z 6 HOH A 214 914 194 HOH HOH . Z 6 HOH A 215 915 102 HOH HOH . Z 6 HOH A 216 916 225 HOH HOH . Z 6 HOH A 217 917 271 HOH HOH . Z 6 HOH A 218 918 114 HOH HOH . Z 6 HOH A 219 919 136 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . Y 3 -17.521 -0.633 -5.23 1 58.53 ? C1 EDO 624 A 1 HETATM 2 O O1 EDO . . . Y 3 -18.058 -1.928 -4.937 1 59.67 ? O1 EDO 624 A 1 HETATM 3 C C2 EDO . . . Y 3 -18.115 -0.133 -6.541 1 66.39 ? C2 EDO 624 A 1 HETATM 4 O O2 EDO . . . Y 3 -18.041 -1.185 -7.509 1 73.07 ? O2 EDO 624 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 4 #