data_9C0W # _model_server_result.job_id VD3ibvoe-OLW4-DcMtNjJw _model_server_result.datetime_utc '2025-02-24 14:33:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9c0w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 9C0W # _exptl.entry_id 9C0W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 329.458 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MALACHITE GREEN' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9C0W _cell.length_a 47.133 _cell.length_b 74.164 _cell.length_c 135.543 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9C0W _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C23 H25 N2 1' _chem_comp.formula_weight 329.458 _chem_comp.id MGR _chem_comp.mon_nstd_flag . _chem_comp.name 'MALACHITE GREEN' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MGR sing 278 n n C1 C8 MGR sing 279 n n C1 C14 MGR doub 280 n n C2 C3 MGR doub 281 n y C2 C7 MGR sing 282 n y C3 C4 MGR sing 283 n y C3 H31 MGR sing 284 n n C4 C5 MGR doub 285 n y C4 H41 MGR sing 286 n n C5 C6 MGR sing 287 n y C5 H51 MGR sing 288 n n C6 C7 MGR doub 289 n y C6 H61 MGR sing 290 n n C7 H71 MGR sing 291 n n C8 C9 MGR doub 292 n y C8 C13 MGR sing 293 n y C9 C10 MGR sing 294 n y C9 H91 MGR sing 295 n n C10 C11 MGR doub 296 n y C10 H101 MGR sing 297 n n C11 C12 MGR sing 298 n y C11 N2 MGR sing 299 n n C12 C13 MGR doub 300 n y C12 H121 MGR sing 301 n n C13 H131 MGR sing 302 n n C14 C15 MGR sing 303 n n C14 C19 MGR sing 304 n n C15 C16 MGR doub 305 n n C15 H151 MGR sing 306 n n C16 C17 MGR sing 307 n n C16 H161 MGR sing 308 n n C17 C18 MGR sing 309 n n C17 N3 MGR doub 310 n n C18 C19 MGR doub 311 n n C18 H181 MGR sing 312 n n C19 H191 MGR sing 313 n n C22 N2 MGR sing 314 n n C22 H221 MGR sing 315 n n C22 H222 MGR sing 316 n n C22 H223 MGR sing 317 n n C23 N2 MGR sing 318 n n C23 H231 MGR sing 319 n n C23 H232 MGR sing 320 n n C23 H233 MGR sing 321 n n C24 N3 MGR sing 322 n n C24 H241 MGR sing 323 n n C24 H242 MGR sing 324 n n C24 H243 MGR sing 325 n n C25 N3 MGR sing 326 n n C25 H251 MGR sing 327 n n C25 H252 MGR sing 328 n n C25 H253 MGR sing 329 n n # _atom_sites.entry_id 9C0W _atom_sites.fract_transf_matrix[1][1] 0.021217 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013484 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007378 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FMN A 1 301 1 FMN FMN . D 3 MGR B 1 301 2 MGR MGR . E 2 FMN B 1 302 3 FMN FMN . F 4 HOH A 1 401 106 