data_9BZR
#
_model_server_result.job_id            h-UzxTTQ9Ur23RSZ1DmyFA 
_model_server_result.datetime_utc      '2024-11-05 15:27:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          9bzr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":403}' 
#
_entry.id    9BZR 
#
_exptl.entry_id    9BZR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              104.061 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MALONIC ACID' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          116.96 
_cell.angle_gamma         90 
_cell.entry_id            9BZR 
_cell.length_a            75.255 
_cell.length_b            41.914 
_cell.length_c            78.053 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 9BZR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    'C 2y' 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 D N N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            OG 
_struct_conn.ptnr1_label_comp_id            SER 
_struct_conn.ptnr1_label_seq_id             47 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             SER 
_struct_conn.ptnr1_auth_seq_id              80 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            C 
_struct_conn.ptnr2_label_atom_id            C7 
_struct_conn.ptnr2_label_comp_id            TEM 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             TEM 
_struct_conn.ptnr2_auth_seq_id              402 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.371 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C3 H4 O4' 
_chem_comp.formula_weight    104.061 
_chem_comp.id                MLA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MALONIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'DICARBOXYLIC ACID C3;PROPANEDIOLIC ACID;METHANEDICARBOXYLIC ACID' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1A MLA sing 237 n n 
C1 O1B MLA doub 238 n n 
C1 C2 MLA sing 239 n n 
O1A H1A MLA sing 240 n n 
C2 C3 MLA sing 241 n n 
C2 HC21 MLA sing 242 n n 
C2 HC22 MLA sing 243 n n 
C3 O3A MLA doub 244 n n 
C3 O3B MLA sing 245 n n 
O3B H3B MLA sing 246 n n 
#
_atom_sites.entry_id                     9BZR 
_atom_sites.fract_transf_matrix[1][1]    0.013288 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.006759 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.023858 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014374 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MLA A 1 401 402 MLA MLI . 
C 3 TEM A 1 402 403 TEM TEM . 
D 2 MLA A 1 403 404 MLA MLI . 
E 4 CL A 1 404 1 CL CL . 
F 5 HOH A 1 501 120 HOH HOH . 
F 5 HOH A 2 502 48 HOH HOH . 
F 5 HOH A 3 503 108 HOH HOH . 
F 5 HOH A 4 504 119 HOH HOH . 
F 5 HOH A 5 505 45 HOH HOH . 
F 5 HOH A 6 506 35 HOH HOH . 
F 5 HOH A 7 507 92 HOH HOH . 
F 5 HOH A 8 508 63 HOH HOH . 
F 5 HOH A 9 509 91 HOH HOH . 
F 5 HOH A 10 510 118 HOH HOH . 
F 5 HOH A 11 511 95 HOH HOH . 
F 5 HOH A 12 512 69 HOH HOH . 
F 5 HOH A 13 513 32 HOH HOH . 
F 5 HOH A 14 514 110 HOH HOH . 
F 5 HOH A 15 515 3 HOH HOH . 
F 5 HOH A 16 516 29 HOH HOH . 
F 5 HOH A 17 517 11 HOH HOH . 
F 5 HOH A 18 518 42 HOH HOH . 
F 5 HOH A 19 519 8 HOH HOH . 
F 5 HOH A 20 520 106 HOH HOH . 
F 5 HOH A 21 521 79 HOH HOH . 
F 5 HOH A 22 522 1 HOH HOH . 
F 5 HOH A 23 523 25 HOH HOH . 
F 5 HOH A 24 524 80 HOH HOH . 
F 5 HOH A 25 525 18 HOH HOH . 
F 5 HOH A 26 526 30 HOH HOH . 
F 5 HOH A 27 527 34 HOH HOH . 
F 5 HOH A 28 528 56 HOH HOH . 
F 5 HOH A 29 529 87 HOH HOH . 
F 5 HOH A 30 530 15 HOH HOH . 
F 5 HOH A 31 531 53 HOH HOH . 
F 5 HOH A 32 532 28 HOH HOH . 
F 5 HOH A 33 533 99 HOH HOH . 
F 5 HOH A 34 534 4 HOH HOH . 
F 5 HOH A 35 535 116 HOH HOH . 
F 5 HOH A 36 536 50 HOH HOH . 
F 5 HOH A 37 537 7 HOH HOH . 
F 5 HOH A 38 538 5 HOH HOH . 
F 5 HOH A 39 539 74 HOH HOH . 
F 5 HOH A 40 540 51 HOH HOH . 
F 5 HOH A 41 541 98 HOH HOH . 
F 5 HOH A 42 542 44 HOH HOH . 
F 5 HOH A 43 543 38 HOH HOH . 
F 5 HOH A 44 544 37 HOH HOH . 
F 5 HOH A 45 545 68 HOH HOH . 
F 5 HOH A 46 546 59 HOH HOH . 
F 5 HOH A 47 547 105 HOH HOH . 
F 5 HOH A 48 548 103 HOH HOH . 
