data_9C0W # _model_server_result.job_id r0ZDDVovJJbEDCsBZ1JMFA _model_server_result.datetime_utc '2025-02-24 14:33:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 9c0w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":302}' # _entry.id 9C0W # _exptl.entry_id 9C0W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 9C0W _cell.length_a 47.133 _cell.length_b 74.164 _cell.length_c 135.543 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 9C0W _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 70 n n N1 C10 FMN doub 71 n n C2 O2 FMN doub 72 n n C2 N3 FMN sing 73 n n N3 C4 FMN sing 74 n n N3 HN3 FMN sing 75 n n C4 O4 FMN doub 76 n n C4 C4A FMN sing 77 n n C4A N5 FMN doub 78 n n C4A C10 FMN sing 79 n n N5 C5A FMN sing 80 n n C5A C6 FMN doub 81 n y C5A C9A FMN sing 82 n y C6 C7 FMN sing 83 n y C6 H6 FMN sing 84 n n C7 C7M FMN sing 85 n n C7 C8 FMN doub 86 n y C7M HM71 FMN sing 87 n n C7M HM72 FMN sing 88 n n C7M HM73 FMN sing 89 n n C8 C8M FMN sing 90 n n C8 C9 FMN sing 91 n y C8M HM81 FMN sing 92 n n C8M HM82 FMN sing 93 n n C8M HM83 FMN sing 94 n n C9 C9A FMN doub 95 n y C9 H9 FMN sing 96 n n C9A N10 FMN sing 97 n n N10 C10 FMN sing 98 n n N10 C1' FMN sing 99 n n C1' C2' FMN sing 100 n n C1' "H1'1" FMN sing 101 n n C1' "H1'2" FMN sing 102 n n C2' O2' FMN sing 103 n n C2' C3' FMN sing 104 n n C2' H2' FMN sing 105 n n O2' HO2' FMN sing 106 n n C3' O3' FMN sing 107 n n C3' C4' FMN sing 108 n n C3' H3' FMN sing 109 n n O3' HO3' FMN sing 110 n n C4' O4' FMN sing 111 n n C4' C5' FMN sing 112 n n C4' H4' FMN sing 113 n n O4' HO4' FMN sing 114 n n C5' O5' FMN sing 115 n n C5' "H5'1" FMN sing 116 n n C5' "H5'2" FMN sing 117 n n O5' P FMN sing 118 n n P O1P FMN doub 119 n n P O2P FMN sing 120 n n P O3P FMN sing 121 n n O2P HOP2 FMN sing 122 n n O3P HOP3 FMN sing 123 n n # _atom_sites.entry_id 9C0W _atom_sites.fract_transf_matrix[1][1] 0.021217 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013484 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007378 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FMN A 1 301 1 FMN FMN . D 3 MGR B 1 301 2 MGR MGR . E 2 FMN B 1 302 3 FMN FMN . F 4 HOH A 1 401 106 HOH HOH . F 4 HOH A 2 402 125 HOH HOH . F 4 HOH A 3 403 23 HOH HOH . F 4 HOH A 4 404 2 HOH HOH . F 4 HOH A 5 405 70 HOH HOH . F 4 HOH A 6 406 71 HOH HOH . F 4 HOH A 7 407 37 HOH HOH . F 4 HOH A 8 408 10 HOH HOH . F 4 HOH A 9 409 112 HOH HOH . F 4 HOH A 10 410 4 HOH HOH . F 4 HOH A 11 