HOH HOH . F 4 HOH A 2 402 125 HOH HOH . F 4 HOH A 3 403 23 HOH HOH . F 4 HOH A 4 404 2 HOH HOH . F 4 HOH A 5 405 70 HOH HOH . F 4 HOH A 6 406 71 HOH HOH . F 4 HOH A 7 407 37 HOH HOH . F 4 HOH A 8 408 10 HOH HOH . F 4 HOH A 9 409 112 HOH HOH . F 4 HOH A 10 410 4 HOH HOH . F 4 HOH A 11 411 41 HOH HOH . F 4 HOH A 12 412 5 HOH HOH . F 4 HOH A 13 413 79 HOH HOH . F 4 HOH A 14 414 88 HOH HOH . F 4 HOH A 15 415 14 HOH HOH . F 4 HOH A 16 416 84 HOH HOH . F 4 HOH A 17 417 17 HOH HOH . F 4 HOH A 18 418 27 HOH HOH . F 4 HOH A 19 419 19 HOH HOH . F 4 HOH A 20 420 76 HOH HOH . F 4 HOH A 21 421 42 HOH HOH . F 4 HOH A 22 422 16 HOH HOH . F 4 HOH A 23 423 119 HOH HOH . F 4 HOH A 24 424 25 HOH HOH . F 4 HOH A 25 425 55 HOH HOH . F 4 HOH A 26 426 20 HOH HOH . F 4 HOH A 27 427 49 HOH HOH . F 4 HOH A 28 428 33 HOH HOH . F 4 HOH A 29 429 40 HOH HOH . F 4 HOH A 30 430 18 HOH HOH . F 4 HOH A 31 431 28 HOH HOH . F 4 HOH A 32 432 1 HOH HOH . F 4 HOH A 33 433 102 HOH HOH . F 4 HOH A 34 434 78 HOH HOH . F 4 HOH A 35 435 45 HOH HOH . F 4 HOH A 36 436 69 HOH HOH . F 4 HOH A 37 437 26 HOH HOH . F 4 HOH A 38 438 73 HOH HOH . F 4 HOH A 39 439 91 HOH HOH . F 4 HOH A 40 440 89 HOH HOH . F 4 HOH A 41 441 21 HOH HOH . F 4 HOH A 42 442 48 HOH HOH . F 4 HOH A 43 443 153 HOH HOH . F 4 HOH A 44 444 163 HOH HOH . F 4 HOH A 45 445 62 HOH HOH . F 4 HOH A 46 446 22 HOH HOH . F 4 HOH A 47 447 39 HOH HOH . F 4 HOH A 48 448 35 HOH HOH . F 4 HOH A 49 449 38 HOH HOH . F 4 HOH A 50 450 7 HOH HOH . F 4 HOH A 51 451 118 HOH HOH . F 4 HOH A 52 452 36 HOH HOH . F 4 HOH A 53 453 66 HOH HOH . F 4 HOH A 54 454 97 HOH HOH . F 4 HOH A 55 455 30 HOH HOH . F 4 HOH A 56 456 34 HOH HOH . F 4 HOH A 57 457 63 HOH HOH . F 4 HOH A 58 458 90 HOH HOH . F 4 HOH A 59 459 152 HOH HOH . F 4 HOH A 60 460 103 HOH HOH . F 4 HOH A 61 461 120 HOH HOH . F 4 HOH A 62 462 161 HOH HOH . F 4 HOH A 63 463 57 HOH HOH . F 4 HOH A 64 464 114 HOH HOH . F 4 HOH A 65 465 121 HOH HOH . F 4 HOH A 66 466 9 HOH HOH . F 4 HOH A 67 467 146 HOH HOH . F 4 HOH A 68 468 141 HOH HOH . F 4 HOH A 69 469 92 HOH HOH . F 4 HOH A 70 470 52 HOH HOH . F 4 HOH A 71 471 65 HOH HOH . F 4 HOH A 72 472 174 HOH HOH . F 4 HOH A 73 473 124 HOH HOH . F 4 HOH A 74 474 43 HOH HOH . F 4 HOH A 75 475 158 HOH HOH . F 4 HOH A 76 476 101 HOH HOH . F 4 HOH A 77 477 67 HOH HOH . F 4 HOH A 78 478 130 HOH HOH . F 4 HOH A 79 479 85 HOH HOH . F 4 HOH A 80 480 110 HOH HOH . F 4 HOH A 81 481 115 HOH HOH . F 4 HOH A 82 