F 5 HOH A 49 549 23 HOH HOH . 
F 5 HOH A 50 550 109 HOH HOH . 
F 5 HOH A 51 551 21 HOH HOH . 
F 5 HOH A 52 552 71 HOH HOH . 
F 5 HOH A 53 553 54 HOH HOH . 
F 5 HOH A 54 554 2 HOH HOH . 
F 5 HOH A 55 555 16 HOH HOH . 
F 5 HOH A 56 556 33 HOH HOH . 
F 5 HOH A 57 557 26 HOH HOH . 
F 5 HOH A 58 558 97 HOH HOH . 
F 5 HOH A 59 559 65 HOH HOH . 
F 5 HOH A 60 560 41 HOH HOH . 
F 5 HOH A 61 561 81 HOH HOH . 
F 5 HOH A 62 562 17 HOH HOH . 
F 5 HOH A 63 563 22 HOH HOH . 
F 5 HOH A 64 564 43 HOH HOH . 
F 5 HOH A 65 565 94 HOH HOH . 
F 5 HOH A 66 566 57 HOH HOH . 
F 5 HOH A 67 567 67 HOH HOH . 
F 5 HOH A 68 568 73 HOH HOH . 
F 5 HOH A 69 569 55 HOH HOH . 
F 5 HOH A 70 570 40 HOH HOH . 
F 5 HOH A 71 571 100 HOH HOH . 
F 5 HOH A 72 572 85 HOH HOH . 
F 5 HOH A 73 573 19 HOH HOH . 
F 5 HOH A 74 574 47 HOH HOH . 
F 5 HOH A 75 575 77 HOH HOH . 
F 5 HOH A 76 576 31 HOH HOH . 
F 5 HOH A 77 577 12 HOH HOH . 
F 5 HOH A 78 578 52 HOH HOH . 
F 5 HOH A 79 579 20 HOH HOH . 
F 5 HOH A 80 580 24 HOH HOH . 
F 5 HOH A 81 581 46 HOH HOH . 
F 5 HOH A 82 582 60 HOH HOH . 
F 5 HOH A 83 583 93 HOH HOH . 
F 5 HOH A 84 584 61 HOH HOH . 
F 5 HOH A 85 585 88 HOH HOH . 
F 5 HOH A 86 586 70 HOH HOH . 
F 5 HOH A 87 587 36 HOH HOH . 
F 5 HOH A 88 588 62 HOH HOH . 
F 5 HOH A 89 589 72 HOH HOH . 
F 5 HOH A 90 590 76 HOH HOH . 
F 5 HOH A 91 591 89 HOH HOH . 
F 5 HOH A 92 592 6 HOH HOH . 
F 5 HOH A 93 593 10 HOH HOH . 
F 5 HOH A 94 594 107 HOH HOH . 
F 5 HOH A 95 595 27 HOH HOH . 
F 5 HOH A 96 596 90 HOH HOH . 
F 5 HOH A 97 597 78 HOH HOH . 
F 5 HOH A 98 598 96 HOH HOH . 
F 5 HOH A 99 599 84 HOH HOH . 
F 5 HOH A 100 600 14 HOH HOH . 
F 5 HOH A 101 602 104 HOH HOH . 
F 5 HOH A 102 603 13 HOH HOH . 
F 5 HOH A 103 604 86 HOH HOH . 
F 5 HOH A 104 605 49 HOH HOH . 
F 5 HOH A 105 606 117 HOH HOH . 
F 5 HOH A 106 607 82 HOH HOH . 
F 5 HOH A 107 608 112 HOH HOH . 
F 5 HOH A 108 609 115 HOH HOH . 
F 5 HOH A 109 610 114 HOH HOH . 
F 5 HOH A 110 611 58 HOH HOH . 
F 5 HOH A 111 612 39 HOH HOH . 
F 5 HOH A 112 613 111 HOH HOH . 
F 5 HOH A 113 614 113 HOH HOH . 
F 5 HOH A 114 615 83 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MLA . . . D 2 35.585 -15.607 10.85 1 50.74 ? C1 MLA 403 A 1 
HETATM 2 O O1A MLA . . . D 2 36.724 -15.084 10.849 1 52.32 ? O1A MLA 403 A 1 
HETATM 3 O O1B MLA . . . D 2 35.049 -16.204 9.887 1 47.8 ? O1B MLA 403 A 1 
HETATM 4 C C2 MLA . . . D 2 34.763 -15.513 12.137 1 51.61 ? C2 MLA 403 A 1 
HETATM 5 C C3 MLA . . . D 2 33.708 -16.632 12.28 1 54.51 ? C3 MLA 403 A 1 
HETATM 6 O O3A MLA . . . D 2 32.523 -16.296 12.087 1 54.79 ? O3A MLA 403 A 1 
HETATM 7 O O3B MLA . . . D 2 34.108 -17.775 12.58 1 55.56 ? O3B MLA 403 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           281 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           7 
#