411 41 HOH HOH . F 4 HOH A 12 412 5 HOH HOH . F 4 HOH A 13 413 79 HOH HOH . F 4 HOH A 14 414 88 HOH HOH . F 4 HOH A 15 415 14 HOH HOH . F 4 HOH A 16 416 84 HOH HOH . F 4 HOH A 17 417 17 HOH HOH . F 4 HOH A 18 418 27 HOH HOH . F 4 HOH A 19 419 19 HOH HOH . F 4 HOH A 20 420 76 HOH HOH . F 4 HOH A 21 421 42 HOH HOH . F 4 HOH A 22 422 16 HOH HOH . F 4 HOH A 23 423 119 HOH HOH . F 4 HOH A 24 424 25 HOH HOH . F 4 HOH A 25 425 55 HOH HOH . F 4 HOH A 26 426 20 HOH HOH . F 4 HOH A 27 427 49 HOH HOH . F 4 HOH A 28 428 33 HOH HOH . F 4 HOH A 29 429 40 HOH HOH . F 4 HOH A 30 430 18 HOH HOH . F 4 HOH A 31 431 28 HOH HOH . F 4 HOH A 32 432 1 HOH HOH . F 4 HOH A 33 433 102 HOH HOH . F 4 HOH A 34 434 78 HOH HOH . F 4 HOH A 35 435 45 HOH HOH . F 4 HOH A 36 436 69 HOH HOH . F 4 HOH A 37 437 26 HOH HOH . F 4 HOH A 38 438 73 HOH HOH . F 4 HOH A 39 439 91 HOH HOH . F 4 HOH A 40 440 89 HOH HOH . F 4 HOH A 41 441 21 HOH HOH . F 4 HOH A 42 442 48 HOH HOH . F 4 HOH A 43 443 153 HOH HOH . F 4 HOH A 44 444 163 HOH HOH . F 4 HOH A 45 445 62 HOH HOH . F 4 HOH A 46 446 22 HOH HOH . F 4 HOH A 47 447 39 HOH HOH . F 4 HOH A 48 448 35 HOH HOH . F 4 HOH A 49 449 38 HOH HOH . F 4 HOH A 50 450 7 HOH HOH . F 4 HOH A 51 451 118 HOH HOH . F 4 HOH A 52 452 36 HOH HOH . F 4 HOH A 53 453 66 HOH HOH . F 4 HOH A 54 454 97 HOH HOH . F 4 HOH A 55 455 30 HOH HOH . F 4 HOH A 56 456 34 HOH HOH . F 4 HOH A 57 457 63 HOH HOH . F 4 HOH A 58 458 90 HOH HOH . F 4 HOH A 59 459 152 HOH HOH . F 4 HOH A 60 460 103 HOH HOH . F 4 HOH A 61 461 120 HOH HOH . F 4 HOH A 62 462 161 HOH HOH . F 4 HOH A 63 463 57 HOH HOH . F 4 HOH A 64 464 114 HOH HOH . F 4 HOH A 65 465 121 HOH HOH . F 4 HOH A 66 466 9 HOH HOH . F 4 HOH A 67 467 146 HOH HOH . F 4 HOH A 68 468 141 HOH HOH . F 4 HOH A 69 469 92 HOH HOH . F 4 HOH A 70 470 52 HOH HOH . F 4 HOH A 71 471 65 HOH HOH . F 4 HOH A 72 472 174 HOH HOH . F 4 HOH A 73 473 124 HOH HOH . F 4 HOH A 74 474 43 HOH HOH . F 4 HOH A 75 475 158 HOH HOH . F 4 HOH A 76 476 101 HOH HOH . F 4 HOH A 77 477 67 HOH HOH . F 4 HOH A 78 478 130 HOH HOH . F 4 HOH A 79 479 85 HOH HOH . F 4 HOH A 80 480 110 HOH HOH . F 4 HOH A 81 481 115 HOH HOH . F 4 HOH A 82 482 149 HOH HOH . F 4 HOH A 83 483 173 HOH HOH . F 4 HOH A 84 484 165 HOH HOH . F 4 HOH A 85 485 54 HOH HOH . F 4 HOH A 86 486 133 HOH HOH . F 4 HOH A 87 487 111 HOH HOH . F 4 HOH A 88 488 139 HOH HOH . F 4 HOH A 89 489 47 HOH HOH . F 4 HOH A 90 490 131 HOH HOH . F 4 HOH A 91 491 123 HOH