482 149 HOH HOH . F 4 HOH A 83 483 173 HOH HOH . F 4 HOH A 84 484 165 HOH HOH . F 4 HOH A 85 485 54 HOH HOH . F 4 HOH A 86 486 133 HOH HOH . F 4 HOH A 87 487 111 HOH HOH . F 4 HOH A 88 488 139 HOH HOH . F 4 HOH A 89 489 47 HOH HOH . F 4 HOH A 90 490 131 HOH HOH . F 4 HOH A 91 491 123 HOH HOH . F 4 HOH A 92 492 51 HOH HOH . F 4 HOH A 93 493 150 HOH HOH . F 4 HOH A 94 494 107 HOH HOH . F 4 HOH A 95 495 113 HOH HOH . F 4 HOH A 96 496 117 HOH HOH . F 4 HOH A 97 497 15 HOH HOH . F 4 HOH A 98 498 108 HOH HOH . F 4 HOH A 99 499 105 HOH HOH . F 4 HOH A 100 500 171 HOH HOH . F 4 HOH A 101 501 122 HOH HOH . F 4 HOH A 102 502 80 HOH HOH . F 4 HOH A 103 503 137 HOH HOH . F 4 HOH A 104 504 169 HOH HOH . F 4 HOH A 105 505 151 HOH HOH . F 4 HOH A 106 506 154 HOH HOH . F 4 HOH A 107 507 104 HOH HOH . F 4 HOH A 108 508 170 HOH HOH . F 4 HOH A 109 509 167 HOH HOH . F 4 HOH A 110 510 162 HOH HOH . F 4 HOH A 111 511 168 HOH HOH . G 4 HOH B 1 401 8 HOH HOH . G 4 HOH B 2 402 83 HOH HOH . G 4 HOH B 3 403 156 HOH HOH . G 4 HOH B 4 404 93 HOH HOH . G 4 HOH B 5 405 127 HOH HOH . G 4 HOH B 6 406 3 HOH HOH . G 4 HOH B 7 407 29 HOH HOH . G 4 HOH B 8 408 68 HOH HOH . G 4 HOH B 9 409 72 HOH HOH . G 4 HOH B 10 410 11 HOH HOH . G 4 HOH B 11 411 87 HOH HOH . G 4 HOH B 12 412 81 HOH HOH . G 4 HOH B 13 413 135 HOH HOH . G 4 HOH B 14 414 140 HOH HOH . G 4 HOH B 15 415 82 HOH HOH . G 4 HOH B 16 416 31 HOH HOH . G 4 HOH B 17 417 74 HOH HOH . G 4 HOH B 18 418 109 HOH HOH . G 4 HOH B 19 419 157 HOH HOH . G 4 HOH B 20 420 59 HOH HOH . G 4 HOH B 21 421 126 HOH HOH . G 4 HOH B 22 422 129 HOH HOH . G 4 HOH B 23 423 6 HOH HOH . G 4 HOH B 24 424 60 HOH HOH . G 4 HOH B 25 425 147 HOH HOH . G 4 HOH B 26 426 24 HOH HOH . G 4 HOH B 27 427 75 HOH HOH . G 4 HOH B 28 428 148 HOH HOH . G 4 HOH B 29 429 100 HOH HOH . G 4 HOH B 30 430 145 HOH HOH . G 4 HOH B 31 431 128 HOH HOH . G 4 HOH B 32 432 159 HOH HOH . G 4 HOH B 33 433 61 HOH HOH . G 4 HOH B 34 434 134 HOH HOH . G 4 HOH B 35 435 160 HOH HOH . G 4 HOH B 36 436 116 HOH HOH . G 4 HOH B 37 437 86 HOH HOH . G 4 HOH B 38 438 44 HOH HOH . G 4 HOH B 39 439 144 HOH HOH . G 4 HOH B 40 440 50 HOH HOH . G 4 HOH B 41 441 96 HOH HOH . G 4 HOH B 42 442 98 HOH HOH . G 4 HOH B 43 443 164 HOH HOH . G 4 HOH B 44 444 64 HOH HOH . G 4 HOH B 45 445 136 HOH HOH . G 4 HOH B 46 446 58 HOH HOH . G 4 HOH B 47 447 77 HOH HOH . G 4 HOH B 48 448 95 HOH HOH . G 4 HOH B 49 449 99 HOH HOH . G 4 HOH B 50 450 46 HOH