HOH . F 4 HOH A 92 492 51 HOH HOH . F 4 HOH A 93 493 150 HOH HOH . F 4 HOH A 94 494 107 HOH HOH . F 4 HOH A 95 495 113 HOH HOH . F 4 HOH A 96 496 117 HOH HOH . F 4 HOH A 97 497 15 HOH HOH . F 4 HOH A 98 498 108 HOH HOH . F 4 HOH A 99 499 105 HOH HOH . F 4 HOH A 100 500 171 HOH HOH . F 4 HOH A 101 501 122 HOH HOH . F 4 HOH A 102 502 80 HOH HOH . F 4 HOH A 103 503 137 HOH HOH . F 4 HOH A 104 504 169 HOH HOH . F 4 HOH A 105 505 151 HOH HOH . F 4 HOH A 106 506 154 HOH HOH . F 4 HOH A 107 507 104 HOH HOH . F 4 HOH A 108 508 170 HOH HOH . F 4 HOH A 109 509 167 HOH HOH . F 4 HOH A 110 510 162 HOH HOH . F 4 HOH A 111 511 168 HOH HOH . G 4 HOH B 1 401 8 HOH HOH . G 4 HOH B 2 402 83 HOH HOH . G 4 HOH B 3 403 156 HOH HOH . G 4 HOH B 4 404 93 HOH HOH . G 4 HOH B 5 405 127 HOH HOH . G 4 HOH B 6 406 3 HOH HOH . G 4 HOH B 7 407 29 HOH HOH . G 4 HOH B 8 408 68 HOH HOH . G 4 HOH B 9 409 72 HOH HOH . G 4 HOH B 10 410 11 HOH HOH . G 4 HOH B 11 411 87 HOH HOH . G 4 HOH B 12 412 81 HOH HOH . G 4 HOH B 13 413 135 HOH HOH . G 4 HOH B 14 414 140 HOH HOH . G 4 HOH B 15 415 82 HOH HOH . G 4 HOH B 16 416 31 HOH HOH . G 4 HOH B 17 417 74 HOH HOH . G 4 HOH B 18 418 109 HOH HOH . G 4 HOH B 19 419 157 HOH HOH . G 4 HOH B 20 420 59 HOH HOH . G 4 HOH B 21 421 126 HOH HOH . G 4 HOH B 22 422 129 HOH HOH . G 4 HOH B 23 423 6 HOH HOH . G 4 HOH B 24 424 60 HOH HOH . G 4 HOH B 25 425 147 HOH HOH . G 4 HOH B 26 426 24 HOH HOH . G 4 HOH B 27 427 75 HOH HOH . G 4 HOH B 28 428 148 HOH HOH . G 4 HOH B 29 429 100 HOH HOH . G 4 HOH B 30 430 145 HOH HOH . G 4 HOH B 31 431 128 HOH HOH . G 4 HOH B 32 432 159 HOH HOH . G 4 HOH B 33 433 61 HOH HOH . G 4 HOH B 34 434 134 HOH HOH . G 4 HOH B 35 435 160 HOH HOH . G 4 HOH B 36 436 116 HOH HOH . G 4 HOH B 37 437 86 HOH HOH . G 4 HOH B 38 438 44 HOH HOH . G 4 HOH B 39 439 144 HOH HOH . G 4 HOH B 40 440 50 HOH HOH . G 4 HOH B 41 441 96 HOH HOH . G 4 HOH B 42 442 98 HOH HOH . G 4 HOH B 43 443 164 HOH HOH . G 4 HOH B 44 444 64 HOH HOH . G 4 HOH B 45 445 136 HOH HOH . G 4 HOH B 46 446 58 HOH HOH . G 4 HOH B 47 447 77 HOH HOH . G 4 HOH B 48 448 95 HOH HOH . G 4 HOH B 49 449 99 HOH HOH . G 4 HOH B 50 450 46 HOH HOH . G 4 HOH B 51 451 53 HOH HOH . G 4 HOH B 52 452 142 HOH HOH . G 4 HOH B 53 453 94 HOH HOH . G 4 HOH B 54 454 13 HOH HOH . G 4 HOH B 55 455 172 HOH HOH . G 4 HOH B 56 456 132 HOH HOH . G 4 HOH B 57 457 138 HOH HOH . G 4 HOH B 58 458 155 HOH HOH . G 4 HOH B 59 459 56 HOH HOH . G 4 HOH B 60 460 12 HOH HOH . G 4 HOH B 61 461 166 HOH HOH . G 4 HOH B 62 462 143 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . E 2 4.471 3.862 -2.281 1 54 ? N1 FMN 302 B 1 HETATM 2 C C2 FMN . . . E 2 5.636 3.249 -1.866 1 51.19 ? C2 FMN 302 B 1 HETATM 3 O O2 FMN . . . E 2 6.402 3.838 -1.104 1 51.96 ? O2 FMN 302 B 1 HETATM 4 N N3 FMN . . . E 2 5.943 1.976 -2.301 1 48.32 ? N3 FMN 302 B 1 HETATM 5 C C4 FMN . . . E 2 5.088 1.31 -3.155 1 53.24 ? C4 FMN 302 B 1 HETATM 6 O O4 FMN . . . E 2 5.368 0.175 -3.54 1 42.75 ? O4 FMN 302 B 1 HETATM 7 C C4A FMN . . . E 2 3.913 1.923 -3.576 1 51.84 ? C4A FMN 302 B 1 HETATM 8 N N5 FMN . . . E 2 3.05 1.267 -4.428 1 40.45 ? N5 FMN 302 B 1 HETATM 9 C C5A FMN . . . E 2 1.886 1.883 -4.844 1 46.89 ? C5A FMN 302 B 1 HETATM 10 C C6 FMN . . . E 2 1.019 1.217 -5.703 1 38.26 ? C6 FMN 302 B 1 HETATM 11 C C7 FMN . . . E 2 -0.154 1.831 -6.126 1 39.33 ? C7 FMN 302 B 1 HETATM 12 C C7M FMN . . . E 2 -1.085 1.108 -7.054 1 38.65 ? C7M FMN 302 B 1 HETATM 13 C C8 FMN . . . E 2 -0.461 3.113 -5.686 1 37.61 ? C8 FMN 302 B 1 HETATM 14 C C8M FMN . . . E 2 -1.725 3.785 -6.134 1 36.08 ? C8M FMN 302 B 1 HETATM 15 C C9 FMN . . . E 2 0.404 3.776 -4.825 1 40.51 ? C9 FMN 302 B 1 HETATM 16 C C9A FMN . . . E 2 1.581 3.166 -4.402 1 46.8 ? C9A FMN 302 B 1 HETATM 17 N N10 FMN . . . E 2 2.448 3.823 -3.547 1 42.51 ? N10 FMN 302 B 1 HETATM 18 C C10 FMN . . . E 2 3.609 3.204 -3.133 1 48.06 ? C10 FMN 302 B 1 HETATM 19 C C1' FMN . . . E 2 2.146 5.208 -3.054 1 42.28 ? C1' FMN 302 B 1 HETATM 20 C C2' FMN . . . E 2 2.632 6.234 -4.073 1 42.79 ? C2' FMN 302 B 1 HETATM 21 O O2' FMN . . . E 2 3.887 5.846 -4.583 1 51.21 ? O2' FMN 302 B 1 HETATM 22 C C3' FMN . . . E 2 2.74 7.621 -3.453 1 47.89 ? C3' FMN 302 B 1 HETATM 23 O O3' FMN . . . E 2 1.488 8.001 -2.929 1 51.54 ? O3' FMN 302 B 1 HETATM 24 C C4' FMN . . . E 2 3.183 8.633 -4.499 1 44.33 ? C4' FMN 302 B 1 HETATM 25 O O4' FMN . . . E 2 3.213 9.915 -3.917 1 51.03 ? O4' FMN 302 B 1 HETATM 26 C C5' FMN . . . E 2 2.205 8.659 -5.663 1 50.08 ? C5' FMN 302 B 1 HETATM 27 O O5' FMN . . . E 2 2.746 9.399 -6.734 1 42.91 ? O5' FMN 302 B 1 HETATM 28 P P FMN . . . E 2 1.949 10.686 -7.28 1 41.92 ? P FMN 302 B 1 HETATM 29 O O1P FMN . . . E 2 2.925 11.621 -7.951 1 43.5 ? O1P FMN 302 B 1 HETATM 30 O O2P FMN . . . E 2 1.314 11.399 -6.111 1 53.09 -1 O2P FMN 302 B 1 HETATM 31 O O3P FMN . . . E 2 0.879 10.253 -8.254 1 51.35 ? O3P FMN 302 B 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 31 #