HOH . G 4 HOH B 51 451 53 HOH HOH . G 4 HOH B 52 452 142 HOH HOH . G 4 HOH B 53 453 94 HOH HOH . G 4 HOH B 54 454 13 HOH HOH . G 4 HOH B 55 455 172 HOH HOH . G 4 HOH B 56 456 132 HOH HOH . G 4 HOH B 57 457 138 HOH HOH . G 4 HOH B 58 458 155 HOH HOH . G 4 HOH B 59 459 56 HOH HOH . G 4 HOH B 60 460 12 HOH HOH . G 4 HOH B 61 461 166 HOH HOH . G 4 HOH B 62 462 143 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MGR . . . D 3 25.243 -8.075 -22.788 1 68.95 ? C1 MGR 301 B 1 HETATM 2 C C2 MGR . . . D 3 25.586 -8.277 -21.378 1 67.07 ? C2 MGR 301 B 1 HETATM 3 C C3 MGR . . . D 3 26.773 -7.744 -20.863 1 61.16 ? C3 MGR 301 B 1 HETATM 4 C C4 MGR . . . D 3 27.111 -7.936 -19.534 1 51.9 ? C4 MGR 301 B 1 HETATM 5 C C5 MGR . . . D 3 26.27 -8.668 -18.704 1 52.9 ? C5 MGR 301 B 1 HETATM 6 C C6 MGR . . . D 3 25.091 -9.206 -19.207 1 57.93 ? C6 MGR 301 B 1 HETATM 7 C C7 MGR . . . D 3 24.748 -9.016 -20.536 1 53.61 ? C7 MGR 301 B 1 HETATM 8 C C8 MGR . . . D 3 26.072 -8.734 -23.735 1 72.83 ? C8 MGR 301 B 1 HETATM 9 C C9 MGR . . . D 3 26.597 -10.02 -23.451 1 71.21 ? C9 MGR 301 B 1 HETATM 10 C C10 MGR . . . D 3 27.402 -10.689 -24.326 1 77.29 ? C10 MGR 301 B 1 HETATM 11 C C11 MGR . . . D 3 27.761 -10.114 -25.575 1 82.68 ? C11 MGR 301 B 1 HETATM 12 C C12 MGR . . . D 3 27.244 -8.822 -25.867 1 84.72 ? C12 MGR 301 B 1 HETATM 13 C C13 MGR . . . D 3 26.442 -8.165 -24.98 1 81.25 ? C13 MGR 301 B 1 HETATM 14 C C14 MGR . . . D 3 24.064 -7.357 -23.131 1 62.34 ? C14 MGR 301 B 1 HETATM 15 C C15 MGR . . . D 3 23.282 -7.701 -24.263 1 61.07 ? C15 MGR 301 B 1 HETATM 16 C C16 MGR . . . D 3 22.15 -7.019 -24.605 1 61.45 ? C16 MGR 301 B 1 HETATM 17 C C17 MGR . . . D 3 21.69 -5.919 -23.832 1 55.25 ? C17 MGR 301 B 1 HETATM 18 C C18 MGR . . . D 3 22.465 -5.565 -22.693 1 61.52 ? C18 MGR 301 B 1 HETATM 19 C C19 MGR . . . D 3 23.598 -6.257 -22.366 1 63.69 ? C19 MGR 301 B 1 HETATM 20 C C22 MGR . . . D 3 29.839 -11.278 -26.006 1 85.78 ? C22 MGR 301 B 1 HETATM 21 C C23 MGR . . . D 3 28.133 -10.973 -27.81 1 88.99 ? C23 MGR 301 B 1 HETATM 22 C C24 MGR . . . D 3 19.958 -5.491 -25.464 1 47.96 ? C24 MGR 301 B 1 HETATM 23 C C25 MGR . . . D 3 20.154 -4.087 -23.418 1 47.32 ? C25 MGR 301 B 1 HETATM 24 N N2 MGR . . . D 3 28.551 -10.766 -26.436 1 85.05 ? N2 MGR 301 B 1 HETATM 25 N N3 MGR . . . D 3 20.578 -5.251 -24.173 1 53.73 ? N3 MGR 301 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 239 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 25 #